Wall clock time and date at job start Mon Mar 30 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47367 * 180.02562 * 15 14 12 17 17 N 1.46904 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.47196 * 110.99993 * 169.99689 * 17 16 15 19 19 C 1.52982 * 108.72574 * 54.37111 * 18 17 16 20 20 N 1.46003 * 110.04670 * 50.29255 * 19 18 17 21 21 C 1.33721 * 122.92448 * 341.83656 * 20 19 18 22 22 O 1.21287 * 118.62173 * 181.68690 * 21 20 19 23 23 C 1.46895 * 111.00088 * 292.88872 * 17 16 15 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 29 29 H 1.09009 * 109.46700 * 300.00334 * 15 14 12 30 30 H 1.08998 * 109.47265 * 60.00066 * 15 14 12 31 31 H 1.09000 * 109.47364 * 299.99974 * 16 15 14 32 32 H 1.08998 * 109.47610 * 59.99912 * 16 15 14 33 33 H 1.09004 * 109.58916 * 174.14132 * 18 17 16 34 34 H 1.09000 * 109.59265 * 294.59386 * 18 17 16 35 35 H 1.09008 * 109.37098 * 170.46610 * 19 18 17 36 36 H 1.09001 * 109.37470 * 290.11362 * 19 18 17 37 37 H 0.97000 * 118.53945 * 161.81565 * 20 19 18 38 38 H 1.09007 * 109.38256 * 47.08850 * 23 17 16 39 39 H 1.08999 * 109.38831 * 166.77023 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 6 1.6852 -0.2189 -4.9000 17 7 2.1749 -0.9112 -6.0995 18 6 1.5183 -0.3949 -7.3116 19 6 1.7042 1.1227 -7.3622 20 7 3.1110 1.4614 -7.1673 21 6 3.9961 0.6120 -6.6351 22 8 5.1395 0.9857 -6.4802 23 6 3.6334 -0.7861 -6.2210 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7006 1.1552 3.4844 28 1 1.1493 0.5391 -2.5435 29 1 3.2846 -0.9410 -3.6510 30 1 1.8308 -1.9681 -3.6508 31 1 0.5952 -0.2180 -4.9001 32 1 2.0492 0.8085 -4.8999 33 1 1.9707 -0.8483 -8.1936 34 1 0.4549 -0.6322 -7.2805 35 1 1.3736 1.4953 -8.3318 36 1 1.1083 1.5864 -6.5762 37 1 3.4173 2.3417 -7.4360 38 1 4.0971 -1.0107 -5.2604 39 1 3.9959 -1.4907 -6.9695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597486964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:19 Heat of formation + Delta-G solvation = -65.662781 kcal Electronic energy + Delta-G solvation = -20795.187415 eV Core-core repulsion = 17544.784562 eV Total energy + Delta-G solvation = -3250.402853 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98496 -38.80186 -37.72273 -35.15343 -33.74826 -33.67849 -30.72924 -30.22507 -29.04237 -25.92624 -25.11077 -23.83162 -22.71691 -21.88645 -19.62627 -19.05562 -17.65987 -17.03750 -16.32493 -16.24282 -15.84545 -15.71128 -15.46999 -14.67295 -14.53239 -14.29085 -14.07099 -13.69701 -13.20634 -12.99341 -12.71887 -12.41317 -12.00448 -11.88853 -11.72503 -11.46493 -11.20725 -10.98504 -10.71475 -10.68441 -10.66063 -10.21729 -9.93678 -9.50462 -8.95593 -8.72545 -8.60463 -8.43547 -8.30417 -6.00999 -4.03851 2.29748 2.77501 3.31325 3.36128 3.41633 3.49386 3.76360 4.07741 4.12432 4.40550 4.48310 4.53503 4.58477 4.87597 4.93126 5.02080 5.20821 5.25724 5.32492 5.35362 5.42093 5.85763 5.96040 6.24249 6.29367 6.49271 6.50939 6.62567 6.83896 6.89504 6.93987 7.08121 7.49255 7.77362 7.84708 8.00992 8.16245 8.46280 9.05459 9.26243 9.61803 11.06692 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034671 B = 0.003623 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.393281 B = 7726.154730 C = 7923.372986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.520 3.480 13 O -0.544 6.544 14 N -0.747 5.747 15 C 0.122 3.878 16 C 0.036 3.964 17 N -0.520 5.520 18 C 0.037 3.963 19 C 0.071 3.929 20 N -0.725 5.725 21 C 0.489 3.511 22 O -0.548 6.548 23 C 0.032 3.968 24 H 0.031 0.969 25 H 0.093 0.907 26 H 0.011 0.989 27 H 0.260 0.740 28 H 0.394 0.606 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.121 0.879 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 1.717 -21.968 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.419 6.419 14 N -0.403 5.403 15 C -0.003 4.003 16 C -0.092 4.092 17 N -0.244 5.244 18 C -0.092 4.092 19 C -0.055 4.055 20 N -0.379 5.379 21 C 0.274 3.726 22 O -0.424 6.424 23 C -0.099 4.099 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.228 0.772 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.235 0.765 38 H 0.139 0.861 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.564 0.530 -21.521 21.680 hybrid contribution 0.176 1.330 0.440 1.412 sum -2.388 1.860 -21.081 21.297 Atomic orbital electron populations 1.21736 0.96524 0.99814 1.00864 1.18877 0.94162 0.96823 0.89367 0.93062 1.21157 1.30793 1.12870 0.89006 0.90766 1.24947 0.95104 0.95101 0.99118 1.69867 1.37147 1.23237 1.23493 0.86450 0.78414 0.80309 0.82036 1.20677 1.21317 1.19720 1.21970 0.78446 0.84286 0.84331 1.90538 1.37837 1.26861 1.86710 1.46200 1.55783 1.32683 1.05596 1.21103 0.98949 0.96945 0.83266 1.22439 1.01188 0.96037 0.89528 1.62432 1.03873 1.55666 1.02393 1.22626 1.01870 0.91212 0.93443 1.22148 0.82038 0.98592 1.02762 1.45626 1.09790 1.18219 1.64220 1.21321 0.85308 0.89224 0.76733 1.90788 1.19924 1.77327 1.54394 1.22618 0.89358 0.92100 1.05778 0.94970 0.88855 0.96994 0.93003 0.77233 0.92258 0.90978 0.89331 0.93660 0.89334 0.87956 0.89885 0.91045 0.76514 0.86142 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.86 37.16 0.33 -2.66 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.34 8.38 -34.44 -0.29 -14.62 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.32 11.31 55.43 0.63 -24.69 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 12 C 0.52 11.93 7.15 -10.98 -0.08 11.85 16 13 O -0.54 -14.42 15.46 5.56 0.09 -14.33 16 14 N -0.75 -12.73 5.45 -60.30 -0.33 -13.06 16 15 C 0.12 1.75 5.65 -4.05 -0.02 1.73 16 16 C 0.04 0.36 4.13 -3.83 -0.02 0.34 16 17 N -0.52 -4.50 5.03 -236.11 -1.19 -5.69 16 18 C 0.04 0.20 6.03 -3.67 -0.02 0.18 16 19 C 0.07 0.36 6.46 -4.32 -0.03 0.34 16 20 N -0.72 -5.93 5.33 -61.07 -0.33 -6.25 16 21 C 0.49 5.62 7.06 -11.67 -0.08 5.54 16 22 O -0.55 -8.80 17.83 5.55 0.10 -8.70 16 23 C 0.03 0.32 5.76 -5.20 -0.03 0.29 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 5.68 7.89 -40.82 -0.32 5.36 16 29 H 0.06 0.93 6.36 -51.92 -0.33 0.60 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.05 0.47 6.23 -51.93 -0.32 0.14 16 33 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.25 8.14 -51.92 -0.42 -0.18 16 36 H 0.07 0.37 7.10 -51.93 -0.37 0.00 16 37 H 0.40 3.00 8.84 -40.82 -0.36 2.64 16 38 H 0.12 1.37 6.05 -51.92 -0.31 1.06 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -34.92 314.85 -7.48 -42.40 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.59 Total: 3.60 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.58 Total: 4.98 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -1.21 Total: -49.70 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.18 Total: -23.03 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.92 -7.48 -42.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597486964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.263 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds