Wall clock time and date at job start Mon Mar 30 2020 04:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00288 * 2 1 4 4 O 1.20820 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00104 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47041 * 145.03583 * 5 3 2 7 7 H 1.08995 * 109.87192 * 49.70674 * 6 5 3 8 8 C 1.54323 * 109.88183 * 170.71863 * 6 5 3 9 9 C 1.55156 * 102.94464 * 141.61215 * 8 6 5 10 10 C 1.54903 * 101.57908 * 324.49762 * 9 8 6 11 11 N 1.47022 * 109.88701 * 288.52640 * 6 5 3 12 12 C 1.34781 * 125.64472 * 61.61603 * 11 6 5 13 13 O 1.21280 * 119.99835 * 4.87579 * 12 11 6 14 14 C 1.50702 * 119.99411 * 184.87200 * 12 11 6 15 15 H 1.08995 * 109.47453 * 39.94335 * 14 12 11 16 16 C 1.53003 * 109.47081 * 279.93552 * 14 12 11 17 17 C 1.50704 * 109.46553 * 159.93985 * 14 12 11 18 18 H 1.08001 * 120.00237 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99966 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99606 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 120.00125 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47269 * 59.99748 * 21 19 17 23 23 H 1.48497 * 109.47161 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47116 * 299.99940 * 21 19 17 25 25 H 1.08994 * 109.47049 * 59.99339 * 1 2 3 26 26 H 1.08999 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46426 * 299.99778 * 1 2 3 28 28 H 1.09005 * 109.47462 * 265.04187 * 5 3 2 29 29 H 1.09004 * 109.46943 * 25.03493 * 5 3 2 30 30 H 1.09002 * 110.72143 * 259.97823 * 8 6 5 31 31 H 1.08997 * 110.72292 * 23.06821 * 8 6 5 32 32 H 1.08997 * 111.00318 * 82.57432 * 9 8 6 33 33 H 1.08997 * 111.00420 * 206.38498 * 9 8 6 34 34 H 1.09000 * 110.36929 * 155.84513 * 10 9 8 35 35 H 1.09004 * 110.36687 * 278.05952 * 10 9 8 36 36 H 1.08996 * 109.47078 * 292.53890 * 16 14 12 37 37 H 1.08997 * 109.46451 * 52.54258 * 16 14 12 38 38 H 1.09005 * 109.46590 * 172.53774 * 16 14 12 39 39 H 0.97003 * 119.99612 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0135 2.4821 -0.8271 7 1 3.4649 3.3699 -0.5128 8 6 5.5290 2.7100 -0.6459 9 6 5.9900 3.1286 -2.0670 10 6 5.0729 2.2570 -2.9607 11 7 3.7786 2.2250 -2.2555 12 6 2.5788 1.9971 -2.8256 13 8 1.5667 2.0805 -2.1626 14 6 2.4949 1.6388 -4.2870 15 1 3.3075 0.9583 -4.5415 16 6 2.6105 2.9096 -5.1312 17 6 1.1736 0.9694 -4.5650 18 1 0.4653 0.8190 -3.7637 19 6 0.8685 0.5500 -5.8425 20 7 1.7305 0.7346 -6.8186 21 14 -0.7695 -0.2790 -6.1873 22 1 -1.8764 0.6483 -5.8402 23 1 -0.8522 -0.6322 -7.6272 24 1 -0.8821 -1.5126 -5.3682 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 3.9251 1.3823 1.0231 29 1 3.9777 0.3640 -0.4358 30 1 5.7157 3.5095 0.0712 31 1 6.0227 1.7901 -0.3327 32 1 5.8096 4.1897 -2.2395 33 1 7.0398 2.8821 -2.2256 34 1 4.9577 2.7124 -3.9443 35 1 5.4805 1.2504 -3.0548 36 1 1.7287 3.5310 -4.9749 37 1 3.5019 3.4625 -4.8351 38 1 2.6832 2.6404 -6.1850 39 1 1.5157 0.4398 -7.7174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597415557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:38 Heat of formation + Delta-G solvation = -142.676607 kcal Electronic energy + Delta-G solvation = -22294.801069 eV Core-core repulsion = 19008.765894 eV Total energy + Delta-G solvation = -3286.035175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.69043 -40.48670 -38.40688 -37.24688 -35.78061 -33.40465 -32.50528 -31.70613 -29.00938 -27.31036 -27.06314 -25.23683 -23.26360 -21.99185 -21.61825 -19.73862 -18.53505 -18.29023 -17.97296 -17.52071 -17.28413 -17.05814 -16.39792 -15.49011 -15.22818 -14.82881 -14.59016 -14.54906 -14.20236 -13.83456 -13.74380 -13.45066 -13.37190 -12.99832 -12.91109 -12.73435 -12.63104 -12.42421 -12.25956 -12.17322 -12.03701 -11.89608 -11.62808 -11.52202 -11.21710 -11.08756 -10.59807 -10.12538 -9.49996 -8.18523 -6.27824 1.35733 1.37908 1.46016 1.50595 1.90206 2.08764 2.20441 2.43893 3.11259 3.57687 3.71536 3.87155 4.03834 4.21488 4.24956 4.30764 4.36018 4.39119 4.48107 4.61774 4.67803 4.68817 4.74977 4.81056 4.94680 5.01871 5.07911 5.13704 5.20017 5.39215 5.44342 5.61423 5.68127 5.70382 5.89595 6.17563 6.68414 6.80767 7.01256 7.37779 7.59122 8.87991 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.008150 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.963588 B = 3434.720621 C = 4755.079262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.377 6.377 3 C 0.452 3.548 4 O -0.518 6.518 5 C -0.116 4.116 6 C 0.132 3.868 7 H 0.058 0.942 8 C -0.108 4.108 9 C -0.119 4.119 10 C 0.088 3.912 11 N -0.629 5.629 12 C 0.520 3.480 13 O -0.559 6.559 14 C 0.036 3.964 15 H 0.035 0.965 16 C -0.112 4.112 17 C -0.525 4.525 18 H 0.040 0.960 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.953 3.047 22 H -0.281 1.281 23 H -0.271 1.271 24 H -0.273 1.273 25 H 0.030 0.970 26 H 0.124 0.876 27 H 0.065 0.935 28 H 0.155 0.845 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.012 0.988 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 0.754 12.409 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.295 3.705 4 O -0.405 6.405 5 C -0.154 4.154 6 C 0.028 3.972 7 H 0.076 0.924 8 C -0.146 4.146 9 C -0.157 4.157 10 C -0.034 4.034 11 N -0.365 5.365 12 C 0.311 3.689 13 O -0.437 6.437 14 C 0.015 3.985 15 H 0.053 0.947 16 C -0.170 4.170 17 C -0.563 4.563 18 H 0.058 0.942 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.778 3.222 22 H -0.207 1.207 23 H -0.196 1.196 24 H -0.198 1.198 25 H 0.049 0.951 26 H 0.142 0.858 27 H 0.084 0.916 28 H 0.172 0.828 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.029 1.049 12.516 16.715 hybrid contribution -1.729 -0.326 -0.680 1.886 sum 9.300 0.723 11.836 15.070 Atomic orbital electron populations 1.23186 0.76344 1.04349 1.01138 1.86390 1.23962 1.34353 1.84731 1.24122 0.93428 0.81037 0.71865 1.90601 1.67934 1.37190 1.44763 1.21989 0.85957 1.01919 1.05552 1.21723 0.99335 0.95477 0.80642 0.92387 1.22701 0.88987 1.04586 0.98294 1.22784 1.00233 0.99403 0.93288 1.22607 0.82491 1.01263 0.97039 1.48880 1.06889 1.71717 1.08968 1.21433 0.81862 0.74637 0.90954 1.90698 1.36051 1.52064 1.64870 1.18692 0.97670 0.95342 0.86788 0.94680 1.21504 0.97555 0.95572 1.02338 1.21142 1.02117 1.38547 0.94496 0.94161 1.25567 1.00209 0.96299 0.95703 1.69949 1.36291 1.47530 1.01104 0.85703 0.80149 0.78905 0.77442 1.20726 1.19573 1.19780 0.95125 0.85783 0.91639 0.82757 0.87771 0.87451 0.87556 0.90832 0.86380 0.91409 0.90656 0.96853 0.93654 0.90997 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 10.56 113.37 1.20 2.73 16 2 O -0.38 -14.64 10.57 -51.36 -0.54 -15.18 16 3 C 0.45 17.72 5.34 71.24 0.38 18.10 16 4 O -0.52 -24.28 13.23 29.86 0.40 -23.89 16 5 C -0.12 -3.15 5.27 29.85 0.16 -2.99 16 6 C 0.13 3.72 2.94 45.34 0.13 3.86 16 7 H 0.06 1.96 7.51 -2.39 -0.02 1.94 16 8 C -0.11 -1.66 6.47 31.78 0.21 -1.46 16 9 C -0.12 -1.98 7.08 31.98 0.23 -1.75 16 10 C 0.09 2.37 6.38 86.85 0.55 2.92 16 11 N -0.63 -22.76 3.07 -788.07 -2.42 -25.17 16 12 C 0.52 25.39 6.61 87.66 0.58 25.97 16 13 O -0.56 -31.20 10.87 20.81 0.23 -30.98 16 14 C 0.04 1.92 1.96 -12.28 -0.02 1.89 16 15 H 0.04 1.89 7.77 -2.39 -0.02 1.87 16 16 C -0.11 -5.53 8.68 71.98 0.63 -4.91 16 17 C -0.52 -31.48 8.34 25.60 0.21 -31.27 16 18 H 0.04 2.59 6.93 -2.91 -0.02 2.57 16 19 C 0.02 1.24 5.30 84.65 0.45 1.69 16 20 N -0.91 -52.14 11.41 21.45 0.24 -51.90 16 21 Si 0.95 46.06 29.54 68.60 2.03 48.09 16 22 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 25 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 26 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 27 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 28 H 0.15 2.67 8.13 -2.38 -0.02 2.65 16 29 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.12 7.85 -2.39 -0.02 1.10 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 2.02 5.86 -2.39 -0.01 2.00 16 35 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.01 0.66 8.13 -2.39 -0.02 0.64 16 37 H 0.04 1.88 6.28 -2.39 -0.01 1.86 16 38 H 0.07 3.78 6.31 -2.38 -0.02 3.77 16 39 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -79.93 313.12 5.67 -74.27 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.04 Total: 9.97 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 4.70 Total: 14.78 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.17 Total: -77.07 kcal Atomic # 8 Polarization: -70.12 SS G_CDS: 0.08 Total: -70.04 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -79.93 5.67 -74.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597415557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.410 kcal (2) G-P(sol) polarization free energy of solvation -79.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds