Wall clock time and date at job start Mon Mar 30 2020 04:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00474 * 2 1 4 4 O 1.20828 * 119.99898 * 0.02562 * 3 2 1 5 5 C 1.50709 * 120.00198 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47105 * 174.03905 * 5 3 2 7 7 H 1.08999 * 109.87402 * 53.30069 * 6 5 3 8 8 C 1.54321 * 109.88011 * 292.12249 * 6 5 3 9 9 C 1.55159 * 102.94001 * 218.39207 * 8 6 5 10 10 C 1.54692 * 101.67870 * 35.33688 * 9 8 6 11 11 N 1.47020 * 109.87994 * 174.31655 * 6 5 3 12 12 C 1.34776 * 125.64372 * 298.32029 * 11 6 5 13 13 O 1.21279 * 120.00757 * 354.89068 * 12 11 6 14 14 C 1.50701 * 119.99808 * 174.89931 * 12 11 6 15 15 H 1.09000 * 109.47688 * 59.99500 * 14 12 11 16 16 C 1.53008 * 109.46775 * 299.99411 * 14 12 11 17 17 C 1.50697 * 109.47316 * 179.97438 * 14 12 11 18 18 H 1.07997 * 120.00152 * 359.97438 * 17 14 12 19 19 C 1.37878 * 120.00078 * 180.27142 * 17 14 12 20 20 N 1.31516 * 119.99945 * 359.72457 * 19 17 14 21 21 Si 1.86800 * 120.00079 * 179.72151 * 19 17 14 22 22 H 1.48504 * 109.46891 * 60.00355 * 21 19 17 23 23 H 1.48499 * 109.47382 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47242 * 300.00371 * 21 19 17 25 25 H 1.09000 * 109.46557 * 59.99824 * 1 2 3 26 26 H 1.09000 * 109.47806 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46923 * 300.00299 * 1 2 3 28 28 H 1.09001 * 109.46558 * 54.03761 * 5 3 2 29 29 H 1.09001 * 109.46843 * 294.04002 * 5 3 2 30 30 H 1.08999 * 110.72331 * 336.75451 * 8 6 5 31 31 H 1.09002 * 110.72103 * 99.85262 * 8 6 5 32 32 H 1.09003 * 111.00692 * 153.57956 * 9 8 6 33 33 H 1.09003 * 111.00521 * 277.38861 * 9 8 6 34 34 H 1.08998 * 110.38914 * 204.36887 * 10 9 8 35 35 H 1.09001 * 110.23863 * 82.11001 * 10 9 8 36 36 H 1.08994 * 109.47513 * 299.99909 * 16 14 12 37 37 H 1.08997 * 109.47010 * 60.00288 * 16 14 12 38 38 H 1.09000 * 109.46716 * 179.97438 * 16 14 12 39 39 H 0.97004 * 119.99872 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5665 1.2747 0.0006 6 6 4.0008 2.7341 -0.1493 7 1 3.5139 3.3455 0.6103 8 6 3.6336 3.2489 -1.5570 9 6 4.8470 4.1421 -1.9278 10 6 6.0160 3.3704 -1.2715 11 7 5.4611 2.8375 -0.0139 12 6 6.1739 2.5055 1.0807 13 8 5.6036 2.1681 2.0965 14 6 7.6796 2.5539 1.0427 15 1 8.0050 3.5688 0.8143 16 6 8.1933 1.5986 -0.0365 17 6 8.2296 2.1402 2.3834 18 1 7.5561 1.8698 3.1832 19 6 9.5924 2.1129 2.5908 20 7 10.4125 2.4426 1.6170 21 14 10.2739 1.6077 4.2550 22 1 9.8352 0.2243 4.5703 23 1 11.7575 1.6609 4.2194 24 1 9.7706 2.5365 5.2987 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9611 0.6908 -0.8310 29 1 3.9508 0.8758 0.9394 30 1 3.5367 2.4197 -2.2579 31 1 2.7151 3.8350 -1.5259 32 1 4.9732 4.2006 -3.0089 33 1 4.7468 5.1370 -1.4939 34 1 6.8470 4.0445 -1.0639 35 1 6.3401 2.5553 -1.9185 36 1 7.8681 0.5837 0.1918 37 1 7.7956 1.8982 -1.0061 38 1 9.2824 1.6339 -0.0644 39 1 11.3713 2.4230 1.7628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597415560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:45 Heat of formation + Delta-G solvation = -145.851304 kcal Electronic energy + Delta-G solvation = -21406.115785 eV Core-core repulsion = 18119.942945 eV Total energy + Delta-G solvation = -3286.172840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.83006 -40.88806 -38.51216 -37.48048 -35.83046 -33.54005 -32.59127 -31.66397 -29.06049 -27.33968 -26.99789 -25.31709 -23.08227 -22.45995 -21.63519 -19.87995 -18.75796 -18.34171 -17.91055 -17.60408 -17.48406 -16.85355 -16.35224 -15.94502 -15.34102 -14.99737 -14.58949 -14.41192 -14.33010 -14.15012 -13.92395 -13.50845 -13.22867 -13.09112 -12.93409 -12.79743 -12.67083 -12.50399 -12.19923 -12.02693 -11.99064 -11.86677 -11.80676 -11.63288 -11.60985 -11.01039 -10.59005 -10.29190 -9.59589 -8.14383 -6.24623 1.07835 1.41277 1.42607 1.50612 1.56239 1.90260 2.25044 2.47844 3.15111 3.52491 3.53749 3.81355 3.89680 4.13870 4.22466 4.28494 4.29780 4.32513 4.39139 4.59815 4.68033 4.72448 4.77730 4.88608 4.91908 5.01115 5.03041 5.09653 5.15139 5.29679 5.34718 5.48893 5.56067 5.74810 5.97994 6.22988 6.64041 6.64827 6.84076 7.39420 7.48077 8.91228 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024199 B = 0.004981 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.807116 B = 5620.430771 C = 6409.491238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.477 3.523 4 O -0.526 6.526 5 C -0.124 4.124 6 C 0.143 3.857 7 H 0.054 0.946 8 C -0.113 4.113 9 C -0.121 4.121 10 C 0.092 3.908 11 N -0.621 5.621 12 C 0.534 3.466 13 O -0.585 6.585 14 C 0.032 3.968 15 H 0.037 0.963 16 C -0.120 4.120 17 C -0.531 4.531 18 H 0.046 0.954 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.954 3.046 22 H -0.276 1.276 23 H -0.273 1.273 24 H -0.279 1.279 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.020 0.980 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.508 -1.526 -12.179 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.321 3.679 4 O -0.416 6.416 5 C -0.162 4.162 6 C 0.040 3.960 7 H 0.072 0.928 8 C -0.151 4.151 9 C -0.158 4.158 10 C -0.029 4.029 11 N -0.355 5.355 12 C 0.326 3.674 13 O -0.465 6.465 14 C 0.011 3.989 15 H 0.055 0.945 16 C -0.178 4.178 17 C -0.570 4.570 18 H 0.065 0.935 19 C -0.177 4.177 20 N -0.548 5.548 21 Si 0.779 3.221 22 H -0.201 1.201 23 H -0.198 1.198 24 H -0.204 1.204 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.787 -1.418 -11.614 18.856 hybrid contribution 0.327 -0.182 1.437 1.485 sum -14.460 -1.600 -10.176 17.754 Atomic orbital electron populations 1.23581 0.74464 1.05768 1.02719 1.86514 1.25359 1.32717 1.83710 1.23523 0.91702 0.81391 0.71323 1.90629 1.67603 1.36845 1.46492 1.21747 0.87796 1.00227 1.06458 1.21326 0.81210 0.93408 1.00100 0.92829 1.22675 0.99340 1.00680 0.92397 1.22786 0.92172 0.98148 1.02720 1.22617 0.97782 0.98336 0.84182 1.48753 1.06676 1.65244 1.14835 1.21432 0.91151 0.74050 0.80765 1.90501 1.73327 1.49813 1.32869 1.18737 0.85537 0.97541 0.97065 0.94482 1.21624 1.03338 0.96798 0.96059 1.21258 0.91986 1.46119 0.97589 0.93523 1.25556 0.96891 0.95062 1.00205 1.69938 1.03282 1.48828 1.32774 0.85683 0.77316 0.78724 0.80330 1.20142 1.19790 1.20415 0.91098 0.85082 0.92348 0.85379 0.89153 0.88868 0.89329 0.86295 0.90822 0.90839 0.89479 0.96031 0.92235 0.91196 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.37 -8.91 10.56 -51.34 -0.54 -9.45 16 3 C 0.48 13.26 7.68 71.24 0.55 13.80 16 4 O -0.53 -16.23 14.81 21.96 0.33 -15.90 16 5 C -0.12 -3.61 5.30 29.85 0.16 -3.45 16 6 C 0.14 4.39 2.49 45.34 0.11 4.50 16 7 H 0.05 1.94 7.82 -2.39 -0.02 1.92 16 8 C -0.11 -2.39 5.60 31.78 0.18 -2.21 16 9 C -0.12 -2.27 7.07 31.91 0.23 -2.04 16 10 C 0.09 2.43 5.30 86.78 0.46 2.89 16 11 N -0.62 -21.97 3.05 -788.50 -2.40 -24.38 16 12 C 0.53 25.14 6.91 87.66 0.61 25.75 16 13 O -0.59 -31.87 14.64 -3.03 -0.04 -31.91 16 14 C 0.03 1.64 2.02 -12.28 -0.02 1.61 16 15 H 0.04 1.97 7.76 -2.39 -0.02 1.95 16 16 C -0.12 -5.42 8.81 71.98 0.63 -4.79 16 17 C -0.53 -31.08 8.37 25.60 0.21 -30.86 16 18 H 0.05 2.92 6.75 -2.91 -0.02 2.91 16 19 C 0.02 1.25 5.31 84.65 0.45 1.70 16 20 N -0.91 -50.92 11.33 21.45 0.24 -50.67 16 21 Si 0.95 45.19 29.54 68.60 2.03 47.21 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 26 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 28 H 0.13 3.05 8.00 -2.39 -0.02 3.03 16 29 H 0.09 3.25 6.88 -2.39 -0.02 3.23 16 30 H 0.09 1.59 7.76 -2.39 -0.02 1.57 16 31 H 0.09 1.86 7.86 -2.39 -0.02 1.84 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 2.08 7.51 -2.39 -0.02 2.06 16 35 H 0.09 2.00 6.90 -2.39 -0.02 1.98 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 2.14 5.22 -2.39 -0.01 2.13 16 38 H 0.07 3.49 6.08 -2.39 -0.01 3.47 16 39 H 0.27 14.08 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -71.72 316.35 5.40 -66.32 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.04 Total: 10.24 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.76 Total: 8.55 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.16 Total: -75.05 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.26 Total: -57.27 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.72 5.40 -66.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597415560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.536 kcal (2) G-P(sol) polarization free energy of solvation -71.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds