Wall clock time and date at job start Mon Mar 30 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47367 * 180.02562 * 15 14 12 17 17 N 1.46904 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.47196 * 110.99993 * 169.99689 * 17 16 15 19 19 C 1.52982 * 108.72574 * 54.37111 * 18 17 16 20 20 N 1.46003 * 110.04670 * 50.29255 * 19 18 17 21 21 C 1.33721 * 122.92448 * 341.83656 * 20 19 18 22 22 O 1.21287 * 118.62173 * 181.68690 * 21 20 19 23 23 C 1.46895 * 111.00088 * 292.88872 * 17 16 15 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 29 29 H 1.09009 * 109.46700 * 300.00334 * 15 14 12 30 30 H 1.08998 * 109.47265 * 60.00066 * 15 14 12 31 31 H 1.09000 * 109.47364 * 299.99974 * 16 15 14 32 32 H 1.08998 * 109.47610 * 59.99912 * 16 15 14 33 33 H 1.09004 * 109.58916 * 174.14132 * 18 17 16 34 34 H 1.09000 * 109.59265 * 294.59386 * 18 17 16 35 35 H 1.09008 * 109.37098 * 170.46610 * 19 18 17 36 36 H 1.09001 * 109.37470 * 290.11362 * 19 18 17 37 37 H 0.97000 * 118.53945 * 161.81565 * 20 19 18 38 38 H 1.09007 * 109.38256 * 47.08850 * 23 17 16 39 39 H 1.08999 * 109.38831 * 166.77023 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 6 1.6852 -0.2189 -4.9000 17 7 2.1749 -0.9112 -6.0995 18 6 1.5183 -0.3949 -7.3116 19 6 1.7042 1.1227 -7.3622 20 7 3.1110 1.4614 -7.1673 21 6 3.9961 0.6120 -6.6351 22 8 5.1395 0.9857 -6.4802 23 6 3.6334 -0.7861 -6.2210 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7006 1.1552 3.4844 28 1 1.1493 0.5391 -2.5435 29 1 3.2846 -0.9410 -3.6510 30 1 1.8308 -1.9681 -3.6508 31 1 0.5952 -0.2180 -4.9001 32 1 2.0492 0.8085 -4.8999 33 1 1.9707 -0.8483 -8.1936 34 1 0.4549 -0.6322 -7.2805 35 1 1.3736 1.4953 -8.3318 36 1 1.1083 1.5864 -6.5762 37 1 3.4173 2.3417 -7.4360 38 1 4.0971 -1.0107 -5.2604 39 1 3.9959 -1.4907 -6.9695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597486964.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:19 Heat of formation + Delta-G solvation = -95.686726 kcal Electronic energy + Delta-G solvation = -20796.489351 eV Core-core repulsion = 17544.784562 eV Total energy + Delta-G solvation = -3251.704789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76075 -40.51694 -38.64695 -36.24983 -35.75101 -34.87349 -32.60982 -30.92020 -30.22095 -27.20469 -26.74927 -24.86358 -23.83979 -23.20129 -21.18408 -19.93814 -18.45245 -18.39138 -17.88542 -17.57856 -17.01480 -16.91933 -16.37637 -16.32568 -15.74171 -15.59320 -15.23502 -14.79883 -14.52542 -14.35747 -13.94723 -13.57378 -13.43047 -12.97273 -12.88323 -12.72747 -12.58691 -12.56467 -12.29300 -12.24281 -12.11972 -12.00542 -11.62919 -11.03259 -10.61261 -10.32106 -10.19007 -9.97068 -9.43459 -8.14893 -6.25016 1.40876 1.41549 1.43306 1.53640 1.93430 2.04937 2.31257 2.47626 2.99864 3.14732 3.48619 3.73105 3.84590 4.01954 4.08255 4.26441 4.36382 4.43933 4.52003 4.63495 4.72829 4.76932 4.87993 4.92105 4.97304 5.00342 5.05803 5.50065 5.51967 5.61145 5.75867 5.80626 5.85464 5.95994 6.17077 6.23013 6.74133 6.86593 7.05158 7.40481 7.55004 8.90850 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034671 B = 0.003623 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.393281 B = 7726.154730 C = 7923.372986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.531 4.531 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.520 3.480 13 O -0.588 6.588 14 N -0.724 5.724 15 C 0.122 3.878 16 C 0.050 3.950 17 N -0.522 5.522 18 C 0.035 3.965 19 C 0.067 3.933 20 N -0.714 5.714 21 C 0.485 3.515 22 O -0.606 6.606 23 C 0.035 3.965 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.265 0.735 28 H 0.411 0.589 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.403 0.597 38 H 0.098 0.902 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 2.250 -23.664 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.309 3.691 13 O -0.468 6.468 14 N -0.378 5.378 15 C -0.002 4.002 16 C -0.079 4.079 17 N -0.246 5.246 18 C -0.092 4.092 19 C -0.058 4.058 20 N -0.366 5.366 21 C 0.271 3.729 22 O -0.487 6.487 23 C -0.096 4.096 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.247 0.753 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.239 0.761 38 H 0.116 0.884 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.613 1.115 -23.280 23.759 hybrid contribution 0.738 1.197 0.880 1.659 sum -3.875 2.312 -22.400 22.850 Atomic orbital electron populations 1.21544 0.94647 0.99530 1.01872 1.18825 0.95667 0.95806 0.89535 0.94210 1.21303 1.31519 1.12807 0.91263 0.93507 1.25574 0.95162 0.95784 1.01357 1.69939 1.37128 1.23618 1.24296 0.85614 0.78357 0.78817 0.79211 1.20181 1.19757 1.20377 1.21568 0.78185 0.83681 0.85655 1.90515 1.39928 1.28804 1.87555 1.45852 1.54548 1.32623 1.04759 1.21222 0.98039 0.96982 0.83994 1.22289 1.02461 0.95138 0.87964 1.62436 1.03019 1.55902 1.03238 1.22832 1.03029 0.91315 0.92021 1.22423 0.79909 0.98569 1.04872 1.45678 1.10785 1.17782 1.62353 1.21617 0.84870 0.90029 0.76392 1.90758 1.22393 1.78446 1.57128 1.22552 0.90317 0.91624 1.05066 0.95759 0.91155 0.92562 0.92587 0.75284 0.94074 0.91839 0.86638 0.93684 0.88222 0.85484 0.86703 0.90217 0.76145 0.88424 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.86 71.98 0.64 -4.63 16 2 C 0.02 1.16 2.64 -12.29 -0.03 1.12 16 3 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 4 C -0.53 -31.19 8.38 25.60 0.21 -30.97 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -51.26 11.31 21.45 0.24 -51.01 16 8 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 12 C 0.52 24.10 7.15 87.66 0.63 24.73 16 13 O -0.59 -32.19 15.46 -3.04 -0.05 -32.24 16 14 N -0.72 -23.87 5.45 -463.06 -2.52 -26.39 16 15 C 0.12 3.40 5.65 86.38 0.49 3.89 16 16 C 0.05 0.85 4.13 86.30 0.36 1.21 16 17 N -0.52 -7.70 5.03 -900.90 -4.53 -12.23 16 18 C 0.04 0.24 6.03 86.24 0.52 0.76 16 19 C 0.07 0.42 6.46 86.47 0.56 0.98 16 20 N -0.71 -10.17 5.33 -466.09 -2.48 -12.65 16 21 C 0.48 10.85 7.06 87.68 0.62 11.47 16 22 O -0.61 -20.02 17.83 -3.05 -0.05 -20.08 16 23 C 0.04 0.67 5.76 85.42 0.49 1.16 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 3.49 6.06 -2.38 -0.01 3.48 16 26 H 0.06 1.95 7.56 -2.38 -0.02 1.93 16 27 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.41 10.82 7.89 -92.71 -0.73 10.09 16 29 H 0.04 1.32 6.36 -2.38 -0.02 1.31 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.12 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.04 0.80 6.23 -2.39 -0.01 0.79 16 33 H 0.10 0.54 8.08 -2.38 -0.02 0.52 16 34 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.11 0.10 8.14 -2.38 -0.02 0.09 16 36 H 0.08 0.45 7.10 -2.39 -0.02 0.44 16 37 H 0.40 5.34 8.84 -92.71 -0.82 4.52 16 38 H 0.10 2.31 6.05 -2.38 -0.01 2.30 16 39 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -78.89 314.85 -2.91 -81.80 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.47 Total: 14.01 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 4.93 Total: 11.32 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -9.29 Total: -102.28 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -0.10 Total: -52.31 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -78.89 -2.91 -81.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597486964.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.888 kcal (2) G-P(sol) polarization free energy of solvation -78.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds