Wall clock time and date at job start Mon Mar 30 2020 04:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.47148 * 2 1 4 4 C 1.34235 * 116.99764 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99807 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.99770 * 300.36254 * 6 4 3 8 8 C 1.54325 * 109.88493 * 61.45550 * 6 4 3 9 9 C 1.55153 * 102.94694 * 141.60769 * 8 6 4 10 10 C 1.54914 * 101.61613 * 324.48174 * 9 8 6 11 11 N 1.47025 * 109.88374 * 179.26138 * 6 4 3 12 12 C 1.34781 * 125.64462 * 61.67796 * 11 6 4 13 13 O 1.21277 * 119.99932 * 355.33959 * 12 11 6 14 14 C 1.50696 * 119.99890 * 175.34323 * 12 11 6 15 15 H 1.09006 * 109.47245 * 34.54448 * 14 12 11 16 16 C 1.53001 * 109.47185 * 274.54754 * 14 12 11 17 17 C 1.50695 * 109.47521 * 154.54510 * 14 12 11 18 18 H 1.08010 * 119.99517 * 359.97438 * 17 14 12 19 19 C 1.37868 * 120.00653 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99738 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00501 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47270 * 90.00075 * 21 19 17 23 23 H 1.48502 * 109.47188 * 209.99907 * 21 19 17 24 24 H 1.48498 * 109.47213 * 329.99920 * 21 19 17 25 25 H 1.08998 * 109.47343 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47177 * 59.99895 * 1 2 3 27 27 H 1.08996 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47343 * 239.99872 * 2 1 3 29 29 H 1.09004 * 109.47177 * 120.00105 * 2 1 3 30 30 H 1.09003 * 110.71839 * 23.24520 * 8 6 4 31 31 H 1.09000 * 110.87074 * 260.05092 * 8 6 4 32 32 H 1.09006 * 110.99894 * 82.57021 * 9 8 6 33 33 H 1.08991 * 111.00471 * 206.38558 * 9 8 6 34 34 H 1.08997 * 110.36728 * 155.86164 * 10 9 8 35 35 H 1.08996 * 110.36546 * 278.18945 * 10 9 8 36 36 H 1.09000 * 109.46942 * 304.80836 * 16 14 12 37 37 H 1.08997 * 109.47477 * 64.80287 * 16 14 12 38 38 H 1.08991 * 109.47702 * 184.80792 * 16 14 12 39 39 H 0.97001 * 120.00339 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4792 -0.8843 8 6 3.4800 3.6882 1.2742 9 6 4.7469 4.4983 1.6561 10 6 5.8771 3.5194 1.2507 11 7 5.3894 2.8710 0.0186 12 6 6.1624 2.3111 -0.9330 13 8 5.6502 1.7307 -1.8666 14 6 7.6633 2.4063 -0.8369 15 1 7.9635 2.3684 0.2103 16 6 8.1313 3.7259 -1.4540 17 6 8.2885 1.2544 -1.5807 18 1 7.6615 0.5259 -2.0734 19 6 9.6606 1.1303 -1.6323 20 7 10.4240 2.0171 -1.0319 21 14 10.4354 -0.2980 -2.5536 22 1 10.6662 0.0921 -3.9678 23 1 11.7311 -0.6513 -1.9199 24 1 9.5250 -1.4701 -2.5057 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.2188 2.9852 2.0652 31 1 2.6447 4.3556 1.0622 32 1 4.8068 5.4233 1.0824 33 1 4.7721 4.7025 2.7264 34 1 6.7994 4.0656 1.0533 35 1 6.0347 2.7772 2.0331 36 1 7.7581 3.8018 -2.4753 37 1 7.7482 4.5588 -0.8645 38 1 9.2207 3.7572 -1.4620 39 1 11.3894 1.9302 -1.0685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597511854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:33 Heat of formation + Delta-G solvation = -146.690660 kcal Electronic energy + Delta-G solvation = -21595.491370 eV Core-core repulsion = 18309.282133 eV Total energy + Delta-G solvation = -3286.209237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.00363 -40.52327 -38.38025 -37.56437 -35.83123 -33.24764 -32.66215 -31.87210 -30.56930 -27.30530 -25.79277 -24.85307 -23.48801 -22.68348 -21.83606 -20.12117 -19.02270 -18.42292 -17.97738 -17.73680 -17.17489 -17.03991 -16.23436 -15.48616 -15.30228 -15.25098 -14.71756 -14.41319 -14.26809 -13.92641 -13.74551 -13.56481 -13.23765 -13.07380 -12.95674 -12.81269 -12.64181 -12.58026 -12.51655 -12.32935 -12.08478 -12.06892 -11.81354 -11.58934 -11.40906 -11.12278 -10.65089 -10.36029 -9.73639 -8.19646 -6.30367 1.13253 1.35032 1.36201 1.38357 1.49290 1.98545 2.14294 2.42699 3.08824 3.44329 3.49420 3.79604 3.92704 4.01800 4.05930 4.20898 4.26445 4.29289 4.50610 4.67140 4.77561 4.78034 4.83653 4.89306 4.92094 4.94678 5.02641 5.09215 5.10941 5.29721 5.33810 5.39882 5.46315 5.67103 5.90976 6.15305 6.55333 6.71401 6.74887 7.33558 7.44033 8.86063 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.005702 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.040916 B = 4909.390446 C = 5918.682343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.445 3.555 5 O -0.532 6.532 6 C 0.135 3.865 7 H 0.114 0.886 8 C -0.102 4.102 9 C -0.113 4.113 10 C 0.087 3.913 11 N -0.618 5.618 12 C 0.541 3.459 13 O -0.581 6.581 14 C 0.036 3.964 15 H 0.038 0.962 16 C -0.116 4.116 17 C -0.530 4.530 18 H 0.034 0.966 19 C 0.024 3.976 20 N -0.906 5.906 21 Si 0.955 3.045 22 H -0.272 1.272 23 H -0.267 1.267 24 H -0.285 1.285 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.516 6.843 9.014 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.287 3.713 5 O -0.419 6.419 6 C 0.029 3.971 7 H 0.132 0.868 8 C -0.140 4.140 9 C -0.150 4.150 10 C -0.035 4.035 11 N -0.353 5.353 12 C 0.333 3.667 13 O -0.460 6.460 14 C 0.015 3.985 15 H 0.056 0.944 16 C -0.174 4.174 17 C -0.568 4.568 18 H 0.052 0.948 19 C -0.176 4.176 20 N -0.545 5.545 21 Si 0.780 3.220 22 H -0.197 1.197 23 H -0.192 1.192 24 H -0.210 1.210 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.338 6.213 8.495 20.283 hybrid contribution 0.825 -1.579 -0.863 1.980 sum -16.514 4.634 7.632 18.773 Atomic orbital electron populations 1.21790 0.89114 1.04442 1.04164 1.23264 0.97806 0.79616 1.01612 1.86473 1.23166 1.33267 1.84000 1.24790 0.80999 0.93825 0.71700 1.90721 1.61469 1.44358 1.45390 1.21521 0.81911 0.88727 1.04898 0.86825 1.22676 1.00255 0.98904 0.92141 1.22858 0.90481 0.97198 1.04511 1.22696 1.00130 0.95890 0.84744 1.48714 1.04623 1.59054 1.22938 1.21457 0.90701 0.74715 0.79867 1.90498 1.76290 1.43192 1.35973 1.18740 0.85186 0.96585 0.98012 0.94425 1.21506 1.03771 0.94414 0.97673 1.21161 0.92001 1.09677 1.33995 0.94767 1.25536 0.97039 0.98807 0.96169 1.69917 1.04946 1.35796 1.43838 0.85615 0.77785 0.79419 0.79166 1.19697 1.19189 1.21043 0.90142 0.91204 0.88345 0.93386 0.91682 0.89850 0.85048 0.88417 0.86006 0.89674 0.92027 0.96225 0.92997 0.90460 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.05 1.30 6.19 71.98 0.45 1.74 16 3 O -0.35 -10.33 10.19 -51.47 -0.52 -10.85 16 4 C 0.44 16.33 6.76 71.24 0.48 16.82 16 5 O -0.53 -25.42 14.63 27.72 0.41 -25.01 16 6 C 0.14 4.15 3.40 44.59 0.15 4.30 16 7 H 0.11 3.30 8.14 -2.39 -0.02 3.29 16 8 C -0.10 -1.78 6.44 31.78 0.20 -1.58 16 9 C -0.11 -1.80 7.08 31.99 0.23 -1.57 16 10 C 0.09 2.46 6.37 86.84 0.55 3.01 16 11 N -0.62 -23.79 2.85 -791.92 -2.25 -26.04 16 12 C 0.54 27.73 6.21 87.66 0.54 28.28 16 13 O -0.58 -34.53 14.84 13.49 0.20 -34.33 16 14 C 0.04 1.95 1.94 -12.29 -0.02 1.92 16 15 H 0.04 2.06 7.24 -2.38 -0.02 2.05 16 16 C -0.12 -5.64 8.98 71.98 0.65 -4.99 16 17 C -0.53 -32.87 8.33 25.60 0.21 -32.66 16 18 H 0.03 2.31 7.04 -2.91 -0.02 2.29 16 19 C 0.02 1.40 5.29 84.65 0.45 1.85 16 20 N -0.91 -52.04 11.29 21.44 0.24 -51.80 16 21 Si 0.95 46.95 29.54 68.60 2.03 48.98 16 22 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 30 H 0.08 1.42 7.84 -2.39 -0.02 1.40 16 31 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 2.47 6.67 -2.39 -0.02 2.45 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 2.07 7.39 -2.39 -0.02 2.05 16 38 H 0.08 4.07 5.95 -2.39 -0.01 4.06 16 39 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -82.68 321.91 5.76 -76.92 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.03 Total: 6.40 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 4.63 Total: 15.73 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.01 Total: -77.84 kcal Atomic # 8 Polarization: -70.27 SS G_CDS: 0.08 Total: -70.19 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -82.68 5.76 -76.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.770 kcal (2) G-P(sol) polarization free energy of solvation -82.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds