Wall clock time and date at job start Mon Mar 30 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47131 * 2 1 4 4 C 1.34238 * 116.99580 * 179.97438 * 3 2 1 5 5 O 1.20817 * 120.00118 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99406 * 180.02562 * 4 3 2 7 7 H 1.09001 * 110.00302 * 301.09795 * 6 4 3 8 8 C 1.54314 * 109.77786 * 62.25635 * 6 4 3 9 9 C 1.55144 * 102.86778 * 141.87971 * 8 6 4 10 10 C 1.54911 * 101.58273 * 324.30401 * 9 8 6 11 11 N 1.47025 * 109.87785 * 180.02562 * 6 4 3 12 12 C 1.34775 * 125.64803 * 61.68242 * 11 6 4 13 13 O 1.21283 * 119.99917 * 359.71056 * 12 11 6 14 14 C 1.50703 * 120.00072 * 179.71609 * 12 11 6 15 15 H 1.09007 * 109.46560 * 299.99774 * 14 12 11 16 16 C 1.52998 * 109.47077 * 59.99775 * 14 12 11 17 17 C 1.50701 * 109.47151 * 180.02562 * 14 12 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 12 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 14 12 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 H 1.09000 * 109.46943 * 60.00131 * 1 2 3 26 26 H 1.08998 * 109.47507 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47298 * 300.00156 * 1 2 3 28 28 H 1.09001 * 109.47298 * 239.99844 * 2 1 3 29 29 H 1.09008 * 109.46771 * 120.00159 * 2 1 3 30 30 H 1.09004 * 110.92023 * 23.46361 * 8 6 4 31 31 H 1.08999 * 110.58937 * 260.14560 * 8 6 4 32 32 H 1.09000 * 111.00884 * 206.22761 * 9 8 6 33 33 H 1.08999 * 111.00705 * 82.37943 * 9 8 6 34 34 H 1.08994 * 110.36685 * 278.16931 * 10 9 8 35 35 H 1.09003 * 110.36743 * 155.84721 * 10 9 8 36 36 H 1.09004 * 109.46783 * 180.02562 * 16 14 12 37 37 H 1.09005 * 109.46870 * 300.00040 * 16 14 12 38 38 H 1.08998 * 109.47156 * 59.99979 * 16 14 12 39 39 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5747 3.4843 -0.8759 8 6 3.4952 3.6778 1.2864 9 6 4.7646 4.4908 1.6531 10 6 5.8915 3.5165 1.2282 11 7 5.3895 2.8708 0.0010 12 6 6.1506 2.3168 -0.9634 13 8 5.6271 1.8116 -1.9338 14 6 7.6522 2.3249 -0.8360 15 1 8.0065 3.3542 -0.7797 16 6 8.0604 1.5749 0.4336 17 6 8.2619 1.6493 -2.0372 18 1 7.6257 1.2532 -2.8148 19 6 9.6317 1.5312 -2.1403 20 7 10.4065 2.0131 -1.1932 21 14 10.3872 0.6868 -3.6255 22 1 10.6428 1.6912 -4.6891 23 1 11.6676 0.0457 -3.2323 24 1 9.4519 -0.3475 -4.1359 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2474 2.9714 2.0787 31 1 2.6557 4.3433 1.0852 32 1 4.8045 4.6912 2.7238 33 1 4.8135 5.4178 1.0818 34 1 6.0627 2.7723 2.0059 35 1 6.8094 4.0661 1.0192 36 1 9.1465 1.5811 0.5259 37 1 7.6194 2.0640 1.3022 38 1 7.7061 0.5456 0.3773 39 1 11.3701 1.9297 -1.2655 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597511855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:37 Heat of formation + Delta-G solvation = -120.994625 kcal Electronic energy + Delta-G solvation = -21661.173448 eV Core-core repulsion = 18376.078474 eV Total energy + Delta-G solvation = -3285.094973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.61886 -39.01060 -36.81548 -36.18596 -33.73963 -31.94769 -31.40401 -30.22190 -29.18406 -25.12532 -24.51643 -23.44372 -22.02921 -21.47474 -20.56855 -18.67724 -17.67896 -16.54678 -16.28479 -16.19423 -15.73255 -15.32310 -14.52067 -14.12817 -14.05498 -13.47374 -13.27699 -13.15117 -12.91122 -12.78910 -12.53419 -12.08699 -11.96282 -11.67945 -11.54071 -11.38981 -11.05096 -10.96153 -10.89735 -10.66514 -10.46118 -10.43244 -10.17822 -10.06866 -9.91218 -8.90843 -8.58961 -8.28795 -8.17753 -5.98211 -4.00590 2.51679 2.66186 3.37336 3.42467 3.49635 3.61975 3.81966 4.47152 4.51938 4.57084 4.79911 4.87089 4.93481 5.06838 5.22738 5.24914 5.35198 5.45776 5.61386 5.65229 5.68891 5.77931 5.83484 5.89180 5.96518 6.05447 6.20741 6.58561 6.68784 6.80373 6.95298 7.04208 7.54571 7.81356 7.99862 8.08752 8.17718 8.43419 9.07696 9.25321 9.64196 11.09505 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.005545 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.624772 B = 5048.751485 C = 5913.187809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.447 3.553 5 O -0.477 6.477 6 C 0.147 3.853 7 H 0.106 0.894 8 C -0.116 4.116 9 C -0.134 4.134 10 C 0.104 3.896 11 N -0.617 5.617 12 C 0.543 3.457 13 O -0.532 6.532 14 C 0.039 3.961 15 H 0.052 0.948 16 C -0.137 4.137 17 C -0.498 4.498 18 H 0.073 0.927 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.900 3.100 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.019 0.981 38 H 0.031 0.969 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 4.157 8.772 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.286 3.714 5 O -0.360 6.360 6 C 0.040 3.960 7 H 0.124 0.876 8 C -0.154 4.154 9 C -0.173 4.173 10 C -0.019 4.019 11 N -0.355 5.355 12 C 0.336 3.664 13 O -0.406 6.406 14 C 0.018 3.982 15 H 0.069 0.931 16 C -0.194 4.194 17 C -0.537 4.537 18 H 0.091 0.909 19 C -0.142 4.142 20 N -0.537 5.537 21 Si 0.728 3.272 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.864 3.488 8.179 18.186 hybrid contribution 0.443 -0.755 -0.731 1.140 sum -15.421 2.733 7.449 17.342 Atomic orbital electron populations 1.21782 0.92846 1.02717 1.03297 1.22951 0.95006 0.80803 1.02575 1.86472 1.24941 1.31964 1.84811 1.24262 0.80413 0.93491 0.73218 1.90721 1.60101 1.42501 1.42704 1.21022 0.84284 0.89329 1.01361 0.87639 1.22559 0.98936 0.98943 0.94961 1.22874 0.93812 0.98455 1.02110 1.22399 0.97680 0.94866 0.86929 1.48842 1.02799 1.60939 1.22925 1.21888 0.90990 0.74082 0.79481 1.90535 1.75041 1.43809 1.31245 1.18819 0.83564 0.98678 0.97155 0.93064 1.21844 1.04647 0.98346 0.94599 1.21152 0.91422 1.36702 1.04398 0.90887 1.24926 0.97007 0.95661 0.96596 1.69871 1.04190 1.46704 1.32930 0.86451 0.78306 0.79787 0.82671 1.20667 1.21286 1.19796 0.91543 0.90485 0.91642 0.91318 0.91551 0.90366 0.89015 0.89591 0.90108 0.91361 0.89348 0.88949 0.96236 0.95027 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -5.42 10.19 -39.28 -0.40 -5.82 16 4 C 0.45 8.05 6.76 36.00 0.24 8.29 16 5 O -0.48 -10.68 14.81 -23.95 -0.35 -11.04 16 6 C 0.15 2.32 3.37 -68.11 -0.23 2.09 16 7 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 8 C -0.12 -1.23 6.44 -24.91 -0.16 -1.39 16 9 C -0.13 -1.35 7.08 -24.59 -0.17 -1.53 16 10 C 0.10 1.53 5.14 -2.50 -0.01 1.52 16 11 N -0.62 -11.76 2.84 -164.29 -0.47 -12.23 16 12 C 0.54 13.39 6.38 -10.98 -0.07 13.32 16 13 O -0.53 -14.97 14.73 -8.47 -0.12 -15.09 16 14 C 0.04 1.01 1.99 -92.92 -0.18 0.83 16 15 H 0.05 1.35 7.85 -51.93 -0.41 0.95 16 16 C -0.14 -3.33 8.78 37.16 0.33 -3.01 16 17 C -0.50 -14.74 8.38 -34.44 -0.29 -15.03 16 18 H 0.07 2.30 6.75 -52.49 -0.35 1.94 16 19 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 20 N -0.90 -25.70 11.31 55.43 0.63 -25.07 16 21 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.07 0.82 8.13 -51.92 -0.42 0.40 16 30 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.00 7.08 -51.93 -0.37 0.63 16 35 H 0.09 1.32 7.36 -51.93 -0.38 0.94 16 36 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 37 H 0.02 0.39 5.00 -51.93 -0.26 0.13 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -35.44 318.50 -6.83 -42.27 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.86 Total: -2.02 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.03 Total: 6.74 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.16 Total: -37.30 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.88 Total: -31.96 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.44 -6.83 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.726 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds