Wall clock time and date at job start Mon Mar 30 2020 04:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46802 * 2 1 4 4 C 1.50701 * 109.47101 * 119.99777 * 2 1 3 5 5 H 1.07998 * 119.99502 * 120.00599 * 4 2 1 6 6 C 1.37879 * 119.99919 * 300.00453 * 4 2 1 7 7 N 1.31510 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99606 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47205 * 119.99930 * 8 6 4 11 11 H 1.48498 * 109.46591 * 239.99842 * 8 6 4 12 12 C 1.50700 * 109.47104 * 240.00136 * 2 1 3 13 13 O 1.21279 * 119.99620 * 256.72916 * 12 2 1 14 14 N 1.34780 * 120.00161 * 77.01271 * 12 2 1 15 15 C 1.47336 * 121.01929 * 355.59256 * 14 12 2 16 16 C 1.53315 * 108.24707 * 130.63655 * 15 14 12 17 17 O 1.42963 * 109.39175 * 52.90992 * 16 15 14 18 18 C 1.43129 * 114.10669 * 296.94038 * 17 16 15 19 19 C 1.46311 * 121.02222 * 175.31477 * 14 12 2 20 20 C 1.53842 * 110.37761 * 106.31248 * 19 14 12 21 21 C 1.54644 * 103.80894 * 240.90172 * 20 19 14 22 22 O 1.44473 * 104.83314 * 23.87590 * 21 20 19 23 23 C 1.44589 * 105.40869 * 319.93063 * 22 21 20 24 24 H 1.08999 * 109.47266 * 53.77913 * 1 2 3 25 25 H 1.09005 * 109.46833 * 173.77569 * 1 2 3 26 26 H 1.08996 * 109.47379 * 293.77455 * 1 2 3 27 27 H 0.97005 * 119.99816 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.71085 * 250.32545 * 15 14 12 29 29 H 1.09005 * 109.70807 * 10.94433 * 15 14 12 30 30 H 1.09006 * 109.48494 * 172.88824 * 16 15 14 31 31 H 1.09000 * 109.48465 * 292.92928 * 16 15 14 32 32 H 1.08997 * 109.50867 * 181.12441 * 18 17 16 33 33 H 1.09005 * 109.50455 * 301.25490 * 18 17 16 34 34 H 1.08996 * 110.56086 * 359.48126 * 20 19 14 35 35 H 1.09005 * 110.55908 * 122.17602 * 20 19 14 36 36 H 1.09000 * 110.36803 * 142.72140 * 21 20 19 37 37 H 1.09004 * 110.36683 * 264.92891 * 21 20 19 38 38 H 1.09004 * 110.39947 * 281.04113 * 23 22 21 39 39 H 1.09008 * 110.40183 * 158.63022 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1474 -2.2862 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8164 12 6 2.0323 -0.7104 -1.2305 13 8 2.4618 -1.8414 -1.1448 14 7 2.0097 -0.0868 -2.4251 15 6 1.4110 1.2514 -2.5718 16 6 2.4076 2.1437 -3.3209 17 8 2.8014 1.5001 -4.5352 18 6 3.4939 0.2623 -4.3428 19 6 2.5842 -0.7154 -3.6149 20 6 1.4683 -1.2064 -4.5531 21 6 1.6997 -2.7333 -4.6346 22 8 2.4153 -3.0640 -3.4239 23 6 3.3595 -1.9864 -3.2291 24 1 -0.3634 0.6072 -0.8290 25 1 -0.3633 -1.0217 -0.1114 26 1 -0.3634 0.4143 0.9404 27 1 0.7093 1.1618 3.4844 28 1 0.4835 1.1790 -3.1398 29 1 1.2077 1.6731 -1.5874 30 1 1.9374 3.0996 -3.5520 31 1 3.2855 2.3116 -2.6971 32 1 3.7751 -0.1518 -5.3110 33 1 4.3896 0.4353 -3.7461 34 1 0.4881 -0.9901 -4.1282 35 1 1.5670 -0.7490 -5.5376 36 1 0.7462 -3.2603 -4.6678 37 1 2.2993 -2.9798 -5.5109 38 1 4.2240 -2.1165 -3.8802 39 1 3.6722 -1.9390 -2.1859 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597622127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:00 Heat of formation + Delta-G solvation = -89.806562 kcal Electronic energy + Delta-G solvation = -22651.104110 eV Core-core repulsion = 19367.361553 eV Total energy + Delta-G solvation = -3283.742557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91365 -37.96446 -37.84270 -34.33735 -33.87959 -32.30265 -30.34050 -29.64500 -27.90825 -25.64394 -25.22607 -23.34910 -22.61562 -22.35047 -20.14540 -18.32616 -16.85209 -16.50113 -16.09800 -16.00561 -15.78032 -15.19770 -14.92266 -14.64704 -14.25643 -14.08557 -13.82354 -13.11100 -12.86255 -12.78478 -12.32273 -12.10298 -11.60778 -11.43436 -11.31796 -11.20574 -11.01379 -10.90535 -10.71136 -10.57111 -10.42300 -10.33738 -9.98603 -9.93274 -9.37074 -9.01729 -8.47386 -8.14787 -7.84597 -6.07118 -4.10631 3.30016 3.31528 3.38454 3.47306 3.55489 3.77499 4.26750 4.43651 4.66081 4.82750 5.00820 5.08937 5.16148 5.22671 5.25625 5.34855 5.37235 5.49954 5.63866 5.72049 5.77294 5.81287 5.86022 5.98293 6.06233 6.14279 6.47157 6.58763 6.80562 6.93537 7.04225 7.05236 7.24973 7.38096 7.72389 7.91653 8.05282 8.31422 8.97187 9.15616 9.54949 11.00064 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.006686 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.109891 B = 4187.150297 C = 4784.848853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.522 3.478 13 O -0.514 6.514 14 N -0.616 5.616 15 C 0.076 3.924 16 C 0.045 3.955 17 O -0.380 6.380 18 C 0.067 3.933 19 C 0.106 3.894 20 C -0.156 4.156 21 C 0.040 3.960 22 O -0.348 6.348 23 C 0.025 3.975 24 H 0.014 0.986 25 H 0.030 0.970 26 H 0.096 0.904 27 H 0.261 0.739 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 2.446 -14.187 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.065 0.935 4 C -0.537 4.537 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.315 3.685 13 O -0.390 6.390 14 N -0.352 5.352 15 C -0.048 4.048 16 C -0.033 4.033 17 O -0.298 6.298 18 C -0.011 4.011 19 C 0.019 3.981 20 C -0.195 4.195 21 C -0.038 4.038 22 O -0.266 6.266 23 C -0.051 4.051 24 H 0.033 0.967 25 H 0.049 0.951 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.808 1.814 -14.005 14.238 hybrid contribution 0.154 -0.152 0.738 0.769 sum 1.962 1.661 -13.267 13.514 Atomic orbital electron populations 1.21769 0.96262 0.99091 1.02060 1.18894 0.94318 0.96488 0.89148 0.93522 1.21158 1.30992 1.12626 0.88940 0.90869 1.24936 0.95091 0.95051 0.99116 1.69866 1.37092 1.23083 1.23503 0.86404 0.78681 0.79776 0.82462 1.19522 1.21077 1.20999 1.22080 0.76182 0.86557 0.83673 1.90378 1.44813 1.18746 1.85056 1.48167 1.60679 1.18384 1.07984 1.22464 0.96067 0.83243 1.03002 1.23045 0.98058 0.95753 0.86398 1.87945 1.76351 1.35439 1.30110 1.22714 0.93569 0.84246 1.00594 1.21931 0.94267 0.94895 0.86993 1.23279 1.00027 0.96355 0.99845 1.23394 0.97136 0.94329 0.88923 1.89288 1.52211 1.43762 1.41354 1.24501 0.90629 0.82979 1.06983 0.96697 0.95096 0.88540 0.92965 0.91381 0.87227 0.87818 0.92371 0.88042 0.92423 0.90308 0.90170 0.89723 0.92978 0.94198 0.82486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.78 37.16 0.33 -2.76 16 2 C 0.03 0.79 1.78 -92.92 -0.17 0.62 16 3 H 0.05 1.14 6.89 -51.93 -0.36 0.79 16 4 C -0.50 -13.85 8.35 -34.44 -0.29 -14.13 16 5 H 0.07 2.15 6.88 -52.49 -0.36 1.79 16 6 C 0.06 1.60 5.29 -17.82 -0.09 1.51 16 7 N -0.90 -24.64 11.29 55.43 0.63 -24.02 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 C 0.52 11.68 6.70 -10.98 -0.07 11.61 16 13 O -0.51 -12.85 10.96 -14.81 -0.16 -13.01 16 14 N -0.62 -11.00 2.62 -157.67 -0.41 -11.41 16 15 C 0.08 1.12 5.47 -3.42 -0.02 1.10 16 16 C 0.04 0.56 6.96 37.32 0.26 0.82 16 17 O -0.38 -5.10 10.69 -35.23 -0.38 -5.47 16 18 C 0.07 0.86 5.32 36.70 0.20 1.06 16 19 C 0.11 1.65 0.98 -131.53 -0.13 1.53 16 20 C -0.16 -2.19 6.25 -25.43 -0.16 -2.35 16 21 C 0.04 0.57 7.65 38.02 0.29 0.86 16 22 O -0.35 -6.66 10.89 -55.60 -0.61 -7.26 16 23 C 0.02 0.44 5.80 37.57 0.22 0.65 16 24 H 0.01 0.28 6.56 -51.93 -0.34 -0.06 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.10 2.44 5.93 -51.93 -0.31 2.14 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.11 1.73 5.03 -51.93 -0.26 1.47 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.20 7.86 -51.93 -0.41 0.79 16 35 H 0.08 0.95 7.67 -51.93 -0.40 0.55 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.58 7.85 -51.93 -0.41 0.17 16 39 H 0.16 3.29 4.72 -56.57 -0.27 3.02 16 LS Contribution 299.32 15.07 4.51 4.51 Total: -1.00 -30.94 299.32 -6.70 -37.63 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.62 Total: 1.97 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 0.36 Total: 0.51 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.21 Total: -35.43 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.14 Total: -25.75 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.94 -6.70 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597622127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.172 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds