Wall clock time and date at job start Mon Mar 30 2020 04:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47245 * 2 1 4 4 C 1.50703 * 109.47540 * 240.00290 * 2 1 3 5 5 H 1.08001 * 119.99586 * 245.52416 * 4 2 1 6 6 C 1.37872 * 120.00146 * 65.52432 * 4 2 1 7 7 N 1.31516 * 120.00059 * 5.39209 * 6 4 2 8 8 Si 1.86796 * 120.00284 * 185.40272 * 6 4 2 9 9 H 1.48497 * 109.47405 * 94.98893 * 8 6 4 10 10 H 1.48503 * 109.47368 * 214.99687 * 8 6 4 11 11 H 1.48510 * 109.46961 * 334.99171 * 8 6 4 12 12 C 1.50703 * 109.47133 * 120.00009 * 2 1 3 13 13 O 1.21274 * 120.00001 * 118.07982 * 12 2 1 14 14 N 1.34782 * 119.99824 * 298.07401 * 12 2 1 15 15 C 1.47343 * 121.00055 * 352.48402 * 14 12 2 16 16 C 1.53321 * 108.23803 * 130.61107 * 15 14 12 17 17 O 1.42978 * 109.37546 * 52.91794 * 16 15 14 18 18 C 1.43120 * 114.10379 * 296.92146 * 17 16 15 19 19 C 1.46347 * 120.99863 * 172.45391 * 14 12 2 20 20 C 1.54141 * 110.20764 * 350.47635 * 19 14 12 21 21 C 1.55146 * 101.94204 * 98.50839 * 20 19 14 22 22 O 1.44438 * 103.57010 * 36.48239 * 21 20 19 23 23 C 1.43916 * 106.99661 * 320.35443 * 22 21 20 24 24 H 1.09001 * 109.47174 * 54.63952 * 1 2 3 25 25 H 1.09004 * 109.46893 * 174.63587 * 1 2 3 26 26 H 1.08996 * 109.47553 * 294.63470 * 1 2 3 27 27 H 0.97004 * 120.00283 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.71338 * 10.92391 * 15 14 12 29 29 H 1.09005 * 109.70958 * 250.29583 * 15 14 12 30 30 H 1.08996 * 109.48433 * 292.94576 * 16 15 14 31 31 H 1.09000 * 109.48767 * 172.88583 * 16 15 14 32 32 H 1.08996 * 109.50964 * 181.15654 * 18 17 16 33 33 H 1.09000 * 109.50555 * 301.24022 * 18 17 16 34 34 H 1.09003 * 110.93646 * 216.67031 * 20 19 14 35 35 H 1.08997 * 110.93826 * 340.34913 * 20 19 14 36 36 H 1.08997 * 110.60323 * 277.96014 * 21 20 19 37 37 H 1.09006 * 110.73926 * 155.06670 * 21 20 19 38 38 H 1.08998 * 109.91433 * 267.00109 * 23 22 21 39 39 H 1.09004 * 109.91588 * 145.71081 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5778 -1.6375 -1.1338 6 6 1.7959 -0.1766 -2.4795 7 7 1.2260 1.0032 -2.5933 8 14 2.2845 -1.1293 -4.0102 9 1 1.1165 -1.8995 -4.5078 10 1 2.7361 -0.1813 -5.0602 11 1 3.3896 -2.0646 -3.6794 12 6 2.0323 -0.7104 1.2305 13 8 2.7005 -1.7164 1.1195 14 7 1.7390 -0.2277 2.4542 15 6 1.0721 1.0762 2.6159 16 6 -0.1135 0.8936 3.5708 17 8 0.3394 0.2707 4.7755 18 6 0.8640 -1.0479 4.5902 19 6 2.0729 -0.9832 3.6624 20 6 2.5386 -2.4045 3.2898 21 6 4.0824 -2.2607 3.3428 22 8 4.3009 -1.3572 4.4483 23 6 3.2736 -0.3517 4.3791 24 1 -0.3633 0.5947 -0.8381 25 1 -0.3633 -1.0232 -0.0961 26 1 -0.3634 0.4283 0.9341 27 1 1.0593 1.3786 -3.4721 28 1 0.7141 1.4285 1.6485 29 1 1.7732 1.7984 3.0342 30 1 -0.8678 0.2650 3.0978 31 1 -0.5452 1.8667 3.8047 32 1 1.1665 -1.4580 5.5537 33 1 0.0986 -1.6853 4.1475 34 1 2.1899 -3.1330 4.0219 35 1 2.2066 -2.6729 2.2869 36 1 4.4596 -1.8302 2.4152 37 1 4.5535 -3.2245 3.5363 38 1 3.6331 0.5082 3.8140 39 1 2.9862 -0.0447 5.3848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597622129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:04 Heat of formation + Delta-G solvation = -87.731871 kcal Electronic energy + Delta-G solvation = -22693.583481 eV Core-core repulsion = 19409.930889 eV Total energy + Delta-G solvation = -3283.652592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02689 -38.04540 -37.91691 -34.47513 -33.97059 -32.35815 -30.32878 -29.40772 -28.13233 -25.74446 -25.22298 -23.39002 -23.02242 -21.78781 -20.46558 -18.34327 -16.83101 -16.54211 -16.08767 -16.04448 -15.84355 -15.19773 -14.94809 -14.69289 -14.37809 -14.22513 -13.91634 -13.29185 -13.03802 -12.56441 -12.30798 -12.03031 -11.83779 -11.39146 -11.31685 -11.19579 -11.05545 -10.94505 -10.84709 -10.56579 -10.45307 -10.26012 -9.97620 -9.89106 -9.39736 -9.09309 -8.48314 -8.25709 -7.98325 -6.13167 -4.13518 3.24046 3.28438 3.35522 3.41680 3.43268 3.77998 4.25431 4.40232 4.61532 4.74528 4.93993 5.06692 5.19276 5.22980 5.33163 5.45824 5.53292 5.55444 5.67079 5.71074 5.83232 5.84586 5.97000 6.02452 6.07748 6.36617 6.43838 6.52059 6.66562 6.75749 6.90139 7.05031 7.23758 7.32606 7.54717 7.86324 7.91667 8.24313 8.94184 9.03504 9.51643 10.97206 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.006791 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.173281 B = 4121.971015 C = 4904.914176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.030 3.970 3 H 0.057 0.943 4 C -0.503 4.503 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.525 3.475 13 O -0.524 6.524 14 N -0.616 5.616 15 C 0.067 3.933 16 C 0.046 3.954 17 O -0.381 6.381 18 C 0.068 3.932 19 C 0.107 3.893 20 C -0.182 4.182 21 C 0.058 3.942 22 O -0.388 6.388 23 C 0.049 3.951 24 H 0.078 0.922 25 H 0.035 0.965 26 H 0.023 0.977 27 H 0.261 0.739 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.153 0.847 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.696 -0.449 12.410 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.009 3.991 3 H 0.075 0.925 4 C -0.541 4.541 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.319 3.681 13 O -0.401 6.401 14 N -0.352 5.352 15 C -0.056 4.056 16 C -0.032 4.032 17 O -0.300 6.300 18 C -0.009 4.009 19 C 0.020 3.980 20 C -0.219 4.219 21 C -0.018 4.018 22 O -0.307 6.307 23 C -0.029 4.029 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.226 -0.785 12.516 12.737 hybrid contribution 0.018 -0.349 -1.189 1.240 sum -2.208 -1.134 11.327 11.596 Atomic orbital electron populations 1.21897 0.96820 1.00693 0.99831 1.18894 0.93723 0.97296 0.89224 0.92498 1.21091 1.35334 1.08717 0.89004 0.90707 1.24939 0.95165 0.94794 0.99150 1.69923 1.43650 1.15943 1.23909 0.86467 0.78877 0.79769 0.82304 1.20719 1.21290 1.19669 1.22044 0.77755 0.84520 0.83814 1.90254 1.38425 1.25857 1.85604 1.48169 1.61712 1.20131 1.05162 1.22629 0.94898 0.85530 1.02529 1.23033 0.95542 0.98819 0.85773 1.87956 1.81229 1.29688 1.31091 1.22827 0.93856 0.84747 0.99504 1.21970 0.95459 0.93757 0.86779 1.24211 0.96911 0.93376 1.07377 1.23578 0.95055 0.93290 0.89873 1.88827 1.51080 1.40929 1.49854 1.23434 0.87187 0.91707 1.00613 0.90313 0.94547 0.95876 0.92905 0.86545 0.91292 0.92318 0.87786 0.87884 0.92359 0.92142 0.83051 0.90715 0.89861 0.92199 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.49 37.16 0.32 -2.52 16 2 C 0.03 0.69 1.67 -92.92 -0.16 0.53 16 3 H 0.06 1.40 7.62 -51.93 -0.40 1.01 16 4 C -0.50 -13.57 8.30 -34.44 -0.29 -13.86 16 5 H 0.07 2.12 6.77 -52.49 -0.36 1.77 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 7 N -0.90 -24.39 12.01 55.43 0.67 -23.72 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.53 11.13 6.77 -10.98 -0.07 11.06 16 13 O -0.52 -12.05 9.75 5.56 0.05 -11.99 16 14 N -0.62 -10.57 2.60 -157.44 -0.41 -10.98 16 15 C 0.07 0.97 5.51 -3.41 -0.02 0.95 16 16 C 0.05 0.56 6.78 37.32 0.25 0.81 16 17 O -0.38 -5.10 10.70 -35.23 -0.38 -5.48 16 18 C 0.07 0.90 5.33 36.91 0.20 1.09 16 19 C 0.11 1.66 0.91 -131.32 -0.12 1.54 16 20 C -0.18 -2.96 5.62 -25.00 -0.14 -3.10 16 21 C 0.06 0.98 7.33 38.29 0.28 1.26 16 22 O -0.39 -6.65 11.53 -35.23 -0.41 -7.06 16 23 C 0.05 0.76 6.94 37.38 0.26 1.02 16 24 H 0.08 1.82 6.87 -51.93 -0.36 1.46 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.02 0.39 4.78 -51.93 -0.25 0.15 16 27 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.12 1.77 4.44 -51.93 -0.23 1.54 16 29 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 30 H 0.06 0.73 7.69 -51.93 -0.40 0.33 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.84 7.86 -51.93 -0.41 0.44 16 35 H 0.15 2.91 4.60 -56.83 -0.26 2.65 16 36 H 0.07 1.45 6.73 -51.93 -0.35 1.10 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 39 H 0.09 1.19 7.66 -51.93 -0.40 0.79 16 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -29.08 296.35 -6.09 -35.17 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.48 Total: 3.07 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 0.42 Total: 0.32 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.26 Total: -34.70 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.73 Total: -24.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.08 -6.09 -35.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597622129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.566 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds