Wall clock time and date at job start Mon Mar 30 2020 04:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46967 * 2 1 4 4 C 1.50701 * 109.46922 * 119.99523 * 2 1 3 5 5 H 1.08003 * 119.99876 * 120.00308 * 4 2 1 6 6 C 1.37879 * 120.00255 * 300.00228 * 4 2 1 7 7 N 1.31515 * 119.99546 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00165 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47406 * 59.99864 * 8 6 4 10 10 H 1.48505 * 109.47342 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47312 * 299.99956 * 8 6 4 12 12 C 1.50698 * 109.47264 * 239.99826 * 2 1 3 13 13 O 1.21285 * 120.00003 * 264.35518 * 12 2 1 14 14 N 1.34774 * 119.99931 * 84.35656 * 12 2 1 15 15 C 1.47161 * 121.07443 * 355.10974 * 14 12 2 16 16 C 1.53274 * 108.57491 * 128.86985 * 15 14 12 17 17 O 1.43117 * 109.23542 * 52.92410 * 16 15 14 18 18 C 1.41954 * 114.33475 * 299.00602 * 17 16 15 19 19 C 1.54052 * 110.83466 * 183.62376 * 18 17 16 20 20 C 1.54266 * 104.00955 * 98.07420 * 19 18 17 21 21 O 1.43813 * 107.27000 * 357.58270 * 20 19 18 22 22 C 1.44510 * 107.08603 * 26.26385 * 21 20 19 23 23 C 1.47331 * 121.07033 * 175.13272 * 14 12 2 24 24 H 1.09006 * 109.47525 * 306.10144 * 1 2 3 25 25 H 1.09006 * 109.46996 * 66.09875 * 1 2 3 26 26 H 1.08992 * 109.47208 * 186.09540 * 1 2 3 27 27 H 0.97001 * 119.99475 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.62028 * 248.59600 * 15 14 12 29 29 H 1.09002 * 109.61849 * 8.95822 * 15 14 12 30 30 H 1.09007 * 109.50921 * 172.85451 * 16 15 14 31 31 H 1.09008 * 109.51298 * 292.94454 * 16 15 14 32 32 H 1.09001 * 110.52150 * 216.70130 * 19 18 17 33 33 H 1.09007 * 110.52151 * 339.30372 * 19 18 17 34 34 H 1.08996 * 109.88207 * 117.00269 * 20 19 18 35 35 H 1.09001 * 109.87996 * 238.16516 * 20 19 18 36 36 H 1.08998 * 110.63235 * 202.26472 * 22 21 20 37 37 H 1.09005 * 110.62231 * 79.24515 * 22 21 20 38 38 H 1.08998 * 109.68133 * 109.51714 * 23 14 12 39 39 H 1.09003 * 109.70909 * 348.98446 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3211 -1.1201 4.0080 9 1 3.8062 -1.1207 4.0084 10 1 1.8257 -0.4203 5.2205 11 1 1.8256 -2.5201 4.0079 12 6 2.0323 -0.7104 -1.2304 13 8 2.3319 -1.8843 -1.1731 14 7 2.1488 -0.0413 -2.3945 15 6 1.6928 1.3523 -2.5185 16 6 2.8289 2.1859 -3.1216 17 8 3.2758 1.5677 -4.3325 18 6 3.7894 0.2551 -4.1641 19 6 4.3282 -0.2977 -5.4973 20 6 5.8486 -0.0487 -5.4175 21 8 6.1049 0.6348 -4.1785 22 6 5.0440 0.2727 -3.2665 23 6 2.7362 -0.6818 -3.5842 24 1 -0.3634 0.6055 0.8304 25 1 -0.3633 0.4164 -0.9396 26 1 -0.3633 -1.0218 0.1091 27 1 0.7086 1.1614 3.4843 28 1 0.8209 1.3955 -3.1711 29 1 1.4326 1.7412 -1.5340 30 1 2.4674 3.1913 -3.3380 31 1 3.6557 2.2410 -2.4134 32 1 4.1196 -1.3643 -5.5809 33 1 3.8940 0.2427 -6.3384 34 1 6.3812 -0.9995 -5.4335 35 1 6.1671 0.5711 -6.2557 36 1 4.9425 1.0198 -2.4793 37 1 5.2246 -0.7140 -2.8398 38 1 1.9580 -0.8630 -4.3255 39 1 3.2009 -1.6264 -3.3015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597525119.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:51 Heat of formation + Delta-G solvation = -138.592023 kcal Electronic energy + Delta-G solvation = -22095.564722 eV Core-core repulsion = 18809.706669 eV Total energy + Delta-G solvation = -3285.858054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97183 -40.29353 -38.47940 -35.90596 -35.67626 -33.83434 -32.43365 -30.69043 -29.56735 -27.32484 -27.21891 -24.92409 -24.21016 -23.05738 -21.22122 -20.09652 -18.54302 -18.21691 -18.01051 -17.33581 -16.96998 -16.59496 -16.30459 -16.09481 -15.79062 -15.50318 -14.94769 -14.80990 -14.62970 -14.29762 -13.84447 -13.52798 -13.13402 -12.99893 -12.76561 -12.72136 -12.63871 -12.60086 -12.50621 -12.28127 -12.19443 -12.06154 -11.67299 -11.16932 -11.08166 -10.63870 -10.61986 -10.28905 -9.52345 -8.18108 -6.27940 1.40131 1.41351 1.49405 1.80878 1.96557 2.42896 2.54753 2.82122 3.12093 3.37885 3.58433 3.64797 3.85747 4.03736 4.08821 4.13328 4.23914 4.31813 4.41475 4.45258 4.58221 4.61098 4.70441 4.75350 4.78298 4.86665 4.90263 4.96175 4.99906 5.03623 5.40048 5.49794 5.69813 5.71235 5.88004 6.10539 6.13664 6.46838 6.76908 7.32717 7.42429 8.87879 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027546 B = 0.005436 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.244758 B = 5149.805519 C = 5460.454959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.030 3.970 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.526 3.474 13 O -0.585 6.585 14 N -0.624 5.624 15 C 0.069 3.931 16 C 0.045 3.955 17 O -0.361 6.361 18 C 0.079 3.921 19 C -0.132 4.132 20 C 0.041 3.959 21 O -0.395 6.395 22 C 0.026 3.974 23 C 0.095 3.905 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.266 0.734 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.141 0.859 31 H 0.049 0.951 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 3.388 -16.364 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.317 3.683 13 O -0.464 6.464 14 N -0.359 5.359 15 C -0.053 4.053 16 C -0.032 4.032 17 O -0.280 6.280 18 C 0.037 3.963 19 C -0.170 4.170 20 C -0.035 4.035 21 O -0.314 6.314 22 C -0.051 4.051 23 C -0.028 4.028 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.159 0.841 31 H 0.067 0.933 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.731 3.116 -16.326 17.035 hybrid contribution 0.082 -0.786 1.447 1.649 sum 3.813 2.330 -14.879 15.536 Atomic orbital electron populations 1.21522 0.95165 0.99815 1.00821 1.18797 0.95079 0.96058 0.89120 0.93629 1.21164 1.32128 1.12488 0.91171 0.93910 1.25535 0.95089 0.95685 1.01226 1.69927 1.36798 1.23329 1.24496 0.85693 0.78720 0.78705 0.79020 1.20066 1.19777 1.20443 1.21690 0.75223 0.86642 0.84715 1.90502 1.51927 1.18438 1.85566 1.48403 1.62604 1.14607 1.10301 1.22650 0.98343 0.80355 1.03944 1.23216 0.95549 0.97759 0.86653 1.87805 1.80908 1.27723 1.31536 1.22681 0.92091 0.84542 0.96937 1.22907 0.95255 1.03279 0.95567 1.23460 0.94969 0.98139 0.86944 1.88877 1.47751 1.70432 1.24337 1.23986 0.86761 1.00837 0.93520 1.22072 0.96693 0.96602 0.87443 0.90763 0.93508 0.96324 0.92458 0.88774 0.88249 0.84100 0.93306 0.87219 0.87336 0.90819 0.87838 0.89821 0.92128 0.89112 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.65 71.98 0.62 -4.69 16 2 C 0.03 1.51 1.78 -12.29 -0.02 1.49 16 3 H 0.05 2.25 6.51 -2.39 -0.02 2.24 16 4 C -0.53 -30.40 8.33 25.60 0.21 -30.19 16 5 H 0.04 2.62 7.02 -2.91 -0.02 2.60 16 6 C 0.02 1.35 5.30 84.66 0.45 1.80 16 7 N -0.91 -49.79 11.39 21.45 0.24 -49.55 16 8 Si 0.95 44.42 29.54 68.60 2.03 46.44 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 C 0.53 24.06 6.82 87.66 0.60 24.66 16 13 O -0.58 -30.91 15.31 -3.05 -0.05 -30.95 16 14 N -0.62 -21.74 2.94 -818.59 -2.40 -24.14 16 15 C 0.07 1.92 5.96 86.35 0.51 2.43 16 16 C 0.04 1.08 6.77 72.07 0.49 1.57 16 17 O -0.36 -9.22 10.24 -148.96 -1.53 -10.75 16 18 C 0.08 2.00 0.95 -10.20 -0.01 1.99 16 19 C -0.13 -2.41 6.35 31.38 0.20 -2.21 16 20 C 0.04 0.80 7.72 72.41 0.56 1.36 16 21 O -0.39 -11.26 11.53 -148.98 -1.72 -12.98 16 22 C 0.03 0.77 6.61 72.42 0.48 1.25 16 23 C 0.09 2.75 5.17 86.03 0.45 3.19 16 24 H 0.07 3.68 6.26 -2.38 -0.01 3.66 16 25 H 0.05 1.77 7.44 -2.38 -0.02 1.76 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.10 3.00 5.30 -2.39 -0.01 2.99 16 30 H 0.14 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.05 1.31 6.21 -2.38 -0.01 1.30 16 32 H 0.11 1.60 7.82 -2.39 -0.02 1.58 16 33 H 0.11 1.66 8.07 -2.38 -0.02 1.65 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.70 6.05 -2.39 -0.01 2.68 16 37 H 0.06 1.91 7.85 -2.38 -0.02 1.89 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 2.73 6.92 -2.39 -0.02 2.72 16 Total: -1.00 -68.42 305.27 2.16 -66.25 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.05 Total: 13.01 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 4.54 Total: 2.66 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -2.16 Total: -73.69 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -3.29 Total: -54.67 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -68.42 2.16 -66.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597525119.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.338 kcal (2) G-P(sol) polarization free energy of solvation -68.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds