Wall clock time and date at job start Mon Mar 30 2020 04:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00195 * 2 1 4 4 O 1.20830 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00382 * 179.97438 * 3 2 1 6 6 C 1.52989 * 109.47518 * 185.18141 * 5 3 2 7 7 H 1.08997 * 110.00138 * 306.80916 * 6 5 3 8 8 C 1.54317 * 109.77340 * 67.96126 * 6 5 3 9 9 C 1.55162 * 102.86416 * 141.88456 * 8 6 5 10 10 C 1.54910 * 101.58250 * 324.30842 * 9 8 6 11 11 N 1.47027 * 109.88707 * 185.71246 * 6 5 3 12 12 C 1.34771 * 125.64616 * 61.67395 * 11 6 5 13 13 O 1.21287 * 120.00130 * 354.84496 * 12 11 6 14 14 C 1.50702 * 119.99908 * 175.11222 * 12 11 6 15 15 H 1.08995 * 109.47334 * 300.00111 * 14 12 11 16 16 C 1.52997 * 109.46824 * 60.00593 * 14 12 11 17 17 C 1.50704 * 109.46890 * 180.02562 * 14 12 11 18 18 H 1.07995 * 120.00282 * 0.02562 * 17 14 12 19 19 C 1.37880 * 119.99375 * 180.02562 * 17 14 12 20 20 N 1.31509 * 120.00298 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99403 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47373 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47108 * 120.00192 * 21 19 17 24 24 H 1.48499 * 109.46949 * 239.99719 * 21 19 17 25 25 H 1.09005 * 109.47451 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47257 * 300.00731 * 1 2 3 27 27 H 1.09002 * 109.46578 * 60.00542 * 1 2 3 28 28 H 1.09003 * 109.46919 * 65.18161 * 5 3 2 29 29 H 1.08999 * 109.47023 * 305.18512 * 5 3 2 30 30 H 1.09000 * 110.92230 * 23.47659 * 8 6 5 31 31 H 1.08992 * 110.74672 * 260.21627 * 8 6 5 32 32 H 1.09000 * 111.00439 * 206.23267 * 9 8 6 33 33 H 1.09005 * 111.03351 * 82.39357 * 9 8 6 34 34 H 1.09006 * 110.36381 * 278.17052 * 10 9 8 35 35 H 1.08997 * 110.45967 * 155.89315 * 10 9 8 36 36 H 1.09003 * 109.47507 * 179.97438 * 16 14 12 37 37 H 1.08997 * 109.47351 * 299.99626 * 16 14 12 38 38 H 1.09003 * 109.46978 * 59.99895 * 16 14 12 39 39 H 0.97007 * 119.99905 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0004 2.7361 0.1307 7 1 3.5142 3.3392 -0.6361 8 6 3.6319 3.2674 1.5319 9 6 4.8418 4.1712 1.8879 10 6 6.0143 3.3883 1.2461 11 7 5.4609 2.8379 -0.0046 12 6 6.1748 2.4909 -1.0937 13 8 5.6240 1.9649 -2.0376 14 6 7.6586 2.7510 -1.1363 15 1 7.8433 3.8199 -1.0300 16 6 8.3412 1.9991 0.0080 17 6 8.2146 2.2743 -2.4535 18 1 7.5590 1.8280 -3.1865 19 6 9.5602 2.4079 -2.7225 20 7 10.3586 2.9509 -1.8296 21 14 10.2494 1.8163 -4.3549 22 1 9.1524 1.2475 -5.1784 23 1 10.8668 2.9590 -5.0748 24 1 11.2770 0.7728 -4.1092 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 3.9521 0.8629 -0.9320 29 1 3.9598 0.7027 0.8408 30 1 3.5383 2.4493 2.2461 31 1 2.7124 3.8513 1.4938 32 1 4.9679 4.2477 2.9679 33 1 4.7385 5.1585 1.4377 34 1 6.3378 2.5822 1.9048 35 1 6.8467 4.0580 1.0302 36 1 9.4145 2.1868 -0.0230 37 1 7.9391 2.3442 0.9605 38 1 8.1565 0.9301 -0.0985 39 1 11.3054 3.0445 -2.0189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597415559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:43 Heat of formation + Delta-G solvation = -144.514920 kcal Electronic energy + Delta-G solvation = -21398.886602 eV Core-core repulsion = 18112.771712 eV Total energy + Delta-G solvation = -3286.114890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83017 -40.89421 -38.50061 -37.47557 -35.85246 -33.57571 -32.54397 -31.65732 -29.05727 -27.40030 -26.94688 -25.32943 -23.03836 -22.44644 -21.67360 -19.91272 -18.74642 -18.36632 -17.89805 -17.61868 -17.46112 -16.87719 -16.27017 -15.96516 -15.30704 -15.00355 -14.60760 -14.40190 -14.34114 -14.16149 -13.89732 -13.50738 -13.24289 -13.10982 -12.93981 -12.80143 -12.66845 -12.51810 -12.19823 -12.02608 -11.95519 -11.82016 -11.80046 -11.62627 -11.61741 -10.99510 -10.58736 -10.27245 -9.60099 -8.14815 -6.24972 1.08468 1.39108 1.41154 1.53621 1.57962 1.89692 2.25177 2.47664 3.14609 3.53794 3.54419 3.80798 3.90299 4.14701 4.22222 4.28594 4.31154 4.32441 4.39669 4.60704 4.68048 4.74475 4.77063 4.89137 4.92189 5.00373 5.03986 5.08063 5.15584 5.30095 5.35103 5.47556 5.57027 5.75232 5.97870 6.22994 6.64418 6.64807 6.84333 7.39378 7.47920 8.91101 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.004952 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.883001 B = 5652.827288 C = 6485.370576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.476 3.524 4 O -0.527 6.527 5 C -0.125 4.125 6 C 0.144 3.856 7 H 0.054 0.946 8 C -0.113 4.113 9 C -0.121 4.121 10 C 0.092 3.908 11 N -0.621 5.621 12 C 0.534 3.466 13 O -0.584 6.584 14 C 0.031 3.969 15 H 0.037 0.963 16 C -0.125 4.125 17 C -0.529 4.529 18 H 0.047 0.953 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 0.954 3.046 22 H -0.281 1.281 23 H -0.275 1.275 24 H -0.272 1.272 25 H 0.131 0.869 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.020 0.980 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 -1.794 12.337 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.320 3.680 4 O -0.416 6.416 5 C -0.164 4.164 6 C 0.040 3.960 7 H 0.073 0.927 8 C -0.151 4.151 9 C -0.159 4.159 10 C -0.029 4.029 11 N -0.355 5.355 12 C 0.326 3.674 13 O -0.463 6.463 14 C 0.010 3.990 15 H 0.055 0.945 16 C -0.182 4.182 17 C -0.567 4.567 18 H 0.065 0.935 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.780 3.220 22 H -0.206 1.206 23 H -0.200 1.200 24 H -0.198 1.198 25 H 0.149 0.851 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.145 0.855 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.670 -1.760 11.795 18.906 hybrid contribution 0.338 -0.225 -1.409 1.466 sum -14.333 -1.985 10.386 17.811 Atomic orbital electron populations 1.23579 0.74488 1.05753 1.02714 1.86516 1.25347 1.32763 1.83722 1.23557 0.91744 0.81376 0.71296 1.90627 1.67611 1.36827 1.46538 1.21782 0.87690 1.00224 1.06670 1.21339 0.81100 0.93404 1.00133 0.92740 1.22676 0.99383 1.00507 0.92563 1.22834 0.92204 0.98051 1.02824 1.22695 0.97821 0.98118 0.84313 1.48749 1.06717 1.64663 1.15408 1.21423 0.90546 0.75554 0.79884 1.90493 1.73251 1.44764 1.37839 1.18738 0.85919 0.97343 0.96976 0.94525 1.21709 1.03140 0.97504 0.95893 1.21320 0.93634 1.40471 1.01318 0.93493 1.25563 0.96924 0.95180 1.00118 1.69951 1.04874 1.44824 1.35234 0.85566 0.77985 0.78354 0.80106 1.20612 1.20020 1.19771 0.85103 0.91106 0.92343 0.88803 0.85550 0.88918 0.89331 0.86367 0.90746 0.89500 0.90618 0.91212 0.91893 0.96030 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.37 -8.98 10.57 -51.39 -0.54 -9.53 16 3 C 0.48 13.30 7.69 71.23 0.55 13.85 16 4 O -0.53 -16.23 14.78 21.95 0.32 -15.91 16 5 C -0.13 -3.67 5.29 29.84 0.16 -3.51 16 6 C 0.14 4.41 2.55 45.33 0.12 4.52 16 7 H 0.05 1.95 7.83 -2.39 -0.02 1.93 16 8 C -0.11 -2.40 5.58 31.78 0.18 -2.22 16 9 C -0.12 -2.29 7.08 31.99 0.23 -2.06 16 10 C 0.09 2.42 5.10 86.86 0.44 2.86 16 11 N -0.62 -21.96 3.07 -788.07 -2.42 -24.38 16 12 C 0.53 25.10 7.05 87.66 0.62 25.72 16 13 O -0.58 -31.56 14.24 -3.05 -0.04 -31.60 16 14 C 0.03 1.59 1.98 -12.28 -0.02 1.57 16 15 H 0.04 1.96 7.94 -2.39 -0.02 1.94 16 16 C -0.12 -5.61 8.72 71.98 0.63 -4.99 16 17 C -0.53 -30.98 8.38 25.60 0.21 -30.77 16 18 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 19 C 0.02 1.20 5.30 84.66 0.45 1.65 16 20 N -0.91 -50.99 11.32 21.45 0.24 -50.75 16 21 Si 0.95 45.23 29.54 68.60 2.03 47.26 16 22 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 27 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 28 H 0.09 3.42 6.54 -2.39 -0.02 3.40 16 29 H 0.13 3.05 8.00 -2.39 -0.02 3.03 16 30 H 0.09 1.60 7.76 -2.39 -0.02 1.58 16 31 H 0.09 1.87 7.83 -2.39 -0.02 1.85 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.09 1.98 7.27 -2.38 -0.02 1.96 16 35 H 0.08 2.15 7.08 -2.39 -0.02 2.13 16 36 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 37 H 0.06 2.25 4.78 -2.39 -0.01 2.24 16 38 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 Total: -1.00 -71.61 315.10 5.38 -66.22 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.04 Total: 10.42 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 4.75 Total: 8.27 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -2.17 Total: -75.13 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -0.26 Total: -57.04 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -71.61 5.38 -66.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597415559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.294 kcal (2) G-P(sol) polarization free energy of solvation -71.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds