Wall clock time and date at job start Mon Mar 30 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47198 * 2 1 4 4 C 1.50704 * 109.47289 * 240.00099 * 2 1 3 5 5 H 1.07999 * 119.99633 * 240.00048 * 4 2 1 6 6 C 1.37875 * 120.00012 * 59.99987 * 4 2 1 7 7 N 1.31508 * 120.00019 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99732 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47246 * 90.00181 * 8 6 4 10 10 H 1.48497 * 109.46904 * 209.99919 * 8 6 4 11 11 H 1.48501 * 109.47447 * 329.99679 * 8 6 4 12 12 C 1.50699 * 109.47055 * 119.99988 * 2 1 3 13 13 O 1.21280 * 120.00239 * 120.00322 * 12 2 1 14 14 N 1.34780 * 120.00152 * 300.00211 * 12 2 1 15 15 C 1.46494 * 120.00229 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47209 * 179.97438 * 15 14 12 17 17 N 1.46900 * 109.47114 * 179.97438 * 16 15 14 18 18 C 1.47185 * 110.99887 * 188.93793 * 17 16 15 19 19 C 1.52992 * 108.71825 * 167.62440 * 18 17 16 20 20 N 1.46018 * 110.03907 * 50.30733 * 19 18 17 21 21 C 1.33714 * 122.92358 * 341.83961 * 20 19 18 22 22 O 1.21278 * 118.61847 * 181.68683 * 21 20 19 23 23 C 1.46909 * 110.99602 * 66.05064 * 17 16 15 24 24 H 1.09001 * 109.46914 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47030 * 300.00112 * 1 2 3 26 26 H 1.08995 * 109.46995 * 60.00602 * 1 2 3 27 27 H 0.97002 * 119.99952 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99447 * 359.97438 * 14 12 2 29 29 H 1.09008 * 109.46910 * 60.00015 * 15 14 12 30 30 H 1.08993 * 109.47459 * 300.00328 * 15 14 12 31 31 H 1.09002 * 109.46530 * 60.00094 * 16 15 14 32 32 H 1.08997 * 109.47028 * 300.00658 * 16 15 14 33 33 H 1.08996 * 109.59827 * 287.41046 * 18 17 16 34 34 H 1.09007 * 109.59444 * 47.86678 * 18 17 16 35 35 H 1.09003 * 109.37746 * 290.13187 * 19 18 17 36 36 H 1.09003 * 109.37887 * 170.47797 * 19 18 17 37 37 H 0.96997 * 118.53285 * 162.12828 * 20 19 18 38 38 H 1.09000 * 109.38197 * 53.50775 * 23 17 16 39 39 H 1.08999 * 109.38491 * 293.82036 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4868 -0.1414 -5.1122 11 1 3.6295 -1.7583 -3.7122 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1945 -0.9409 3.6507 16 6 1.6851 -0.2192 4.9000 17 7 2.1738 -0.9124 6.0994 18 6 1.5358 -0.3788 7.3137 19 6 1.8348 -1.3221 8.4805 20 7 3.2667 -1.6009 8.5442 21 6 4.0948 -1.3892 7.5159 22 8 5.2658 -1.6776 7.6442 23 6 3.6352 -0.8096 6.2081 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.7091 1.1614 -3.4844 28 1 1.1493 0.5389 2.5435 29 1 3.2846 -0.9413 3.6509 30 1 1.8309 -1.9684 3.6506 31 1 0.5951 -0.2184 4.8999 32 1 2.0491 0.8082 4.8999 33 1 1.9359 0.6113 7.5321 34 1 0.4581 -0.3147 7.1625 35 1 1.2905 -2.2559 8.3393 36 1 1.5152 -0.8567 9.4129 37 1 3.6327 -1.9594 9.3678 38 1 3.9292 0.2386 6.1536 39 1 4.0984 -1.3569 5.3870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597486963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:17 Heat of formation + Delta-G solvation = -69.252298 kcal Electronic energy + Delta-G solvation = -20416.339924 eV Core-core repulsion = 17165.781417 eV Total energy + Delta-G solvation = -3250.558507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60829 -38.85273 -37.68789 -35.47624 -33.78496 -33.69451 -30.72675 -30.15757 -29.04656 -26.10426 -25.11873 -23.67085 -22.55134 -21.57795 -19.62852 -19.37325 -17.69083 -17.14245 -16.35794 -16.13346 -15.86574 -15.60215 -15.18862 -14.88627 -14.45002 -14.26738 -14.17906 -13.56752 -13.33147 -13.02774 -12.72472 -12.42893 -12.28678 -11.88205 -11.78714 -11.45437 -11.16995 -11.00611 -10.71172 -10.64813 -10.24831 -10.19172 -9.94515 -9.45545 -8.96372 -8.90881 -8.61639 -8.45104 -8.31483 -6.02194 -4.05040 2.32520 2.90004 3.18951 3.35291 3.40901 3.48619 3.75216 4.07282 4.19604 4.32900 4.49406 4.55387 4.72193 4.89789 4.96366 5.02870 5.16915 5.22707 5.31377 5.36332 5.43058 5.85693 5.95931 6.25252 6.30844 6.43858 6.55609 6.61781 6.82857 6.92817 6.93170 7.07262 7.48137 7.76441 7.89015 7.99942 8.15276 8.45332 9.04442 9.25298 9.60736 11.05497 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040748 B = 0.003249 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.985672 B = 8616.599288 C = 9102.542820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.520 3.480 13 O -0.544 6.544 14 N -0.748 5.748 15 C 0.121 3.879 16 C 0.045 3.955 17 N -0.528 5.528 18 C 0.033 3.967 19 C 0.116 3.884 20 N -0.721 5.721 21 C 0.527 3.473 22 O -0.552 6.552 23 C 0.032 3.968 24 H 0.031 0.969 25 H 0.012 0.988 26 H 0.093 0.907 27 H 0.260 0.740 28 H 0.395 0.605 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.076 0.924 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 1.588 22.225 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.419 6.419 14 N -0.403 5.403 15 C -0.004 4.004 16 C -0.083 4.083 17 N -0.254 5.254 18 C -0.096 4.096 19 C -0.009 4.009 20 N -0.374 5.374 21 C 0.314 3.686 22 O -0.429 6.429 23 C -0.098 4.098 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.228 0.772 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.236 0.764 38 H 0.094 0.906 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.561 0.400 21.801 21.954 hybrid contribution 0.171 0.729 -0.309 0.810 sum -2.390 1.129 21.492 21.654 Atomic orbital electron populations 1.21739 0.96546 0.99826 1.00873 1.18872 0.94137 0.96812 0.89347 0.93027 1.21166 1.30921 1.12793 0.89028 0.90764 1.24946 0.95138 0.95054 0.99121 1.69868 1.37250 1.23108 1.23513 0.86452 0.79502 0.79241 0.82032 1.20670 1.21323 1.19712 1.21977 0.78463 0.84298 0.84350 1.90543 1.37824 1.26841 1.86709 1.46209 1.55818 1.32708 1.05588 1.21096 0.99037 0.96966 0.83274 1.22375 1.01145 0.95750 0.89055 1.62406 1.04355 1.56185 1.02477 1.22531 1.01226 0.96237 0.89563 1.21505 0.80935 1.00069 0.98381 1.45546 1.09084 1.66584 1.16174 1.20121 0.85594 0.77489 0.85430 1.90789 1.17519 1.51812 1.82741 1.22424 0.89111 1.01888 0.96386 0.94984 0.96948 0.88878 0.92992 0.77171 0.92200 0.91113 0.89358 0.93574 0.93424 0.88208 0.90564 0.90062 0.76427 0.90636 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.25 8.37 -34.44 -0.29 -14.54 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.52 11.72 7.15 -10.98 -0.08 11.64 16 13 O -0.54 -14.29 15.46 5.56 0.09 -14.21 16 14 N -0.75 -12.33 5.45 -60.30 -0.33 -12.66 16 15 C 0.12 1.68 5.60 -4.04 -0.02 1.66 16 16 C 0.04 0.42 5.06 -3.82 -0.02 0.40 16 17 N -0.53 -4.73 4.73 -236.10 -1.12 -5.84 16 18 C 0.03 0.19 5.60 -3.67 -0.02 0.17 16 19 C 0.12 0.59 7.39 -4.31 -0.03 0.56 16 20 N -0.72 -5.71 5.52 -61.05 -0.34 -6.04 16 21 C 0.53 6.04 7.81 -11.68 -0.09 5.95 16 22 O -0.55 -8.61 17.82 5.56 0.10 -8.51 16 23 C 0.03 0.33 5.17 -5.19 -0.03 0.31 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.01 0.22 7.56 -51.93 -0.39 -0.18 16 26 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.39 5.42 7.89 -40.82 -0.32 5.09 16 29 H 0.06 0.90 6.69 -51.92 -0.35 0.55 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 0.72 7.93 -51.93 -0.41 0.31 16 32 H 0.05 0.40 8.05 -51.93 -0.42 -0.02 16 33 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 34 H 0.10 0.43 7.91 -51.93 -0.41 0.02 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.40 2.69 8.84 -40.82 -0.36 2.32 16 38 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.12 1.41 6.77 -51.93 -0.35 1.06 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -34.72 319.75 -7.53 -42.25 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.77 Total: 2.32 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.59 Total: 5.50 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -1.16 Total: -49.06 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.18 Total: -22.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.72 -7.53 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597486963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.001 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds