Wall clock time and date at job start Mon Mar 30 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47198 * 2 1 4 4 C 1.50704 * 109.47289 * 240.00099 * 2 1 3 5 5 H 1.07999 * 119.99633 * 240.00048 * 4 2 1 6 6 C 1.37875 * 120.00012 * 59.99987 * 4 2 1 7 7 N 1.31508 * 120.00019 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99732 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47246 * 90.00181 * 8 6 4 10 10 H 1.48497 * 109.46904 * 209.99919 * 8 6 4 11 11 H 1.48501 * 109.47447 * 329.99679 * 8 6 4 12 12 C 1.50699 * 109.47055 * 119.99988 * 2 1 3 13 13 O 1.21280 * 120.00239 * 120.00322 * 12 2 1 14 14 N 1.34780 * 120.00152 * 300.00211 * 12 2 1 15 15 C 1.46494 * 120.00229 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47209 * 179.97438 * 15 14 12 17 17 N 1.46900 * 109.47114 * 179.97438 * 16 15 14 18 18 C 1.47185 * 110.99887 * 188.93793 * 17 16 15 19 19 C 1.52992 * 108.71825 * 167.62440 * 18 17 16 20 20 N 1.46018 * 110.03907 * 50.30733 * 19 18 17 21 21 C 1.33714 * 122.92358 * 341.83961 * 20 19 18 22 22 O 1.21278 * 118.61847 * 181.68683 * 21 20 19 23 23 C 1.46909 * 110.99602 * 66.05064 * 17 16 15 24 24 H 1.09001 * 109.46914 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47030 * 300.00112 * 1 2 3 26 26 H 1.08995 * 109.46995 * 60.00602 * 1 2 3 27 27 H 0.97002 * 119.99952 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99447 * 359.97438 * 14 12 2 29 29 H 1.09008 * 109.46910 * 60.00015 * 15 14 12 30 30 H 1.08993 * 109.47459 * 300.00328 * 15 14 12 31 31 H 1.09002 * 109.46530 * 60.00094 * 16 15 14 32 32 H 1.08997 * 109.47028 * 300.00658 * 16 15 14 33 33 H 1.08996 * 109.59827 * 287.41046 * 18 17 16 34 34 H 1.09007 * 109.59444 * 47.86678 * 18 17 16 35 35 H 1.09003 * 109.37746 * 290.13187 * 19 18 17 36 36 H 1.09003 * 109.37887 * 170.47797 * 19 18 17 37 37 H 0.96997 * 118.53285 * 162.12828 * 20 19 18 38 38 H 1.09000 * 109.38197 * 53.50775 * 23 17 16 39 39 H 1.08999 * 109.38491 * 293.82036 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4868 -0.1414 -5.1122 11 1 3.6295 -1.7583 -3.7122 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1945 -0.9409 3.6507 16 6 1.6851 -0.2192 4.9000 17 7 2.1738 -0.9124 6.0994 18 6 1.5358 -0.3788 7.3137 19 6 1.8348 -1.3221 8.4805 20 7 3.2667 -1.6009 8.5442 21 6 4.0948 -1.3892 7.5159 22 8 5.2658 -1.6776 7.6442 23 6 3.6352 -0.8096 6.2081 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.7091 1.1614 -3.4844 28 1 1.1493 0.5389 2.5435 29 1 3.2846 -0.9413 3.6509 30 1 1.8309 -1.9684 3.6506 31 1 0.5951 -0.2184 4.8999 32 1 2.0491 0.8082 4.8999 33 1 1.9359 0.6113 7.5321 34 1 0.4581 -0.3147 7.1625 35 1 1.2905 -2.2559 8.3393 36 1 1.5152 -0.8567 9.4129 37 1 3.6327 -1.9594 9.3678 38 1 3.9292 0.2386 6.1536 39 1 4.0984 -1.3569 5.3870 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597486963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:17 Heat of formation + Delta-G solvation = -98.739840 kcal Electronic energy + Delta-G solvation = -20417.618600 eV Core-core repulsion = 17165.781417 eV Total energy + Delta-G solvation = -3251.837182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39628 -40.51957 -38.59534 -36.43791 -35.74711 -35.00736 -32.58834 -30.85992 -30.15846 -27.22527 -26.95093 -24.65694 -23.86384 -22.70388 -21.06950 -20.27372 -18.45776 -18.38252 -17.90756 -17.67978 -16.94291 -16.74849 -16.41896 -16.16301 -15.70424 -15.48111 -15.29846 -14.65354 -14.58651 -14.27220 -14.22322 -13.56606 -13.44796 -13.03204 -12.95718 -12.75922 -12.57050 -12.54448 -12.41084 -12.21368 -12.06003 -11.99857 -11.10523 -11.01874 -10.59967 -10.30198 -10.12490 -9.94959 -9.56724 -8.14500 -6.24346 1.40958 1.41769 1.45950 1.53667 1.95623 2.15818 2.30530 2.46307 2.93962 3.15201 3.52370 3.78044 3.87916 4.01222 4.18424 4.31808 4.38933 4.45731 4.54703 4.55592 4.78098 4.79097 4.91075 4.93808 4.99058 5.02919 5.07972 5.52303 5.55033 5.65135 5.73481 5.78590 5.93465 5.97346 6.20829 6.24545 6.76724 6.88599 7.10834 7.41486 7.57782 8.91164 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040748 B = 0.003249 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.985672 B = 8616.599288 C = 9102.542820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.043 0.957 4 C -0.531 4.531 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.281 1.281 12 C 0.520 3.480 13 O -0.590 6.590 14 N -0.722 5.722 15 C 0.121 3.879 16 C 0.058 3.942 17 N -0.537 5.537 18 C 0.030 3.970 19 C 0.111 3.889 20 N -0.709 5.709 21 C 0.522 3.478 22 O -0.606 6.606 23 C 0.035 3.965 24 H 0.021 0.979 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.265 0.735 28 H 0.413 0.587 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.406 0.594 38 H 0.086 0.914 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 2.668 23.861 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.309 3.691 13 O -0.470 6.470 14 N -0.376 5.376 15 C -0.003 4.003 16 C -0.070 4.070 17 N -0.264 5.264 18 C -0.097 4.097 19 C -0.012 4.012 20 N -0.360 5.360 21 C 0.309 3.691 22 O -0.487 6.487 23 C -0.096 4.096 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.249 0.751 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.243 0.757 38 H 0.104 0.896 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.607 1.529 23.503 23.999 hybrid contribution 0.728 0.407 -0.733 1.111 sum -3.878 1.935 22.770 23.179 Atomic orbital electron populations 1.21555 0.94763 0.99443 1.01938 1.18812 0.95545 0.95917 0.89430 0.93886 1.21320 1.31590 1.12721 0.91358 0.93596 1.25555 0.95223 0.95737 1.01301 1.69935 1.37234 1.23463 1.24290 0.85635 0.78610 0.78606 0.79278 1.19935 1.19898 1.20585 1.21574 0.78181 0.83653 0.85732 1.90522 1.40034 1.28874 1.87586 1.45832 1.54544 1.32641 1.04622 1.21203 0.98294 0.96679 0.84164 1.22241 1.02288 0.95569 0.86854 1.62358 1.03387 1.56993 1.03650 1.22726 1.02443 0.96574 0.87990 1.21814 0.78792 1.00671 0.99910 1.45586 1.10181 1.64855 1.15396 1.20326 0.85191 0.77231 0.86347 1.90759 1.19807 1.54421 1.83739 1.22285 0.90237 1.01961 0.95071 0.95953 0.92398 0.91186 0.92584 0.75057 0.93698 0.92745 0.86924 0.91973 0.92536 0.85661 0.90039 0.86501 0.75741 0.89647 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.87 71.98 0.64 -4.60 16 2 C 0.02 1.20 2.64 -12.28 -0.03 1.17 16 3 H 0.04 2.19 8.14 -2.38 -0.02 2.18 16 4 C -0.53 -30.99 8.37 25.60 0.21 -30.78 16 5 H 0.05 2.89 6.75 -2.91 -0.02 2.87 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -50.77 11.32 21.45 0.24 -50.53 16 8 Si 0.95 45.20 29.54 68.60 2.03 47.23 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 12 C 0.52 23.60 7.15 87.66 0.63 24.22 16 13 O -0.59 -32.06 15.46 -3.03 -0.05 -32.11 16 14 N -0.72 -22.78 5.45 -463.06 -2.52 -25.30 16 15 C 0.12 3.25 5.60 86.38 0.48 3.73 16 16 C 0.06 0.91 5.06 86.30 0.44 1.35 16 17 N -0.54 -8.29 4.73 -900.87 -4.26 -12.55 16 18 C 0.03 0.23 5.60 86.25 0.48 0.71 16 19 C 0.11 0.73 7.39 86.47 0.64 1.37 16 20 N -0.71 -9.93 5.52 -466.06 -2.57 -12.51 16 21 C 0.52 11.78 7.81 87.68 0.69 12.47 16 22 O -0.61 -19.54 17.82 -3.02 -0.05 -19.60 16 23 C 0.04 0.70 5.17 85.41 0.44 1.14 16 24 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.96 7.56 -2.39 -0.02 1.94 16 26 H 0.07 3.44 6.07 -2.39 -0.01 3.42 16 27 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.41 10.09 7.89 -92.71 -0.73 9.35 16 29 H 0.04 1.37 6.69 -2.38 -0.02 1.35 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 1.29 7.93 -2.39 -0.02 1.27 16 32 H 0.06 0.82 8.05 -2.39 -0.02 0.80 16 33 H 0.06 0.39 8.08 -2.39 -0.02 0.37 16 34 H 0.13 0.40 7.91 -2.38 -0.02 0.38 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.41 4.83 8.84 -92.71 -0.82 4.01 16 38 H 0.09 1.49 8.05 -2.39 -0.02 1.47 16 39 H 0.10 2.39 6.77 -2.39 -0.02 2.38 16 Total: -1.00 -78.62 319.75 -2.60 -81.23 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -0.48 Total: 11.74 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.06 Total: 12.40 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -9.12 Total: -100.89 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.10 Total: -51.70 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -78.62 -2.60 -81.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597486963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.512 kcal (2) G-P(sol) polarization free energy of solvation -78.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds