Wall clock time and date at job start Mon Mar 30 2020 04:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.47148 * 2 1 4 4 C 1.34235 * 116.99764 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99807 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.99770 * 300.36254 * 6 4 3 8 8 C 1.54325 * 109.88493 * 61.45550 * 6 4 3 9 9 C 1.55153 * 102.94694 * 141.60769 * 8 6 4 10 10 C 1.54914 * 101.61613 * 324.48174 * 9 8 6 11 11 N 1.47025 * 109.88374 * 179.26138 * 6 4 3 12 12 C 1.34781 * 125.64462 * 61.67796 * 11 6 4 13 13 O 1.21277 * 119.99932 * 355.33959 * 12 11 6 14 14 C 1.50696 * 119.99890 * 175.34323 * 12 11 6 15 15 H 1.09006 * 109.47245 * 34.54448 * 14 12 11 16 16 C 1.53001 * 109.47185 * 274.54754 * 14 12 11 17 17 C 1.50695 * 109.47521 * 154.54510 * 14 12 11 18 18 H 1.08010 * 119.99517 * 359.97438 * 17 14 12 19 19 C 1.37868 * 120.00653 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99738 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00501 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47270 * 90.00075 * 21 19 17 23 23 H 1.48502 * 109.47188 * 209.99907 * 21 19 17 24 24 H 1.48498 * 109.47213 * 329.99920 * 21 19 17 25 25 H 1.08998 * 109.47343 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47177 * 59.99895 * 1 2 3 27 27 H 1.08996 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47343 * 239.99872 * 2 1 3 29 29 H 1.09004 * 109.47177 * 120.00105 * 2 1 3 30 30 H 1.09003 * 110.71839 * 23.24520 * 8 6 4 31 31 H 1.09000 * 110.87074 * 260.05092 * 8 6 4 32 32 H 1.09006 * 110.99894 * 82.57021 * 9 8 6 33 33 H 1.08991 * 111.00471 * 206.38558 * 9 8 6 34 34 H 1.08997 * 110.36728 * 155.86164 * 10 9 8 35 35 H 1.08996 * 110.36546 * 278.18945 * 10 9 8 36 36 H 1.09000 * 109.46942 * 304.80836 * 16 14 12 37 37 H 1.08997 * 109.47477 * 64.80287 * 16 14 12 38 38 H 1.08991 * 109.47702 * 184.80792 * 16 14 12 39 39 H 0.97001 * 120.00339 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4792 -0.8843 8 6 3.4800 3.6882 1.2742 9 6 4.7469 4.4983 1.6561 10 6 5.8771 3.5194 1.2507 11 7 5.3894 2.8710 0.0186 12 6 6.1624 2.3111 -0.9330 13 8 5.6502 1.7307 -1.8666 14 6 7.6633 2.4063 -0.8369 15 1 7.9635 2.3684 0.2103 16 6 8.1313 3.7259 -1.4540 17 6 8.2885 1.2544 -1.5807 18 1 7.6615 0.5259 -2.0734 19 6 9.6606 1.1303 -1.6323 20 7 10.4240 2.0171 -1.0319 21 14 10.4354 -0.2980 -2.5536 22 1 10.6662 0.0921 -3.9678 23 1 11.7311 -0.6513 -1.9199 24 1 9.5250 -1.4701 -2.5057 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.2188 2.9852 2.0652 31 1 2.6447 4.3556 1.0622 32 1 4.8068 5.4233 1.0824 33 1 4.7721 4.7025 2.7264 34 1 6.7994 4.0656 1.0533 35 1 6.0347 2.7772 2.0331 36 1 7.7581 3.8018 -2.4753 37 1 7.7482 4.5588 -0.8645 38 1 9.2207 3.7572 -1.4620 39 1 11.3894 1.9302 -1.0685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597511854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:35 Heat of formation + Delta-G solvation = -123.747442 kcal Electronic energy + Delta-G solvation = -21594.496478 eV Core-core repulsion = 18309.282133 eV Total energy + Delta-G solvation = -3285.214344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58991 -38.97098 -36.83460 -36.16333 -33.70835 -31.91610 -31.32819 -30.22324 -29.29461 -25.14251 -24.47181 -23.44591 -22.09135 -21.56831 -20.44199 -18.54605 -17.68145 -16.54927 -16.37575 -16.22333 -15.72884 -15.32771 -14.47481 -14.08326 -13.87366 -13.73279 -13.23857 -13.15259 -12.93646 -12.68520 -12.35037 -12.13256 -12.02720 -11.69253 -11.50516 -11.38533 -11.09964 -10.97753 -10.88434 -10.61336 -10.59388 -10.41706 -10.26082 -10.06939 -9.95153 -8.96380 -8.59439 -8.28518 -8.17935 -5.99610 -4.02340 2.54109 2.67635 3.37046 3.41996 3.48939 3.61820 3.81577 4.47452 4.52345 4.57333 4.80634 4.88143 4.94443 5.07849 5.23587 5.25422 5.33711 5.46654 5.62253 5.66115 5.69876 5.78657 5.84030 5.89094 5.96941 6.07411 6.20824 6.60531 6.66781 6.77258 6.90101 7.02659 7.47367 7.80353 7.99895 8.09547 8.16777 8.42192 9.04101 9.24987 9.62081 11.07741 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.005702 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.040916 B = 4909.390446 C = 5918.682343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.365 6.365 4 C 0.445 3.555 5 O -0.474 6.474 6 C 0.147 3.853 7 H 0.105 0.895 8 C -0.116 4.116 9 C -0.133 4.133 10 C 0.102 3.898 11 N -0.618 5.618 12 C 0.544 3.456 13 O -0.532 6.532 14 C 0.039 3.961 15 H 0.046 0.954 16 C -0.130 4.130 17 C -0.495 4.495 18 H 0.069 0.931 19 C 0.059 3.941 20 N -0.897 5.897 21 Si 0.900 3.100 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.013 0.987 38 H 0.097 0.903 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 5.136 7.513 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.283 6.283 4 C 0.284 3.716 5 O -0.357 6.357 6 C 0.040 3.960 7 H 0.123 0.877 8 C -0.154 4.154 9 C -0.171 4.171 10 C -0.020 4.020 11 N -0.356 5.356 12 C 0.337 3.663 13 O -0.405 6.405 14 C 0.018 3.982 15 H 0.064 0.936 16 C -0.189 4.189 17 C -0.534 4.534 18 H 0.087 0.913 19 C -0.142 4.142 20 N -0.536 5.536 21 Si 0.728 3.272 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.115 0.885 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.844 4.446 6.934 17.857 hybrid contribution 0.432 -1.030 -0.449 1.204 sum -15.412 3.416 6.485 17.066 Atomic orbital electron populations 1.21780 0.92864 1.02706 1.03279 1.22946 0.94980 0.80830 1.02583 1.86470 1.24980 1.31944 1.84870 1.24261 0.80408 0.93501 0.73393 1.90736 1.60054 1.42453 1.42449 1.21016 0.84214 0.89309 1.01412 0.87709 1.22560 0.98858 0.98882 0.95119 1.22838 0.93724 0.98382 1.02111 1.22328 0.98044 0.94959 0.86710 1.48893 1.02820 1.60747 1.23160 1.21880 0.90748 0.74501 0.79216 1.90541 1.75609 1.40811 1.33585 1.18837 0.83533 0.96740 0.99107 0.93579 1.21710 1.05239 0.94040 0.97865 1.21088 0.91347 1.08505 1.32451 0.91295 1.24914 0.97015 0.96571 0.95661 1.69861 1.04512 1.35209 1.44061 0.86446 0.78313 0.82667 0.79777 1.20605 1.21246 1.19819 0.91649 0.91559 0.90496 0.91327 0.91556 0.90398 0.89003 0.90100 0.89589 0.89203 0.91663 0.95040 0.96773 0.88495 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -5.48 10.19 -39.27 -0.40 -5.88 16 4 C 0.45 8.11 6.76 36.00 0.24 8.35 16 5 O -0.47 -10.81 14.63 -24.75 -0.36 -11.17 16 6 C 0.15 2.35 3.40 -68.10 -0.23 2.12 16 7 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 8 C -0.12 -1.25 6.44 -24.90 -0.16 -1.41 16 9 C -0.13 -1.35 7.08 -24.58 -0.17 -1.52 16 10 C 0.10 1.53 6.37 -2.47 -0.02 1.51 16 11 N -0.62 -11.90 2.85 -164.24 -0.47 -12.37 16 12 C 0.54 13.45 6.21 -10.99 -0.07 13.38 16 13 O -0.53 -14.96 14.84 -11.71 -0.17 -15.14 16 14 C 0.04 1.02 1.94 -92.93 -0.18 0.84 16 15 H 0.05 1.22 7.24 -51.93 -0.38 0.84 16 16 C -0.13 -3.14 8.98 37.16 0.33 -2.81 16 17 C -0.50 -14.70 8.33 -34.45 -0.29 -14.98 16 18 H 0.07 2.19 7.04 -52.48 -0.37 1.82 16 19 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 20 N -0.90 -25.60 11.29 55.43 0.63 -24.98 16 21 Si 0.90 22.52 29.54 -169.99 -5.02 17.49 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 29 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.08 0.81 7.84 -51.93 -0.41 0.41 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.36 6.67 -51.93 -0.35 1.02 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.01 0.28 7.39 -51.93 -0.38 -0.11 16 38 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -35.50 321.91 -6.95 -42.45 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.98 Total: -2.40 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.02 Total: 7.14 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.16 Total: -37.35 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.94 Total: -32.19 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.50 -6.95 -42.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.300 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds