Wall clock time and date at job start Mon Mar 30 2020 04:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46802 * 2 1 4 4 C 1.50701 * 109.47101 * 119.99777 * 2 1 3 5 5 H 1.07998 * 119.99502 * 120.00599 * 4 2 1 6 6 C 1.37879 * 119.99919 * 300.00453 * 4 2 1 7 7 N 1.31510 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99606 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47205 * 119.99930 * 8 6 4 11 11 H 1.48498 * 109.46591 * 239.99842 * 8 6 4 12 12 C 1.50700 * 109.47104 * 240.00136 * 2 1 3 13 13 O 1.21279 * 119.99620 * 256.72916 * 12 2 1 14 14 N 1.34780 * 120.00161 * 77.01271 * 12 2 1 15 15 C 1.47336 * 121.01929 * 355.59256 * 14 12 2 16 16 C 1.53315 * 108.24707 * 130.63655 * 15 14 12 17 17 O 1.42963 * 109.39175 * 52.90992 * 16 15 14 18 18 C 1.43129 * 114.10669 * 296.94038 * 17 16 15 19 19 C 1.46311 * 121.02222 * 175.31477 * 14 12 2 20 20 C 1.53842 * 110.37761 * 106.31248 * 19 14 12 21 21 C 1.54644 * 103.80894 * 240.90172 * 20 19 14 22 22 O 1.44473 * 104.83314 * 23.87590 * 21 20 19 23 23 C 1.44589 * 105.40869 * 319.93063 * 22 21 20 24 24 H 1.08999 * 109.47266 * 53.77913 * 1 2 3 25 25 H 1.09005 * 109.46833 * 173.77569 * 1 2 3 26 26 H 1.08996 * 109.47379 * 293.77455 * 1 2 3 27 27 H 0.97005 * 119.99816 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.71085 * 250.32545 * 15 14 12 29 29 H 1.09005 * 109.70807 * 10.94433 * 15 14 12 30 30 H 1.09006 * 109.48494 * 172.88824 * 16 15 14 31 31 H 1.09000 * 109.48465 * 292.92928 * 16 15 14 32 32 H 1.08997 * 109.50867 * 181.12441 * 18 17 16 33 33 H 1.09005 * 109.50455 * 301.25490 * 18 17 16 34 34 H 1.08996 * 110.56086 * 359.48126 * 20 19 14 35 35 H 1.09005 * 110.55908 * 122.17602 * 20 19 14 36 36 H 1.09000 * 110.36803 * 142.72140 * 21 20 19 37 37 H 1.09004 * 110.36683 * 264.92891 * 21 20 19 38 38 H 1.09004 * 110.39947 * 281.04113 * 23 22 21 39 39 H 1.09008 * 110.40183 * 158.63022 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1474 -2.2862 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8164 12 6 2.0323 -0.7104 -1.2305 13 8 2.4618 -1.8414 -1.1448 14 7 2.0097 -0.0868 -2.4251 15 6 1.4110 1.2514 -2.5718 16 6 2.4076 2.1437 -3.3209 17 8 2.8014 1.5001 -4.5352 18 6 3.4939 0.2623 -4.3428 19 6 2.5842 -0.7154 -3.6149 20 6 1.4683 -1.2064 -4.5531 21 6 1.6997 -2.7333 -4.6346 22 8 2.4153 -3.0640 -3.4239 23 6 3.3595 -1.9864 -3.2291 24 1 -0.3634 0.6072 -0.8290 25 1 -0.3633 -1.0217 -0.1114 26 1 -0.3634 0.4143 0.9404 27 1 0.7093 1.1618 3.4844 28 1 0.4835 1.1790 -3.1398 29 1 1.2077 1.6731 -1.5874 30 1 1.9374 3.0996 -3.5520 31 1 3.2855 2.3116 -2.6971 32 1 3.7751 -0.1518 -5.3110 33 1 4.3896 0.4353 -3.7461 34 1 0.4881 -0.9901 -4.1282 35 1 1.5670 -0.7490 -5.5376 36 1 0.7462 -3.2603 -4.6678 37 1 2.2993 -2.9798 -5.5109 38 1 4.2240 -2.1165 -3.8802 39 1 3.6722 -1.9390 -2.1859 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597622127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:00 Heat of formation + Delta-G solvation = -111.092154 kcal Electronic energy + Delta-G solvation = -22652.027123 eV Core-core repulsion = 19367.361553 eV Total energy + Delta-G solvation = -3284.665570 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.25329 -39.48951 -39.03237 -35.96408 -35.59552 -33.65966 -32.18524 -30.81969 -29.19429 -27.28631 -26.79584 -24.93328 -23.82981 -23.67913 -21.63212 -19.76355 -18.41189 -18.18637 -17.48346 -17.29215 -16.95341 -16.77076 -16.38399 -16.04227 -15.57960 -15.49857 -15.27002 -14.74169 -14.44339 -14.16783 -13.94062 -13.28219 -13.14611 -12.96008 -12.87130 -12.72969 -12.50626 -12.41904 -12.29389 -12.18722 -11.98131 -11.93777 -11.68590 -11.14287 -11.06468 -10.63445 -10.53862 -9.59923 -9.43606 -8.16943 -6.27033 1.37470 1.40270 1.52915 1.85263 1.95994 2.43501 2.75465 3.08626 3.12778 3.49400 3.68778 3.83334 3.94918 4.06560 4.15478 4.23298 4.27910 4.30002 4.49822 4.55982 4.57421 4.69471 4.78410 4.81284 4.83639 4.87931 4.91340 4.97643 5.00103 5.16786 5.41229 5.68659 5.73021 5.91351 6.02277 6.02851 6.17911 6.53066 6.80314 7.38746 7.50527 8.88676 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.006686 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.109891 B = 4187.150297 C = 4784.848853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.031 3.969 3 H 0.042 0.958 4 C -0.525 4.525 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.550 6.550 14 N -0.611 5.611 15 C 0.069 3.931 16 C 0.050 3.950 17 O -0.378 6.378 18 C 0.071 3.929 19 C 0.100 3.900 20 C -0.147 4.147 21 C 0.034 3.966 22 O -0.390 6.390 23 C 0.025 3.975 24 H 0.048 0.952 25 H 0.013 0.987 26 H 0.074 0.926 27 H 0.265 0.735 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.053 0.947 32 H 0.135 0.865 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 3.545 -16.284 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.010 3.990 3 H 0.060 0.940 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.429 6.429 14 N -0.346 5.346 15 C -0.053 4.053 16 C -0.027 4.027 17 O -0.296 6.296 18 C -0.007 4.007 19 C 0.014 3.986 20 C -0.186 4.186 21 C -0.042 4.042 22 O -0.309 6.309 23 C -0.051 4.051 24 H 0.067 0.933 25 H 0.033 0.967 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.155 0.845 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.860 2.958 -16.138 16.512 hybrid contribution 0.130 -0.498 1.351 1.446 sum 1.990 2.459 -14.787 15.122 Atomic orbital electron populations 1.21571 0.95548 0.98416 1.02219 1.18776 0.94855 0.95895 0.89455 0.94028 1.21283 1.31540 1.12435 0.91102 0.93609 1.25544 0.95210 0.95728 1.01269 1.69931 1.37144 1.23491 1.24270 0.85583 0.78339 0.78625 0.79583 1.20592 1.19722 1.20185 1.21624 0.76401 0.86176 0.84757 1.90418 1.46342 1.20147 1.86008 1.48066 1.59809 1.19229 1.07446 1.22692 0.97528 0.82020 1.03081 1.23109 0.97361 0.96288 0.85954 1.87958 1.76232 1.35314 1.30133 1.22807 0.92530 0.83515 1.01826 1.22195 0.95226 0.94909 0.86290 1.23243 0.98381 0.96217 1.00733 1.23654 0.97581 0.94634 0.88353 1.89237 1.53143 1.44730 1.43797 1.24290 0.91729 0.83838 1.05288 0.93293 0.96740 0.90717 0.92549 0.89735 0.88523 0.84517 0.92890 0.84697 0.92644 0.91795 0.86936 0.89332 0.89775 0.91060 0.86611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.78 71.98 0.63 -4.98 16 2 C 0.03 1.56 1.78 -12.29 -0.02 1.54 16 3 H 0.04 2.10 6.89 -2.39 -0.02 2.08 16 4 C -0.53 -30.31 8.35 25.60 0.21 -30.09 16 5 H 0.05 2.84 6.88 -2.91 -0.02 2.82 16 6 C 0.02 1.21 5.29 84.66 0.45 1.66 16 7 N -0.91 -50.43 11.29 21.45 0.24 -50.19 16 8 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 9 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 C 0.52 23.89 6.70 87.66 0.59 24.47 16 13 O -0.55 -28.90 10.96 16.45 0.18 -28.72 16 14 N -0.61 -21.46 2.62 -771.14 -2.02 -23.49 16 15 C 0.07 1.93 5.47 86.33 0.47 2.40 16 16 C 0.05 1.11 6.96 72.09 0.50 1.61 16 17 O -0.38 -8.64 10.69 -148.98 -1.59 -10.23 16 18 C 0.07 1.59 5.32 71.68 0.38 1.97 16 19 C 0.10 2.93 0.98 3.89 0.00 2.93 16 20 C -0.15 -3.71 6.25 31.44 0.20 -3.51 16 21 C 0.03 0.91 7.65 72.54 0.55 1.47 16 22 O -0.39 -14.86 10.89 -129.51 -1.41 -16.27 16 23 C 0.02 0.85 5.80 72.25 0.42 1.26 16 24 H 0.05 1.90 6.56 -2.39 -0.02 1.88 16 25 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.07 3.84 5.93 -2.39 -0.01 3.83 16 27 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 28 H 0.08 2.11 8.08 -2.39 -0.02 2.09 16 29 H 0.10 2.96 5.03 -2.38 -0.01 2.95 16 30 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.14 2.18 8.05 -2.39 -0.02 2.16 16 33 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.06 1.81 7.86 -2.39 -0.02 1.79 16 35 H 0.11 2.12 7.67 -2.38 -0.02 2.10 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.07 1.95 7.85 -2.39 -0.02 1.93 16 39 H 0.12 5.07 4.72 -75.95 -0.36 4.71 16 Total: -1.00 -69.42 299.32 2.51 -66.90 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.70 Total: 14.29 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.39 Total: 0.73 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.78 Total: -73.68 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -2.82 Total: -55.22 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.42 2.51 -66.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597622127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.190 kcal (2) G-P(sol) polarization free energy of solvation -69.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds