Wall clock time and date at job start Mon Mar 30 2020 04:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47245 * 2 1 4 4 C 1.50703 * 109.47540 * 240.00290 * 2 1 3 5 5 H 1.08001 * 119.99586 * 245.52416 * 4 2 1 6 6 C 1.37872 * 120.00146 * 65.52432 * 4 2 1 7 7 N 1.31516 * 120.00059 * 5.39209 * 6 4 2 8 8 Si 1.86796 * 120.00284 * 185.40272 * 6 4 2 9 9 H 1.48497 * 109.47405 * 94.98893 * 8 6 4 10 10 H 1.48503 * 109.47368 * 214.99687 * 8 6 4 11 11 H 1.48510 * 109.46961 * 334.99171 * 8 6 4 12 12 C 1.50703 * 109.47133 * 120.00009 * 2 1 3 13 13 O 1.21274 * 120.00001 * 118.07982 * 12 2 1 14 14 N 1.34782 * 119.99824 * 298.07401 * 12 2 1 15 15 C 1.47343 * 121.00055 * 352.48402 * 14 12 2 16 16 C 1.53321 * 108.23803 * 130.61107 * 15 14 12 17 17 O 1.42978 * 109.37546 * 52.91794 * 16 15 14 18 18 C 1.43120 * 114.10379 * 296.92146 * 17 16 15 19 19 C 1.46347 * 120.99863 * 172.45391 * 14 12 2 20 20 C 1.54141 * 110.20764 * 350.47635 * 19 14 12 21 21 C 1.55146 * 101.94204 * 98.50839 * 20 19 14 22 22 O 1.44438 * 103.57010 * 36.48239 * 21 20 19 23 23 C 1.43916 * 106.99661 * 320.35443 * 22 21 20 24 24 H 1.09001 * 109.47174 * 54.63952 * 1 2 3 25 25 H 1.09004 * 109.46893 * 174.63587 * 1 2 3 26 26 H 1.08996 * 109.47553 * 294.63470 * 1 2 3 27 27 H 0.97004 * 120.00283 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.71338 * 10.92391 * 15 14 12 29 29 H 1.09005 * 109.70958 * 250.29583 * 15 14 12 30 30 H 1.08996 * 109.48433 * 292.94576 * 16 15 14 31 31 H 1.09000 * 109.48767 * 172.88583 * 16 15 14 32 32 H 1.08996 * 109.50964 * 181.15654 * 18 17 16 33 33 H 1.09000 * 109.50555 * 301.24022 * 18 17 16 34 34 H 1.09003 * 110.93646 * 216.67031 * 20 19 14 35 35 H 1.08997 * 110.93826 * 340.34913 * 20 19 14 36 36 H 1.08997 * 110.60323 * 277.96014 * 21 20 19 37 37 H 1.09006 * 110.73926 * 155.06670 * 21 20 19 38 38 H 1.08998 * 109.91433 * 267.00109 * 23 22 21 39 39 H 1.09004 * 109.91588 * 145.71081 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5778 -1.6375 -1.1338 6 6 1.7959 -0.1766 -2.4795 7 7 1.2260 1.0032 -2.5933 8 14 2.2845 -1.1293 -4.0102 9 1 1.1165 -1.8995 -4.5078 10 1 2.7361 -0.1813 -5.0602 11 1 3.3896 -2.0646 -3.6794 12 6 2.0323 -0.7104 1.2305 13 8 2.7005 -1.7164 1.1195 14 7 1.7390 -0.2277 2.4542 15 6 1.0721 1.0762 2.6159 16 6 -0.1135 0.8936 3.5708 17 8 0.3394 0.2707 4.7755 18 6 0.8640 -1.0479 4.5902 19 6 2.0729 -0.9832 3.6624 20 6 2.5386 -2.4045 3.2898 21 6 4.0824 -2.2607 3.3428 22 8 4.3009 -1.3572 4.4483 23 6 3.2736 -0.3517 4.3791 24 1 -0.3633 0.5947 -0.8381 25 1 -0.3633 -1.0232 -0.0961 26 1 -0.3634 0.4283 0.9341 27 1 1.0593 1.3786 -3.4721 28 1 0.7141 1.4285 1.6485 29 1 1.7732 1.7984 3.0342 30 1 -0.8678 0.2650 3.0978 31 1 -0.5452 1.8667 3.8047 32 1 1.1665 -1.4580 5.5537 33 1 0.0986 -1.6853 4.1475 34 1 2.1899 -3.1330 4.0219 35 1 2.2066 -2.6729 2.2869 36 1 4.4596 -1.8302 2.4152 37 1 4.5535 -3.2245 3.5363 38 1 3.6331 0.5082 3.8140 39 1 2.9862 -0.0447 5.3848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597622129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:04 Heat of formation + Delta-G solvation = -107.994748 kcal Electronic energy + Delta-G solvation = -22694.462145 eV Core-core repulsion = 19409.930889 eV Total energy + Delta-G solvation = -3284.531256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.37046 -39.53910 -39.09044 -36.05373 -35.59242 -33.80900 -32.07370 -30.67279 -29.41200 -27.24512 -26.82409 -24.71742 -24.57745 -23.05894 -21.93999 -19.77429 -18.38774 -18.16081 -17.53246 -17.29636 -17.02129 -16.77433 -16.40425 -16.05142 -15.87136 -15.56665 -15.33857 -14.83367 -14.48540 -14.16414 -13.62864 -13.52315 -13.18583 -12.93054 -12.86039 -12.78860 -12.59389 -12.48329 -12.28362 -12.17136 -12.03724 -11.78743 -11.51699 -11.15941 -11.05616 -10.73322 -10.52866 -9.70474 -9.46681 -8.19487 -6.25465 1.38544 1.40580 1.51332 1.78013 1.90754 2.43222 2.77186 2.98229 3.13825 3.41134 3.57588 3.78142 3.93613 4.03258 4.22191 4.24004 4.25554 4.35080 4.51298 4.57609 4.61543 4.69367 4.70672 4.77565 4.81637 4.85277 4.94464 5.02888 5.03922 5.17620 5.45470 5.56866 5.71000 5.81997 5.95517 6.03801 6.14405 6.49816 6.83143 7.37937 7.45651 8.89616 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.006791 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.173281 B = 4121.971015 C = 4904.914176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.028 3.972 3 H 0.039 0.961 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.521 3.479 13 O -0.550 6.550 14 N -0.610 5.610 15 C 0.060 3.940 16 C 0.050 3.950 17 O -0.382 6.382 18 C 0.073 3.927 19 C 0.103 3.897 20 C -0.178 4.178 21 C 0.059 3.941 22 O -0.395 6.395 23 C 0.049 3.951 24 H 0.056 0.944 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.264 0.736 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.039 0.961 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 -0.362 14.214 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.007 3.993 3 H 0.057 0.943 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.314 3.686 13 O -0.429 6.429 14 N -0.345 5.345 15 C -0.062 4.062 16 C -0.027 4.027 17 O -0.300 6.300 18 C -0.004 4.004 19 C 0.017 3.983 20 C -0.215 4.215 21 C -0.017 4.017 22 O -0.315 6.315 23 C -0.028 4.028 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.063 0.937 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.289 -0.672 14.349 14.737 hybrid contribution 0.389 -0.345 -1.716 1.793 sum -2.900 -1.017 12.633 13.002 Atomic orbital electron populations 1.21696 0.95111 0.99893 1.00951 1.18770 0.95069 0.95974 0.89507 0.94299 1.21264 1.35670 1.08352 0.91059 0.93034 1.25548 0.95261 0.95592 1.01375 1.69991 1.44032 1.16589 1.24517 0.85654 0.78492 0.78671 0.79510 1.19858 1.20440 1.20418 1.21570 0.78086 0.84254 0.84727 1.90286 1.39469 1.26850 1.86343 1.48067 1.60892 1.20970 1.04524 1.22852 0.96135 0.84314 1.02897 1.23135 0.94126 1.00492 0.84929 1.87971 1.81032 1.29675 1.31307 1.22885 0.92555 0.85016 0.99949 1.22199 0.96893 0.92939 0.86263 1.24040 0.96272 0.94674 1.06515 1.23506 0.95847 0.93837 0.88512 1.88819 1.51896 1.41254 1.49485 1.23517 0.86697 0.90855 1.01781 0.92528 0.95500 0.91970 0.92676 0.87603 0.90128 0.92217 0.84548 0.85356 0.91938 0.89213 0.85916 0.94220 0.87847 0.93698 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 8.49 71.98 0.61 -4.40 16 2 C 0.03 1.34 1.67 -12.29 -0.02 1.31 16 3 H 0.04 1.99 7.62 -2.38 -0.02 1.97 16 4 C -0.53 -29.26 8.30 25.60 0.21 -29.05 16 5 H 0.05 3.06 6.77 -2.91 -0.02 3.04 16 6 C 0.02 1.18 5.29 84.65 0.45 1.63 16 7 N -0.91 -50.27 12.01 21.45 0.26 -50.01 16 8 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 C 0.52 22.52 6.77 87.66 0.59 23.11 16 13 O -0.55 -26.22 9.75 -3.01 -0.03 -26.25 16 14 N -0.61 -20.43 2.60 -770.40 -2.00 -22.44 16 15 C 0.06 1.62 5.51 86.33 0.48 2.09 16 16 C 0.05 1.05 6.78 72.09 0.49 1.54 16 17 O -0.38 -8.67 10.70 -148.98 -1.59 -10.26 16 18 C 0.07 1.66 5.33 71.82 0.38 2.05 16 19 C 0.10 3.00 0.91 4.01 0.00 3.00 16 20 C -0.18 -5.59 5.62 31.72 0.18 -5.42 16 21 C 0.06 1.97 7.33 72.72 0.53 2.50 16 22 O -0.40 -12.99 11.53 -148.98 -1.72 -14.71 16 23 C 0.05 1.44 6.94 72.13 0.50 1.94 16 24 H 0.06 2.63 6.87 -2.39 -0.02 2.62 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 2.08 4.78 -2.39 -0.01 2.07 16 27 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 28 H 0.11 3.09 4.44 -2.39 -0.01 3.08 16 29 H 0.08 2.01 8.12 -2.38 -0.02 1.99 16 30 H 0.06 1.27 7.69 -2.39 -0.02 1.25 16 31 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.13 2.31 8.07 -2.39 -0.02 2.29 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 2.27 7.86 -2.39 -0.02 2.25 16 35 H 0.12 4.76 4.60 -79.97 -0.37 4.39 16 36 H 0.04 1.60 6.73 -2.39 -0.02 1.58 16 37 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 38 H 0.04 1.44 7.88 -2.39 -0.02 1.42 16 39 H 0.11 2.70 7.66 -2.39 -0.02 2.69 16 Total: -1.00 -63.91 296.35 2.05 -61.87 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.70 Total: 15.35 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 4.41 Total: 0.31 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -1.74 Total: -72.45 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -3.34 Total: -51.23 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -63.91 2.05 -61.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597622129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.129 kcal (2) G-P(sol) polarization free energy of solvation -63.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds