Wall clock time and date at job start Mon Mar 30 2020 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47835 * 2 1 4 4 C 1.50702 * 109.47109 * 120.00279 * 2 1 3 5 5 H 1.07993 * 120.00504 * 119.99300 * 4 2 1 6 6 C 1.37885 * 119.99686 * 299.99790 * 4 2 1 7 7 N 1.31506 * 120.00338 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99746 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47376 * 90.00123 * 8 6 4 10 10 H 1.48503 * 109.47352 * 330.00121 * 8 6 4 11 11 H 1.48500 * 109.46939 * 210.00025 * 8 6 4 12 12 C 1.50703 * 109.47001 * 239.99313 * 2 1 3 13 13 O 1.21280 * 120.00566 * 243.22291 * 12 2 1 14 14 N 1.34778 * 119.99763 * 63.23014 * 12 2 1 15 15 C 1.47345 * 121.01857 * 20.61991 * 14 12 2 16 16 C 1.52863 * 108.48688 * 229.30253 * 15 14 12 17 17 O 1.42959 * 109.49192 * 307.37992 * 16 15 14 18 18 C 1.43117 * 114.11200 * 62.87801 * 17 16 15 19 19 C 1.46345 * 121.02009 * 200.90040 * 14 12 2 20 20 C 1.54160 * 110.16311 * 253.23206 * 19 14 12 21 21 C 1.55133 * 101.92823 * 98.51042 * 20 19 14 22 22 O 1.44449 * 103.57759 * 36.49118 * 21 20 19 23 23 C 1.43936 * 106.99831 * 320.35052 * 22 21 20 24 24 H 1.09001 * 109.46787 * 305.96453 * 1 2 3 25 25 H 1.09005 * 109.46923 * 65.96065 * 1 2 3 26 26 H 1.08996 * 109.47458 * 185.96192 * 1 2 3 27 27 H 0.96997 * 120.00590 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.70846 * 349.05461 * 15 14 12 29 29 H 1.08998 * 109.71343 * 109.67841 * 15 14 12 30 30 H 1.08997 * 109.55868 * 187.30137 * 16 15 14 31 31 H 1.09001 * 109.33098 * 67.31881 * 16 15 14 32 32 H 1.09000 * 109.50682 * 178.86142 * 18 17 16 33 33 H 1.09006 * 109.53705 * 58.75706 * 18 17 16 34 34 H 1.08992 * 110.94407 * 216.67082 * 20 19 14 35 35 H 1.09005 * 110.93660 * 340.35522 * 20 19 14 36 36 H 1.09000 * 110.60354 * 277.96899 * 21 20 19 37 37 H 1.08999 * 110.60339 * 155.01133 * 21 20 19 38 38 H 1.08998 * 109.92290 * 266.98344 * 23 22 21 39 39 H 1.09003 * 110.07989 * 145.78098 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1370 -0.8595 3.5566 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8747 2.6992 10 1 0.8492 2.1773 1.4922 11 1 0.9772 1.9954 3.9070 12 6 2.0323 -0.7106 -1.2304 13 8 2.6805 -1.7296 -1.1201 14 7 1.7612 -0.2135 -2.4535 15 6 1.3907 1.2013 -2.6331 16 6 0.1301 1.2666 -3.4951 17 8 0.3335 0.5169 -4.6953 18 6 0.5588 -0.8801 -4.4809 19 6 1.8199 -1.0638 -3.6431 20 6 3.0704 -0.7238 -4.4781 21 6 4.0630 -1.8301 -4.0339 22 8 3.2210 -2.9904 -3.8576 23 6 1.9996 -2.5352 -3.2473 24 1 -0.3633 0.6036 0.8318 25 1 -0.3633 0.4187 -0.9386 26 1 -0.3634 -1.0220 0.1067 27 1 1.9030 -0.5280 4.4376 28 1 1.1946 1.6560 -1.6621 29 1 2.2011 1.7331 -3.1316 30 1 -0.0862 2.3047 -3.7473 31 1 -0.7083 0.8448 -2.9408 32 1 0.6838 -1.3802 -5.4413 33 1 -0.2935 -1.3102 -3.9548 34 1 2.8582 -0.7964 -5.5447 35 1 3.4509 0.2657 -4.2246 36 1 4.5440 -1.5589 -3.0940 37 1 4.8079 -2.0109 -4.8089 38 1 2.0713 -2.6220 -2.1631 39 1 1.1572 -3.1233 -3.6117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597622128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:02 Heat of formation + Delta-G solvation = -102.156426 kcal Electronic energy + Delta-G solvation = -22776.527172 eV Core-core repulsion = 19492.249084 eV Total energy + Delta-G solvation = -3284.278088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.42903 -39.63605 -39.09396 -36.10333 -35.64201 -33.82101 -32.74425 -30.94498 -29.39039 -27.19020 -26.89521 -25.04059 -24.03533 -23.56918 -21.77167 -19.65289 -18.89353 -18.14690 -17.79299 -17.39670 -17.35543 -16.67653 -16.28186 -16.19355 -15.98025 -15.55446 -15.20288 -14.89863 -14.79065 -14.12796 -13.90820 -13.66924 -13.55849 -13.19639 -12.92645 -12.67954 -12.57821 -12.49776 -12.35232 -12.09439 -11.96459 -11.76187 -11.47070 -11.25876 -11.17432 -10.93274 -10.77282 -9.71322 -9.30051 -8.27821 -6.36148 1.31820 1.38191 1.49597 1.56201 1.83386 2.33276 2.76081 3.03528 3.05657 3.39213 3.52206 3.74098 3.91835 3.95610 4.15594 4.22469 4.24675 4.25414 4.35600 4.49056 4.53378 4.56711 4.64605 4.70189 4.73729 4.78719 4.83747 4.91364 4.95554 5.00176 5.11079 5.40158 5.51468 5.68937 5.91106 6.05109 6.19363 6.43259 6.79268 7.22674 7.33325 8.89730 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.007418 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.899537 B = 3773.750042 C = 4569.119631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.005 4.005 3 H 0.068 0.932 4 C -0.520 4.520 5 H 0.030 0.970 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.956 3.044 9 H -0.262 1.262 10 H -0.226 1.226 11 H -0.301 1.301 12 C 0.530 3.470 13 O -0.541 6.541 14 N -0.615 5.615 15 C 0.066 3.934 16 C 0.045 3.955 17 O -0.378 6.378 18 C 0.075 3.925 19 C 0.108 3.892 20 C -0.142 4.142 21 C 0.046 3.954 22 O -0.394 6.394 23 C -0.021 4.021 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.267 0.733 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.031 0.969 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 8.442 -18.953 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 H 0.086 0.914 4 C -0.559 4.559 5 H 0.049 0.951 6 C -0.189 4.189 7 N -0.592 5.592 8 Si 0.780 3.220 9 H -0.188 1.188 10 H -0.149 1.149 11 H -0.228 1.228 12 C 0.322 3.678 13 O -0.420 6.420 14 N -0.350 5.350 15 C -0.056 4.056 16 C -0.032 4.032 17 O -0.296 6.296 18 C -0.003 4.003 19 C 0.022 3.978 20 C -0.181 4.181 21 C -0.030 4.030 22 O -0.313 6.313 23 C -0.097 4.097 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.820 7.772 -18.960 21.302 hybrid contribution 0.063 0.001 1.327 1.329 sum -5.757 7.772 -17.633 20.111 Atomic orbital electron populations 1.22059 0.94499 1.01531 1.01531 1.19251 0.95170 0.97489 0.90711 0.91422 1.21075 1.31679 1.12857 0.90251 0.95143 1.26023 0.97408 1.00684 0.94827 1.70073 1.47608 1.42785 0.98756 0.85770 0.78813 0.79197 0.78206 1.18752 1.14870 1.22844 1.21138 0.77610 0.84344 0.84705 1.90191 1.38563 1.27211 1.86041 1.47927 1.70821 1.11284 1.05009 1.22700 0.99398 0.80419 1.03069 1.23135 0.95239 0.99000 0.85831 1.87984 1.92020 1.18994 1.30645 1.22855 0.93466 0.83395 1.00590 1.22124 0.98441 0.91032 0.86175 1.23350 0.94006 0.99650 1.01082 1.23604 0.94285 0.85210 0.99913 1.88781 1.28490 1.31944 1.82078 1.24900 0.87488 0.92370 1.04895 0.93193 0.90067 0.93792 0.92433 0.87712 0.89277 0.84297 0.92016 0.85558 0.92150 0.87359 0.89475 0.95102 0.86852 0.86466 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.29 71.98 0.60 -4.47 16 2 C 0.00 -0.20 1.39 -12.29 -0.02 -0.22 16 3 H 0.07 2.72 6.12 -2.39 -0.01 2.71 16 4 C -0.52 -30.25 8.95 25.60 0.23 -30.02 16 5 H 0.03 2.10 7.00 -2.91 -0.02 2.08 16 6 C 0.01 0.41 5.45 84.66 0.46 0.87 16 7 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 8 Si 0.96 41.55 24.31 68.60 1.67 43.22 16 9 H -0.26 -10.69 6.92 99.48 0.69 -10.00 16 10 H -0.23 -8.22 6.53 99.48 0.65 -7.57 16 11 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 12 C 0.53 22.10 6.46 87.66 0.57 22.67 16 13 O -0.54 -27.46 11.93 -3.03 -0.04 -27.49 16 14 N -0.62 -18.75 2.62 -771.26 -2.02 -20.76 16 15 C 0.07 1.43 5.41 86.17 0.47 1.89 16 16 C 0.04 0.75 6.86 71.94 0.49 1.24 16 17 O -0.38 -7.47 10.68 -148.98 -1.59 -9.06 16 18 C 0.07 1.55 5.40 71.82 0.39 1.94 16 19 C 0.11 2.96 0.91 4.01 0.00 2.96 16 20 C -0.14 -3.45 6.23 31.72 0.20 -3.25 16 21 C 0.05 1.38 7.73 72.71 0.56 1.94 16 22 O -0.39 -14.15 11.53 -148.98 -1.72 -15.87 16 23 C -0.02 -0.73 6.42 72.13 0.46 -0.26 16 24 H 0.05 1.82 3.45 -2.39 -0.01 1.81 16 25 H 0.08 2.19 5.43 -2.38 -0.01 2.18 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.10 2.26 5.36 -2.38 -0.01 2.24 16 29 H 0.09 1.68 7.56 -2.39 -0.02 1.67 16 30 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.03 7.05 -2.39 -0.02 1.02 16 32 H 0.13 2.12 7.93 -2.39 -0.02 2.10 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.11 2.07 7.72 -2.39 -0.02 2.05 16 35 H 0.09 2.02 7.27 -2.38 -0.02 2.01 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.12 5.23 3.62 -105.38 -0.38 4.85 16 39 H 0.09 2.56 7.69 -2.39 -0.02 2.54 16 Total: -1.00 -76.33 290.30 1.63 -74.70 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.62 Total: 20.09 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.41 Total: -4.69 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.72 Total: -80.90 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -3.35 Total: -52.42 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.67 Total: 43.22 kcal Total: -76.33 1.63 -74.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597622128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.460 kcal (2) G-P(sol) polarization free energy of solvation -76.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds