Wall clock time and date at job start Mon Mar 30 2020 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47835 * 2 1 4 4 C 1.50702 * 109.47109 * 120.00279 * 2 1 3 5 5 H 1.07993 * 120.00504 * 119.99300 * 4 2 1 6 6 C 1.37885 * 119.99686 * 299.99790 * 4 2 1 7 7 N 1.31506 * 120.00338 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99746 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47376 * 90.00123 * 8 6 4 10 10 H 1.48503 * 109.47352 * 330.00121 * 8 6 4 11 11 H 1.48500 * 109.46939 * 210.00025 * 8 6 4 12 12 C 1.50703 * 109.47001 * 239.99313 * 2 1 3 13 13 O 1.21280 * 120.00566 * 243.22291 * 12 2 1 14 14 N 1.34778 * 119.99763 * 63.23014 * 12 2 1 15 15 C 1.47345 * 121.01857 * 20.61991 * 14 12 2 16 16 C 1.52863 * 108.48688 * 229.30253 * 15 14 12 17 17 O 1.42959 * 109.49192 * 307.37992 * 16 15 14 18 18 C 1.43117 * 114.11200 * 62.87801 * 17 16 15 19 19 C 1.46345 * 121.02009 * 200.90040 * 14 12 2 20 20 C 1.54160 * 110.16311 * 253.23206 * 19 14 12 21 21 C 1.55133 * 101.92823 * 98.51042 * 20 19 14 22 22 O 1.44449 * 103.57759 * 36.49118 * 21 20 19 23 23 C 1.43936 * 106.99831 * 320.35052 * 22 21 20 24 24 H 1.09001 * 109.46787 * 305.96453 * 1 2 3 25 25 H 1.09005 * 109.46923 * 65.96065 * 1 2 3 26 26 H 1.08996 * 109.47458 * 185.96192 * 1 2 3 27 27 H 0.96997 * 120.00590 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.70846 * 349.05461 * 15 14 12 29 29 H 1.08998 * 109.71343 * 109.67841 * 15 14 12 30 30 H 1.08997 * 109.55868 * 187.30137 * 16 15 14 31 31 H 1.09001 * 109.33098 * 67.31881 * 16 15 14 32 32 H 1.09000 * 109.50682 * 178.86142 * 18 17 16 33 33 H 1.09006 * 109.53705 * 58.75706 * 18 17 16 34 34 H 1.08992 * 110.94407 * 216.67082 * 20 19 14 35 35 H 1.09005 * 110.93660 * 340.35522 * 20 19 14 36 36 H 1.09000 * 110.60354 * 277.96899 * 21 20 19 37 37 H 1.08999 * 110.60339 * 155.01133 * 21 20 19 38 38 H 1.08998 * 109.92290 * 266.98344 * 23 22 21 39 39 H 1.09003 * 110.07989 * 145.78098 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1370 -0.8595 3.5566 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8747 2.6992 10 1 0.8492 2.1773 1.4922 11 1 0.9772 1.9954 3.9070 12 6 2.0323 -0.7106 -1.2304 13 8 2.6805 -1.7296 -1.1201 14 7 1.7612 -0.2135 -2.4535 15 6 1.3907 1.2013 -2.6331 16 6 0.1301 1.2666 -3.4951 17 8 0.3335 0.5169 -4.6953 18 6 0.5588 -0.8801 -4.4809 19 6 1.8199 -1.0638 -3.6431 20 6 3.0704 -0.7238 -4.4781 21 6 4.0630 -1.8301 -4.0339 22 8 3.2210 -2.9904 -3.8576 23 6 1.9996 -2.5352 -3.2473 24 1 -0.3633 0.6036 0.8318 25 1 -0.3633 0.4187 -0.9386 26 1 -0.3634 -1.0220 0.1067 27 1 1.9030 -0.5280 4.4376 28 1 1.1946 1.6560 -1.6621 29 1 2.2011 1.7331 -3.1316 30 1 -0.0862 2.3047 -3.7473 31 1 -0.7083 0.8448 -2.9408 32 1 0.6838 -1.3802 -5.4413 33 1 -0.2935 -1.3102 -3.9548 34 1 2.8582 -0.7964 -5.5447 35 1 3.4509 0.2657 -4.2246 36 1 4.5440 -1.5589 -3.0940 37 1 4.8079 -2.0109 -4.8089 38 1 2.0713 -2.6220 -2.1631 39 1 1.1572 -3.1233 -3.6117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597622128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:02 Heat of formation + Delta-G solvation = -76.596599 kcal Electronic energy + Delta-G solvation = -22775.418814 eV Core-core repulsion = 19492.249084 eV Total energy + Delta-G solvation = -3283.169731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14559 -38.23311 -37.94509 -34.62890 -34.02155 -32.35572 -31.06534 -29.77857 -28.22206 -25.82793 -25.24416 -23.41591 -22.95505 -22.37982 -20.34283 -18.33545 -17.06972 -16.94074 -16.27878 -16.14389 -15.98645 -15.28055 -15.23023 -14.88950 -14.56465 -14.20266 -13.84913 -13.41702 -13.16720 -12.80241 -12.44239 -12.36250 -12.13700 -11.73511 -11.58901 -11.39872 -11.33936 -11.08178 -10.96518 -10.72423 -10.57645 -10.38606 -10.06867 -9.77814 -9.53008 -9.18581 -8.66932 -8.43082 -7.85385 -6.12632 -4.13842 3.09051 3.10400 3.17462 3.21681 3.30060 3.67187 4.24098 4.29965 4.50284 4.63689 4.87926 4.90335 5.06395 5.15993 5.21885 5.25503 5.35767 5.43944 5.48266 5.52620 5.64320 5.76474 5.85245 5.91509 5.99716 6.02659 6.08485 6.19313 6.28912 6.39661 6.58633 6.94204 6.96532 7.07045 7.21354 7.43189 7.78291 8.43107 8.81052 9.05729 9.45321 11.00135 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.007418 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.899537 B = 3773.750042 C = 4569.119631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.004 4.004 3 H 0.051 0.949 4 C -0.509 4.509 5 H 0.094 0.906 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.268 1.268 11 H -0.294 1.294 12 C 0.535 3.465 13 O -0.494 6.494 14 N -0.623 5.623 15 C 0.076 3.924 16 C 0.044 3.956 17 O -0.378 6.378 18 C 0.068 3.932 19 C 0.110 3.890 20 C -0.154 4.154 21 C 0.053 3.947 22 O -0.374 6.374 23 C -0.016 4.016 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.265 0.735 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.159 0.841 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 5.241 -15.914 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 H 0.068 0.932 4 C -0.547 4.547 5 H 0.112 0.888 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.222 1.222 12 C 0.328 3.672 13 O -0.370 6.370 14 N -0.360 5.360 15 C -0.047 4.047 16 C -0.034 4.034 17 O -0.296 6.296 18 C -0.010 4.010 19 C 0.024 3.976 20 C -0.193 4.193 21 C -0.024 4.024 22 O -0.292 6.292 23 C -0.091 4.091 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.174 0.826 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.533 4.540 -15.851 16.863 hybrid contribution -0.767 1.121 0.401 1.417 sum -4.300 5.661 -15.449 17.007 Atomic orbital electron populations 1.22188 0.97096 1.02023 0.99119 1.19342 0.93236 0.97556 0.92395 0.93174 1.20913 1.32420 1.14248 0.87127 0.88759 1.24965 0.95724 0.96500 0.95758 1.69868 1.45185 1.40041 0.97921 0.86939 0.80825 0.83831 0.77099 1.20479 1.19388 1.22175 1.21394 0.77431 0.84983 0.83415 1.90130 1.36511 1.25305 1.85078 1.47997 1.72239 1.09682 1.06122 1.22334 0.97478 0.82757 1.02101 1.22967 0.96679 0.97194 0.86540 1.87965 1.92256 1.19313 1.30087 1.22854 0.95153 0.82798 1.00161 1.21958 0.96102 0.93005 0.86504 1.23369 0.95662 1.00398 0.99880 1.23468 0.93444 0.84932 1.00536 1.88808 1.27824 1.30314 1.82294 1.25118 0.87050 0.89814 1.07158 0.93248 0.94634 0.92138 0.92457 0.87914 0.90986 0.87778 0.92266 0.87728 0.92403 0.90148 0.90055 0.91750 0.89720 0.82572 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.29 37.16 0.31 -2.55 16 2 C 0.00 -0.08 1.39 -92.92 -0.13 -0.21 16 3 H 0.05 1.07 6.12 -51.93 -0.32 0.75 16 4 C -0.51 -14.09 8.95 -34.44 -0.31 -14.40 16 5 H 0.09 2.98 7.00 -52.49 -0.37 2.61 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 7 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 8 Si 0.88 20.53 24.31 -169.99 -4.13 16.40 16 9 H -0.28 -6.28 6.92 56.52 0.39 -5.89 16 10 H -0.27 -5.70 6.53 56.52 0.37 -5.34 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.53 11.01 6.46 -10.98 -0.07 10.94 16 13 O -0.49 -11.73 11.93 5.56 0.07 -11.66 16 14 N -0.62 -10.09 2.62 -157.71 -0.41 -10.51 16 15 C 0.08 0.99 5.41 -3.65 -0.02 0.97 16 16 C 0.04 0.49 6.86 37.09 0.25 0.74 16 17 O -0.38 -4.72 10.68 -35.23 -0.38 -5.10 16 18 C 0.07 0.84 5.40 36.91 0.20 1.04 16 19 C 0.11 1.63 0.91 -131.32 -0.12 1.51 16 20 C -0.15 -2.08 6.23 -25.00 -0.16 -2.23 16 21 C 0.05 0.80 7.73 38.29 0.30 1.10 16 22 O -0.37 -6.66 11.53 -35.23 -0.41 -7.07 16 23 C -0.02 -0.28 6.42 37.38 0.24 -0.04 16 24 H 0.05 0.99 3.45 -51.93 -0.18 0.82 16 25 H 0.03 0.55 5.43 -51.93 -0.28 0.27 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.10 1.35 5.36 -51.93 -0.28 1.07 16 29 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.67 7.05 -51.93 -0.37 0.30 16 32 H 0.10 1.13 7.93 -51.93 -0.41 0.71 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 35 H 0.08 1.07 7.27 -51.93 -0.38 0.70 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.16 3.28 3.62 -58.43 -0.21 3.07 16 39 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -31.74 290.30 -4.99 -36.73 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.28 Total: 4.16 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 0.40 Total: -1.19 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.36 Total: -36.64 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.72 Total: -23.83 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.13 Total: 16.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.74 -4.99 -36.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597622128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.867 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds