Wall clock time and date at job start Mon Mar 30 2020 04:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00288 * 2 1 4 4 O 1.20820 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00104 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47041 * 145.03583 * 5 3 2 7 7 H 1.08995 * 109.87192 * 49.70674 * 6 5 3 8 8 C 1.54323 * 109.88183 * 170.71863 * 6 5 3 9 9 C 1.55156 * 102.94464 * 141.61215 * 8 6 5 10 10 C 1.54903 * 101.57908 * 324.49762 * 9 8 6 11 11 N 1.47022 * 109.88701 * 288.52640 * 6 5 3 12 12 C 1.34781 * 125.64472 * 61.61603 * 11 6 5 13 13 O 1.21280 * 119.99835 * 4.87579 * 12 11 6 14 14 C 1.50702 * 119.99411 * 184.87200 * 12 11 6 15 15 H 1.08995 * 109.47453 * 39.94335 * 14 12 11 16 16 C 1.53003 * 109.47081 * 279.93552 * 14 12 11 17 17 C 1.50704 * 109.46553 * 159.93985 * 14 12 11 18 18 H 1.08001 * 120.00237 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99966 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99606 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00125 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47269 * 59.99748 * 21 19 17 23 23 H 1.48497 * 109.47161 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47116 * 299.99940 * 21 19 17 25 25 H 1.08994 * 109.47049 * 59.99339 * 1 2 3 26 26 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46426 * 299.99778 * 1 2 3 28 28 H 1.09005 * 109.47462 * 265.04187 * 5 3 2 29 29 H 1.09004 * 109.46943 * 25.03493 * 5 3 2 30 30 H 1.09002 * 110.72143 * 259.97823 * 8 6 5 31 31 H 1.08997 * 110.72292 * 23.06821 * 8 6 5 32 32 H 1.08997 * 111.00318 * 82.57432 * 9 8 6 33 33 H 1.08997 * 111.00420 * 206.38498 * 9 8 6 34 34 H 1.09000 * 110.36929 * 155.84513 * 10 9 8 35 35 H 1.09004 * 110.36687 * 278.05952 * 10 9 8 36 36 H 1.08996 * 109.47078 * 292.53890 * 16 14 12 37 37 H 1.08997 * 109.46451 * 52.54258 * 16 14 12 38 38 H 1.09005 * 109.46590 * 172.53774 * 16 14 12 39 39 H 0.97003 * 119.99612 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0135 2.4821 -0.8271 7 1 3.4649 3.3699 -0.5128 8 6 5.5290 2.7100 -0.6459 9 6 5.9900 3.1286 -2.0670 10 6 5.0729 2.2570 -2.9607 11 7 3.7786 2.2250 -2.2555 12 6 2.5788 1.9971 -2.8256 13 8 1.5667 2.0805 -2.1626 14 6 2.4949 1.6388 -4.2870 15 1 3.3075 0.9583 -4.5415 16 6 2.6105 2.9096 -5.1312 17 6 1.1736 0.9694 -4.5650 18 1 0.4653 0.8190 -3.7637 19 6 0.8685 0.5500 -5.8425 20 7 1.7305 0.7346 -6.8186 21 14 -0.7695 -0.2790 -6.1873 22 1 -1.8764 0.6483 -5.8402 23 1 -0.8522 -0.6322 -7.6272 24 1 -0.8821 -1.5126 -5.3682 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 3.9251 1.3823 1.0231 29 1 3.9777 0.3640 -0.4358 30 1 5.7157 3.5095 0.0712 31 1 6.0227 1.7901 -0.3327 32 1 5.8096 4.1897 -2.2395 33 1 7.0398 2.8821 -2.2256 34 1 4.9577 2.7124 -3.9443 35 1 5.4805 1.2504 -3.0548 36 1 1.7287 3.5310 -4.9749 37 1 3.5019 3.4625 -4.8351 38 1 2.6832 2.6404 -6.1850 39 1 1.5157 0.4398 -7.7174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597415557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:39 Heat of formation + Delta-G solvation = -120.686477 kcal Electronic energy + Delta-G solvation = -22293.847505 eV Core-core repulsion = 19008.765894 eV Total energy + Delta-G solvation = -3285.081611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23433 -38.97336 -36.87021 -35.72593 -33.71434 -31.87716 -31.19897 -29.93466 -27.68166 -25.88458 -25.13602 -23.58347 -21.78700 -20.83303 -20.12863 -18.25464 -17.01878 -16.55873 -16.30464 -15.99242 -15.73625 -15.40771 -14.59704 -13.81632 -13.75539 -13.42264 -13.28841 -12.99414 -12.74843 -12.61069 -12.09613 -12.03260 -11.73394 -11.48801 -11.33549 -11.06777 -10.97634 -10.92546 -10.73828 -10.66247 -10.49170 -10.21583 -10.11858 -9.92392 -9.72149 -8.95881 -8.47993 -8.22579 -8.01598 -6.01403 -4.03442 2.95627 3.32135 3.36061 3.38609 3.43304 3.66198 3.78616 4.47322 4.62178 4.73648 4.90411 5.18061 5.32352 5.33660 5.37962 5.49161 5.59462 5.63519 5.70649 5.73766 5.79855 5.89427 6.00842 6.08637 6.14608 6.21915 6.35211 6.70383 6.89245 6.95964 7.02843 7.11268 7.52333 7.78439 8.01662 8.16573 8.45435 8.49137 9.02053 9.32538 9.60956 11.06781 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.008150 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.963588 B = 3434.720621 C = 4755.079262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.367 6.367 3 C 0.464 3.536 4 O -0.476 6.476 5 C -0.121 4.121 6 C 0.140 3.860 7 H 0.084 0.916 8 C -0.125 4.125 9 C -0.132 4.132 10 C 0.101 3.899 11 N -0.631 5.631 12 C 0.527 3.473 13 O -0.519 6.519 14 C 0.038 3.962 15 H 0.044 0.956 16 C -0.127 4.127 17 C -0.497 4.497 18 H 0.068 0.932 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.012 0.988 38 H 0.088 0.912 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 1.164 11.314 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.285 6.285 3 C 0.305 3.695 4 O -0.361 6.361 5 C -0.160 4.160 6 C 0.036 3.964 7 H 0.102 0.898 8 C -0.163 4.163 9 C -0.170 4.170 10 C -0.022 4.022 11 N -0.369 5.369 12 C 0.319 3.681 13 O -0.394 6.394 14 C 0.017 3.983 15 H 0.062 0.938 16 C -0.185 4.185 17 C -0.536 4.536 18 H 0.086 0.914 19 C -0.141 4.141 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.107 0.893 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.456 1.464 11.420 14.285 hybrid contribution -0.974 -0.461 -0.340 1.130 sum 7.482 1.003 11.080 13.407 Atomic orbital electron populations 1.23088 0.76860 1.02515 1.02495 1.86386 1.23179 1.34011 1.84915 1.23029 0.91431 0.81696 0.73334 1.90629 1.66628 1.36025 1.42786 1.21767 0.89620 1.01850 1.02732 1.21395 0.95691 0.96294 0.83019 0.89820 1.22653 0.93580 1.02143 0.97897 1.22776 0.99403 1.00410 0.94441 1.22274 0.83468 0.99533 0.96911 1.48987 1.07228 1.73936 1.06710 1.21907 0.80509 0.74042 0.91686 1.90704 1.34180 1.50072 1.64425 1.18816 0.99601 0.95369 0.84558 0.93775 1.21711 0.97104 0.96071 1.03607 1.21026 1.00869 1.36993 0.94685 0.91374 1.24922 0.97168 0.95968 0.96045 1.69880 1.35202 1.47578 1.00903 0.86542 0.84071 0.79903 0.76835 1.20216 1.21325 1.20258 0.90990 0.89204 0.93099 0.87543 0.88663 0.90217 0.90421 0.90723 0.90061 0.89903 0.91851 0.94657 0.96942 0.89321 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.37 -7.05 10.57 -39.28 -0.42 -7.47 16 3 C 0.46 9.03 5.34 36.01 0.19 9.22 16 4 O -0.48 -10.78 13.23 -26.99 -0.36 -11.13 16 5 C -0.12 -1.77 5.27 -27.89 -0.15 -1.92 16 6 C 0.14 2.13 2.94 -66.96 -0.20 1.93 16 7 H 0.08 1.44 7.51 -51.93 -0.39 1.05 16 8 C -0.12 -1.27 6.47 -24.90 -0.16 -1.43 16 9 C -0.13 -1.39 7.08 -24.59 -0.17 -1.56 16 10 C 0.10 1.47 6.38 -2.53 -0.02 1.46 16 11 N -0.63 -11.62 3.07 -163.02 -0.50 -12.12 16 12 C 0.53 12.48 6.61 -10.98 -0.07 12.41 16 13 O -0.52 -13.81 10.87 -19.38 -0.21 -14.02 16 14 C 0.04 0.96 1.96 -92.92 -0.18 0.78 16 15 H 0.04 1.15 7.77 -51.93 -0.40 0.75 16 16 C -0.13 -3.06 8.68 37.16 0.32 -2.74 16 17 C -0.50 -14.33 8.34 -34.44 -0.29 -14.61 16 18 H 0.07 2.07 6.93 -52.49 -0.36 1.71 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 20 N -0.90 -25.42 11.41 55.43 0.63 -24.79 16 21 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.11 1.15 8.13 -51.93 -0.42 0.72 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.66 7.85 -51.93 -0.41 0.26 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.28 5.86 -51.93 -0.30 0.98 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.88 8.13 -51.93 -0.42 0.46 16 37 H 0.01 0.25 6.28 -51.93 -0.33 -0.08 16 38 H 0.09 2.28 6.31 -51.93 -0.33 1.96 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -34.31 313.12 -6.79 -41.10 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.88 Total: -0.31 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 0.25 Total: 6.94 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.13 Total: -36.91 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.98 Total: -32.62 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.31 -6.79 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597415557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.590 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds