Wall clock time and date at job start Mon Mar 30 2020 04:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47131 * 2 1 4 4 C 1.34238 * 116.99580 * 179.97438 * 3 2 1 5 5 O 1.20817 * 120.00118 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99406 * 180.02562 * 4 3 2 7 7 H 1.09001 * 110.00302 * 301.09795 * 6 4 3 8 8 C 1.54314 * 109.77786 * 62.25635 * 6 4 3 9 9 C 1.55144 * 102.86778 * 141.87971 * 8 6 4 10 10 C 1.54911 * 101.58273 * 324.30401 * 9 8 6 11 11 N 1.47025 * 109.87785 * 180.02562 * 6 4 3 12 12 C 1.34775 * 125.64803 * 61.68242 * 11 6 4 13 13 O 1.21283 * 119.99917 * 359.71056 * 12 11 6 14 14 C 1.50703 * 120.00072 * 179.71609 * 12 11 6 15 15 H 1.09007 * 109.46560 * 299.99774 * 14 12 11 16 16 C 1.52998 * 109.47077 * 59.99775 * 14 12 11 17 17 C 1.50701 * 109.47151 * 180.02562 * 14 12 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 12 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 14 12 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 H 1.09000 * 109.46943 * 60.00131 * 1 2 3 26 26 H 1.08998 * 109.47507 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47298 * 300.00156 * 1 2 3 28 28 H 1.09001 * 109.47298 * 239.99844 * 2 1 3 29 29 H 1.09008 * 109.46771 * 120.00159 * 2 1 3 30 30 H 1.09004 * 110.92023 * 23.46361 * 8 6 4 31 31 H 1.08999 * 110.58937 * 260.14560 * 8 6 4 32 32 H 1.09000 * 111.00884 * 206.22761 * 9 8 6 33 33 H 1.08999 * 111.00705 * 82.37943 * 9 8 6 34 34 H 1.08994 * 110.36685 * 278.16931 * 10 9 8 35 35 H 1.09003 * 110.36743 * 155.84721 * 10 9 8 36 36 H 1.09004 * 109.46783 * 180.02562 * 16 14 12 37 37 H 1.09005 * 109.46870 * 300.00040 * 16 14 12 38 38 H 1.08998 * 109.47156 * 59.99979 * 16 14 12 39 39 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5747 3.4843 -0.8759 8 6 3.4952 3.6778 1.2864 9 6 4.7646 4.4908 1.6531 10 6 5.8915 3.5165 1.2282 11 7 5.3895 2.8708 0.0010 12 6 6.1506 2.3168 -0.9634 13 8 5.6271 1.8116 -1.9338 14 6 7.6522 2.3249 -0.8360 15 1 8.0065 3.3542 -0.7797 16 6 8.0604 1.5749 0.4336 17 6 8.2619 1.6493 -2.0372 18 1 7.6257 1.2532 -2.8148 19 6 9.6317 1.5312 -2.1403 20 7 10.4065 2.0131 -1.1932 21 14 10.3872 0.6868 -3.6255 22 1 10.6428 1.6912 -4.6891 23 1 11.6676 0.0457 -3.2323 24 1 9.4519 -0.3475 -4.1359 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2474 2.9714 2.0787 31 1 2.6557 4.3433 1.0852 32 1 4.8045 4.6912 2.7238 33 1 4.8135 5.4178 1.0818 34 1 6.0627 2.7723 2.0059 35 1 6.8094 4.0661 1.0192 36 1 9.1465 1.5811 0.5259 37 1 7.6194 2.0640 1.3022 38 1 7.7061 0.5456 0.3773 39 1 11.3701 1.9297 -1.2655 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597511855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:36 Heat of formation + Delta-G solvation = -144.125673 kcal Electronic energy + Delta-G solvation = -21662.176485 eV Core-core repulsion = 18376.078474 eV Total energy + Delta-G solvation = -3286.098011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01972 -40.54992 -38.36272 -37.56543 -35.85849 -33.35907 -32.66623 -31.81330 -30.50554 -27.27050 -25.89806 -24.79021 -23.42082 -22.61688 -21.96793 -20.22668 -19.00874 -18.40042 -17.82254 -17.70917 -17.25719 -17.03040 -16.20659 -15.74728 -15.26729 -15.09359 -14.60955 -14.45133 -14.33605 -14.13653 -13.68836 -13.45452 -13.31602 -13.01405 -12.95427 -12.77235 -12.72812 -12.56314 -12.51949 -12.25168 -12.06860 -11.97258 -11.81131 -11.58545 -11.40566 -11.06753 -10.64844 -10.36214 -9.73194 -8.18427 -6.28722 1.12618 1.35540 1.37653 1.38421 1.50275 1.99093 2.14360 2.43473 3.10471 3.44486 3.49073 3.79666 3.93268 4.02631 4.06104 4.21465 4.26125 4.28958 4.48600 4.68284 4.76977 4.80469 4.82694 4.89608 4.92642 4.93757 5.00079 5.09703 5.11216 5.30511 5.35828 5.41820 5.46595 5.69533 5.88149 6.15864 6.55484 6.70871 6.78569 7.35394 7.44314 8.87750 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.005545 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.624772 B = 5048.751485 C = 5913.187809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 O -0.353 6.353 4 C 0.447 3.553 5 O -0.532 6.532 6 C 0.135 3.865 7 H 0.112 0.888 8 C -0.102 4.102 9 C -0.115 4.115 10 C 0.087 3.913 11 N -0.615 5.615 12 C 0.539 3.461 13 O -0.582 6.582 14 C 0.035 3.965 15 H 0.046 0.954 16 C -0.119 4.119 17 C -0.532 4.532 18 H 0.042 0.958 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.956 3.044 22 H -0.269 1.269 23 H -0.270 1.270 24 H -0.285 1.285 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.006 0.994 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.529 5.673 10.447 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.289 3.711 5 O -0.420 6.420 6 C 0.029 3.971 7 H 0.129 0.871 8 C -0.139 4.139 9 C -0.153 4.153 10 C -0.034 4.034 11 N -0.351 5.351 12 C 0.331 3.669 13 O -0.461 6.461 14 C 0.014 3.986 15 H 0.064 0.936 16 C -0.177 4.177 17 C -0.571 4.571 18 H 0.060 0.940 19 C -0.177 4.177 20 N -0.547 5.547 21 Si 0.782 3.218 22 H -0.194 1.194 23 H -0.195 1.195 24 H -0.210 1.210 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.358 5.059 9.920 20.622 hybrid contribution 0.829 -1.227 -1.208 1.911 sum -16.529 3.832 8.712 19.073 Atomic orbital electron populations 1.21792 0.89190 1.04441 1.04134 1.23268 0.97766 0.79573 1.01670 1.86474 1.23164 1.33318 1.83963 1.24743 0.81012 0.93759 0.71630 1.90706 1.61448 1.44297 1.45506 1.21514 0.81984 0.88826 1.04789 0.87061 1.22676 1.00314 0.98995 0.91950 1.22885 0.90654 0.97242 1.04505 1.22769 0.99740 0.95895 0.85031 1.48646 1.04610 1.59138 1.22711 1.21443 0.90878 0.74387 0.80151 1.90492 1.75711 1.46309 1.33573 1.18714 0.85304 0.97944 0.96598 0.93633 1.21636 1.03410 0.97079 0.95571 1.21249 0.92049 1.38332 1.05431 0.93996 1.25574 0.97036 0.95948 0.99167 1.69929 1.04595 1.46478 1.33726 0.85591 0.77639 0.78758 0.79850 1.19450 1.19506 1.21017 0.91289 0.88327 0.90134 0.93378 0.91529 0.89601 0.85220 0.85874 0.88699 0.91204 0.89840 0.90729 0.92380 0.97439 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 10.29 71.98 0.74 -1.36 16 2 C 0.05 1.27 6.19 71.98 0.45 1.72 16 3 O -0.35 -10.19 10.19 -51.50 -0.52 -10.72 16 4 C 0.45 16.11 6.76 71.24 0.48 16.59 16 5 O -0.53 -24.76 14.81 26.97 0.40 -24.36 16 6 C 0.13 4.10 3.37 44.59 0.15 4.25 16 7 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 8 C -0.10 -1.75 6.44 31.77 0.20 -1.54 16 9 C -0.12 -1.81 7.08 31.98 0.23 -1.58 16 10 C 0.09 2.39 5.14 86.85 0.45 2.84 16 11 N -0.62 -23.42 2.84 -792.07 -2.25 -25.66 16 12 C 0.54 27.63 6.38 87.66 0.56 28.19 16 13 O -0.58 -34.59 14.73 10.38 0.15 -34.44 16 14 C 0.04 1.92 1.99 -12.29 -0.02 1.90 16 15 H 0.05 2.49 7.85 -2.38 -0.02 2.47 16 16 C -0.12 -5.97 8.78 71.98 0.63 -5.34 16 17 C -0.53 -32.91 8.38 25.60 0.21 -32.70 16 18 H 0.04 2.80 6.75 -2.91 -0.02 2.78 16 19 C 0.02 1.29 5.30 84.65 0.45 1.74 16 20 N -0.91 -52.42 11.31 21.45 0.24 -52.18 16 21 Si 0.96 46.89 29.54 68.60 2.03 48.91 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.28 -14.40 7.11 99.48 0.71 -13.70 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.07 1.65 8.13 -2.38 -0.02 1.63 16 30 H 0.09 1.40 7.85 -2.39 -0.02 1.39 16 31 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.91 7.08 -2.39 -0.02 1.89 16 35 H 0.08 2.38 7.36 -2.39 -0.02 2.36 16 36 H 0.07 3.99 6.06 -2.38 -0.01 3.98 16 37 H 0.06 2.38 5.00 -2.38 -0.01 2.37 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -82.42 318.50 5.61 -76.80 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.04 Total: 6.94 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 4.53 Total: 14.70 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -2.00 Total: -77.84 kcal Atomic # 8 Polarization: -69.55 SS G_CDS: 0.03 Total: -69.52 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -82.42 5.61 -76.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.321 kcal (2) G-P(sol) polarization free energy of solvation -82.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds