Wall clock time and date at job start Mon Mar 30 2020 04:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00474 * 2 1 4 4 O 1.20828 * 119.99898 * 0.02562 * 3 2 1 5 5 C 1.50709 * 120.00198 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47105 * 174.03905 * 5 3 2 7 7 H 1.08999 * 109.87402 * 53.30069 * 6 5 3 8 8 C 1.54321 * 109.88011 * 292.12249 * 6 5 3 9 9 C 1.55159 * 102.94001 * 218.39207 * 8 6 5 10 10 C 1.54692 * 101.67870 * 35.33688 * 9 8 6 11 11 N 1.47020 * 109.87994 * 174.31655 * 6 5 3 12 12 C 1.34776 * 125.64372 * 298.32029 * 11 6 5 13 13 O 1.21279 * 120.00757 * 354.89068 * 12 11 6 14 14 C 1.50701 * 119.99808 * 174.89931 * 12 11 6 15 15 H 1.09000 * 109.47688 * 59.99500 * 14 12 11 16 16 C 1.53008 * 109.46775 * 299.99411 * 14 12 11 17 17 C 1.50697 * 109.47316 * 179.97438 * 14 12 11 18 18 H 1.07997 * 120.00152 * 359.97438 * 17 14 12 19 19 C 1.37878 * 120.00078 * 180.27142 * 17 14 12 20 20 N 1.31516 * 119.99945 * 359.72457 * 19 17 14 21 21 Si 1.86800 * 120.00079 * 179.72151 * 19 17 14 22 22 H 1.48504 * 109.46891 * 60.00355 * 21 19 17 23 23 H 1.48499 * 109.47382 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47242 * 300.00371 * 21 19 17 25 25 H 1.09000 * 109.46557 * 59.99824 * 1 2 3 26 26 H 1.09000 * 109.47806 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46923 * 300.00299 * 1 2 3 28 28 H 1.09001 * 109.46558 * 54.03761 * 5 3 2 29 29 H 1.09001 * 109.46843 * 294.04002 * 5 3 2 30 30 H 1.08999 * 110.72331 * 336.75451 * 8 6 5 31 31 H 1.09002 * 110.72103 * 99.85262 * 8 6 5 32 32 H 1.09003 * 111.00692 * 153.57956 * 9 8 6 33 33 H 1.09003 * 111.00521 * 277.38861 * 9 8 6 34 34 H 1.08998 * 110.38914 * 204.36887 * 10 9 8 35 35 H 1.09001 * 110.23863 * 82.11001 * 10 9 8 36 36 H 1.08994 * 109.47513 * 299.99909 * 16 14 12 37 37 H 1.08997 * 109.47010 * 60.00288 * 16 14 12 38 38 H 1.09000 * 109.46716 * 179.97438 * 16 14 12 39 39 H 0.97004 * 119.99872 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5665 1.2747 0.0006 6 6 4.0008 2.7341 -0.1493 7 1 3.5139 3.3455 0.6103 8 6 3.6336 3.2489 -1.5570 9 6 4.8470 4.1421 -1.9278 10 6 6.0160 3.3704 -1.2715 11 7 5.4611 2.8375 -0.0139 12 6 6.1739 2.5055 1.0807 13 8 5.6036 2.1681 2.0965 14 6 7.6796 2.5539 1.0427 15 1 8.0050 3.5688 0.8143 16 6 8.1933 1.5986 -0.0365 17 6 8.2296 2.1402 2.3834 18 1 7.5561 1.8698 3.1832 19 6 9.5924 2.1129 2.5908 20 7 10.4125 2.4426 1.6170 21 14 10.2739 1.6077 4.2550 22 1 9.8352 0.2243 4.5703 23 1 11.7575 1.6609 4.2194 24 1 9.7706 2.5365 5.2987 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9611 0.6908 -0.8310 29 1 3.9508 0.8758 0.9394 30 1 3.5367 2.4197 -2.2579 31 1 2.7151 3.8350 -1.5259 32 1 4.9732 4.2006 -3.0089 33 1 4.7468 5.1370 -1.4939 34 1 6.8470 4.0445 -1.0639 35 1 6.3401 2.5553 -1.9185 36 1 7.8681 0.5837 0.1918 37 1 7.7956 1.8982 -1.0061 38 1 9.2824 1.6339 -0.0644 39 1 11.3713 2.4230 1.7628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597415560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:45 Heat of formation + Delta-G solvation = -125.810700 kcal Electronic energy + Delta-G solvation = -21405.246759 eV Core-core repulsion = 18119.942945 eV Total energy + Delta-G solvation = -3285.303814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65854 -39.46328 -37.04301 -36.33449 -33.83362 -32.04524 -31.26053 -29.93444 -28.13845 -26.13055 -25.10867 -23.71147 -21.57698 -21.40406 -20.35169 -18.42739 -17.53685 -16.90398 -16.52638 -16.27231 -15.79902 -15.37056 -14.81768 -14.16597 -14.14792 -13.60834 -13.34109 -13.16563 -13.00023 -12.74465 -12.44913 -12.27511 -12.09119 -11.64439 -11.41569 -11.04496 -10.97415 -10.87293 -10.80864 -10.74716 -10.68648 -10.49462 -10.43245 -10.23125 -9.95328 -8.96286 -8.61488 -8.32397 -8.11026 -6.02219 -4.05320 2.21160 2.62443 3.37202 3.39514 3.44668 3.65769 3.68431 4.47400 4.63409 4.66614 4.87986 4.93796 4.96264 5.03101 5.22364 5.31195 5.33375 5.37780 5.47423 5.68476 5.77193 5.90342 5.96308 6.03566 6.08610 6.19198 6.31906 6.37249 6.65986 6.80275 6.90046 7.01731 7.49102 7.72578 7.76379 8.00811 8.14307 8.40091 9.02756 9.18860 9.60016 11.05356 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.004981 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.807116 B = 5620.430771 C = 6409.491238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.470 3.530 4 O -0.509 6.509 5 C -0.127 4.127 6 C 0.149 3.851 7 H 0.081 0.919 8 C -0.125 4.125 9 C -0.135 4.135 10 C 0.105 3.895 11 N -0.627 5.627 12 C 0.536 3.464 13 O -0.542 6.542 14 C 0.035 3.965 15 H 0.051 0.949 16 C -0.136 4.136 17 C -0.502 4.502 18 H 0.073 0.927 19 C 0.059 3.941 20 N -0.897 5.897 21 Si 0.900 3.100 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.019 0.981 38 H 0.092 0.908 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 -1.237 -10.085 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.313 3.687 4 O -0.396 6.396 5 C -0.166 4.166 6 C 0.045 3.955 7 H 0.099 0.901 8 C -0.163 4.163 9 C -0.173 4.173 10 C -0.018 4.018 11 N -0.364 5.364 12 C 0.328 3.672 13 O -0.418 6.418 14 C 0.014 3.986 15 H 0.069 0.931 16 C -0.194 4.194 17 C -0.540 4.540 18 H 0.091 0.909 19 C -0.141 4.141 20 N -0.536 5.536 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.038 0.962 38 H 0.111 0.889 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.066 -1.136 -9.461 16.990 hybrid contribution 0.183 -0.276 0.812 0.877 sum -13.883 -1.413 -8.649 16.418 Atomic orbital electron populations 1.23233 0.76670 1.03494 1.02442 1.86536 1.23220 1.33786 1.84223 1.23769 0.92051 0.81158 0.71714 1.90638 1.67294 1.36200 1.45517 1.21869 0.86969 1.00682 1.07074 1.21167 0.83166 0.92968 0.98233 0.90061 1.22692 0.98917 0.99807 0.94840 1.22791 0.94615 0.99095 1.00796 1.22274 0.96540 0.97423 0.85549 1.48907 1.05423 1.67059 1.15016 1.21889 0.91600 0.73712 0.79952 1.90532 1.72850 1.47501 1.30891 1.18836 0.83799 0.98067 0.97883 0.93085 1.21826 1.04951 0.97818 0.94790 1.21109 0.91622 1.44905 0.96380 0.90873 1.24934 0.96855 0.95242 0.97115 1.69864 1.03044 1.49029 1.31667 0.86513 0.77292 0.79293 0.84071 1.20201 1.21382 1.20215 0.92016 0.88273 0.91939 0.87739 0.86135 0.91156 0.89812 0.90100 0.90696 0.90032 0.91405 0.95172 0.96186 0.88949 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.65 10.56 -39.24 -0.41 -5.06 16 3 C 0.47 6.74 7.68 36.01 0.28 7.02 16 4 O -0.51 -8.07 14.81 -18.75 -0.28 -8.34 16 5 C -0.13 -1.89 5.30 -27.88 -0.15 -2.03 16 6 C 0.15 2.33 2.49 -66.96 -0.17 2.16 16 7 H 0.08 1.43 7.82 -51.93 -0.41 1.03 16 8 C -0.12 -1.50 5.60 -24.90 -0.14 -1.64 16 9 C -0.13 -1.51 7.07 -24.70 -0.17 -1.69 16 10 C 0.11 1.50 5.30 -2.65 -0.01 1.49 16 11 N -0.63 -11.22 3.05 -163.16 -0.50 -11.71 16 12 C 0.54 12.26 6.91 -10.99 -0.08 12.19 16 13 O -0.54 -14.05 14.64 5.56 0.08 -13.97 16 14 C 0.04 0.87 2.02 -92.92 -0.19 0.68 16 15 H 0.05 1.32 7.76 -51.93 -0.40 0.91 16 16 C -0.14 -3.07 8.81 37.16 0.33 -2.75 16 17 C -0.50 -14.20 8.37 -34.44 -0.29 -14.49 16 18 H 0.07 2.19 6.75 -52.49 -0.35 1.83 16 19 C 0.06 1.64 5.31 -17.82 -0.09 1.54 16 20 N -0.90 -25.00 11.33 55.43 0.63 -24.38 16 21 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.10 1.34 8.00 -51.93 -0.42 0.93 16 29 H 0.12 2.09 6.88 -51.93 -0.36 1.73 16 30 H 0.07 0.76 7.76 -51.93 -0.40 0.35 16 31 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.22 7.51 -51.93 -0.39 0.83 16 35 H 0.07 0.90 6.90 -51.93 -0.36 0.55 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.02 0.37 5.22 -51.93 -0.27 0.10 16 38 H 0.09 2.31 6.08 -51.93 -0.32 1.99 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -32.00 316.35 -6.10 -38.10 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.75 Total: -0.10 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 0.38 Total: 3.89 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.13 Total: -36.09 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.61 Total: -27.37 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.00 -6.10 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597415560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.707 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds