Wall clock time and date at job start Mon Mar 30 2020 04:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46967 * 2 1 4 4 C 1.50701 * 109.46922 * 119.99523 * 2 1 3 5 5 H 1.08003 * 119.99876 * 120.00308 * 4 2 1 6 6 C 1.37879 * 120.00255 * 300.00228 * 4 2 1 7 7 N 1.31515 * 119.99546 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00165 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47406 * 59.99864 * 8 6 4 10 10 H 1.48505 * 109.47342 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47312 * 299.99956 * 8 6 4 12 12 C 1.50698 * 109.47264 * 239.99826 * 2 1 3 13 13 O 1.21285 * 120.00003 * 264.35518 * 12 2 1 14 14 N 1.34774 * 119.99931 * 84.35656 * 12 2 1 15 15 C 1.47161 * 121.07443 * 355.10974 * 14 12 2 16 16 C 1.53274 * 108.57491 * 128.86985 * 15 14 12 17 17 O 1.43117 * 109.23542 * 52.92410 * 16 15 14 18 18 C 1.41954 * 114.33475 * 299.00602 * 17 16 15 19 19 C 1.54052 * 110.83466 * 183.62376 * 18 17 16 20 20 C 1.54266 * 104.00955 * 98.07420 * 19 18 17 21 21 O 1.43813 * 107.27000 * 357.58270 * 20 19 18 22 22 C 1.44510 * 107.08603 * 26.26385 * 21 20 19 23 23 C 1.47331 * 121.07033 * 175.13272 * 14 12 2 24 24 H 1.09006 * 109.47525 * 306.10144 * 1 2 3 25 25 H 1.09006 * 109.46996 * 66.09875 * 1 2 3 26 26 H 1.08992 * 109.47208 * 186.09540 * 1 2 3 27 27 H 0.97001 * 119.99475 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.62028 * 248.59600 * 15 14 12 29 29 H 1.09002 * 109.61849 * 8.95822 * 15 14 12 30 30 H 1.09007 * 109.50921 * 172.85451 * 16 15 14 31 31 H 1.09008 * 109.51298 * 292.94454 * 16 15 14 32 32 H 1.09001 * 110.52150 * 216.70130 * 19 18 17 33 33 H 1.09007 * 110.52151 * 339.30372 * 19 18 17 34 34 H 1.08996 * 109.88207 * 117.00269 * 20 19 18 35 35 H 1.09001 * 109.87996 * 238.16516 * 20 19 18 36 36 H 1.08998 * 110.63235 * 202.26472 * 22 21 20 37 37 H 1.09005 * 110.62231 * 79.24515 * 22 21 20 38 38 H 1.08998 * 109.68133 * 109.51714 * 23 14 12 39 39 H 1.09003 * 109.70909 * 348.98446 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3211 -1.1201 4.0080 9 1 3.8062 -1.1207 4.0084 10 1 1.8257 -0.4203 5.2205 11 1 1.8256 -2.5201 4.0079 12 6 2.0323 -0.7104 -1.2304 13 8 2.3319 -1.8843 -1.1731 14 7 2.1488 -0.0413 -2.3945 15 6 1.6928 1.3523 -2.5185 16 6 2.8289 2.1859 -3.1216 17 8 3.2758 1.5677 -4.3325 18 6 3.7894 0.2551 -4.1641 19 6 4.3282 -0.2977 -5.4973 20 6 5.8486 -0.0487 -5.4175 21 8 6.1049 0.6348 -4.1785 22 6 5.0440 0.2727 -3.2665 23 6 2.7362 -0.6818 -3.5842 24 1 -0.3634 0.6055 0.8304 25 1 -0.3633 0.4164 -0.9396 26 1 -0.3633 -1.0218 0.1091 27 1 0.7086 1.1614 3.4843 28 1 0.8209 1.3955 -3.1711 29 1 1.4326 1.7412 -1.5340 30 1 2.4674 3.1913 -3.3380 31 1 3.6557 2.2410 -2.4134 32 1 4.1196 -1.3643 -5.5809 33 1 3.8940 0.2427 -6.3384 34 1 6.3812 -0.9995 -5.4335 35 1 6.1671 0.5711 -6.2557 36 1 4.9425 1.0198 -2.4793 37 1 5.2246 -0.7140 -2.8398 38 1 1.9580 -0.8630 -4.3255 39 1 3.2009 -1.6264 -3.3015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597525119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:52 Heat of formation + Delta-G solvation = -116.585736 kcal Electronic energy + Delta-G solvation = -22094.610458 eV Core-core repulsion = 18809.706669 eV Total energy + Delta-G solvation = -3284.903790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76640 -38.77790 -37.25796 -34.28080 -33.89656 -32.66422 -30.57075 -29.63256 -28.34388 -25.90233 -25.23409 -23.77827 -22.63746 -21.88323 -19.97734 -18.60340 -17.15416 -16.64252 -16.50968 -15.92797 -15.56064 -15.29992 -14.94945 -14.60222 -14.50659 -14.14039 -13.86290 -13.12998 -12.93037 -12.83348 -12.65527 -11.99002 -11.68804 -11.59308 -11.50569 -11.47070 -11.26109 -11.00774 -10.77615 -10.73841 -10.49919 -10.33068 -10.09587 -9.98559 -9.55275 -9.05513 -8.66755 -8.37511 -8.12425 -6.09282 -4.12443 3.32503 3.33597 3.35626 3.43323 3.56148 3.59462 3.85770 4.41031 4.44808 4.65356 4.72436 4.92969 4.99951 5.16427 5.23933 5.27345 5.38883 5.46492 5.51840 5.56373 5.62379 5.75220 5.79114 5.83809 5.88508 6.04538 6.10605 6.58568 6.71834 6.75766 6.85826 6.92131 7.19416 7.36818 7.68984 7.87742 7.99653 8.28243 8.92587 9.08174 9.52620 10.98557 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027546 B = 0.005436 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.244758 B = 5149.805519 C = 5460.454959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.033 3.967 3 H 0.048 0.952 4 C -0.503 4.503 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.543 6.543 14 N -0.631 5.631 15 C 0.074 3.926 16 C 0.042 3.958 17 O -0.361 6.361 18 C 0.076 3.924 19 C -0.140 4.140 20 C 0.049 3.951 21 O -0.374 6.374 22 C 0.027 3.973 23 C 0.096 3.904 24 H 0.091 0.909 25 H 0.012 0.988 26 H 0.036 0.964 27 H 0.262 0.738 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 2.624 -14.668 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.012 3.988 3 H 0.066 0.934 4 C -0.542 4.542 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.318 3.682 13 O -0.419 6.419 14 N -0.368 5.368 15 C -0.049 4.049 16 C -0.035 4.035 17 O -0.280 6.280 18 C 0.035 3.965 19 C -0.178 4.178 20 C -0.028 4.028 21 O -0.292 6.292 22 C -0.050 4.050 23 C -0.028 4.028 24 H 0.110 0.890 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.896 2.305 -14.588 15.274 hybrid contribution 0.008 -0.593 0.979 1.145 sum 3.904 1.712 -13.609 14.261 Atomic orbital electron populations 1.21716 0.96063 1.01174 0.99748 1.18886 0.94357 0.96506 0.89024 0.93448 1.21015 1.31505 1.12605 0.89025 0.91305 1.24925 0.94989 0.95016 0.99068 1.69863 1.36783 1.22946 1.23779 0.86504 0.79225 0.79819 0.81600 1.20199 1.21271 1.20128 1.22115 0.75162 0.87206 0.83698 1.90531 1.49816 1.16857 1.84677 1.48505 1.63860 1.13551 1.10899 1.22416 0.96705 0.82087 1.03741 1.23129 0.96637 0.96634 0.87084 1.87791 1.81084 1.27732 1.31355 1.22664 0.93466 0.84833 0.95581 1.22852 0.95860 1.02045 0.97073 1.23178 0.94388 0.97214 0.87992 1.88902 1.47651 1.69711 1.22978 1.24089 0.85535 1.02084 0.93261 1.21877 0.95740 0.96866 0.88322 0.89030 0.96946 0.94509 0.92805 0.91257 0.87175 0.87483 0.92065 0.89062 0.88975 0.92245 0.89747 0.88218 0.90884 0.91356 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.65 37.16 0.32 -2.65 16 2 C 0.03 0.81 1.78 -92.92 -0.17 0.64 16 3 H 0.05 1.15 6.51 -51.93 -0.34 0.81 16 4 C -0.50 -14.00 8.33 -34.44 -0.29 -14.28 16 5 H 0.07 2.02 7.02 -52.48 -0.37 1.65 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.52 11.39 55.43 0.63 -23.88 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.53 11.86 6.82 -10.99 -0.07 11.79 16 13 O -0.54 -13.92 15.31 5.55 0.09 -13.84 16 14 N -0.63 -11.23 2.94 -172.67 -0.51 -11.74 16 15 C 0.07 1.09 5.96 -3.54 -0.02 1.07 16 16 C 0.04 0.55 6.77 37.30 0.25 0.80 16 17 O -0.36 -5.10 10.24 -35.23 -0.36 -5.46 16 18 C 0.08 1.03 0.95 -89.70 -0.09 0.95 16 19 C -0.14 -1.49 6.35 -25.52 -0.16 -1.65 16 20 C 0.05 0.54 7.72 37.82 0.29 0.83 16 21 O -0.37 -5.52 11.53 -35.23 -0.41 -5.93 16 22 C 0.03 0.40 6.61 37.83 0.25 0.65 16 23 C 0.10 1.45 5.17 -3.88 -0.02 1.43 16 24 H 0.09 2.26 6.26 -51.93 -0.32 1.94 16 25 H 0.01 0.23 7.44 -51.93 -0.39 -0.15 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.11 1.73 5.30 -51.93 -0.28 1.45 16 30 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.85 6.21 -51.92 -0.32 0.52 16 32 H 0.09 0.81 7.82 -51.93 -0.41 0.41 16 33 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.57 6.05 -51.93 -0.31 1.25 16 37 H 0.07 1.12 7.85 -51.93 -0.41 0.71 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 1.61 6.92 -51.93 -0.36 1.25 16 LS Contribution 305.27 15.07 4.60 4.60 Total: -1.00 -31.35 305.27 -6.36 -37.71 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.59 Total: 0.89 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 0.21 Total: 1.16 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.12 Total: -35.62 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.68 Total: -25.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.35 -6.36 -37.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597525119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.873 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds