Wall clock time and date at job start Mon Mar 30 2020 05:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47053 * 125.41067 * 2 1 4 4 C 1.54101 * 103.86490 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.54896 * 241.26559 * 4 3 2 6 6 C 1.50696 * 110.55014 * 118.59329 * 4 3 2 7 7 O 1.21284 * 120.00489 * 260.00283 * 6 4 3 8 8 N 1.34777 * 119.99757 * 80.00494 * 6 4 3 9 9 C 1.46506 * 120.00264 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47317 * 59.99940 * 10 9 8 12 12 C 1.52992 * 109.46961 * 299.99478 * 10 9 8 13 13 C 1.50706 * 109.46573 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48510 * 109.47116 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 N 1.47057 * 103.86068 * 0.02562 * 4 3 2 22 22 C 1.33945 * 125.40995 * 180.02562 * 2 1 3 23 23 O 1.21592 * 123.04538 * 359.96690 * 22 2 1 24 24 H 1.08998 * 109.47395 * 89.99396 * 1 2 3 25 25 H 1.08999 * 109.47095 * 209.99685 * 1 2 3 26 26 H 1.08999 * 109.46978 * 329.98910 * 1 2 3 27 27 H 1.08999 * 110.54483 * 61.41264 * 3 2 1 28 28 H 1.08997 * 110.55012 * 298.60133 * 3 2 1 29 29 H 0.96999 * 120.00047 * 359.97438 * 8 6 4 30 30 H 1.09000 * 109.47020 * 59.99522 * 9 8 6 31 31 H 1.09001 * 109.46379 * 299.99687 * 9 8 6 32 32 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 33 33 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 34 34 H 1.09004 * 109.47261 * 59.99813 * 11 10 9 35 35 H 1.09001 * 109.47066 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47747 * 300.00196 * 12 10 9 37 37 H 1.09002 * 109.47103 * 60.00608 * 12 10 9 38 38 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 39 39 H 0.97002 * 125.41191 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2868 0.9482 0.8942 6 6 4.4900 1.0668 -1.2398 7 8 4.6015 0.3057 -2.1775 8 7 5.0276 2.3009 -1.3060 9 6 5.7461 2.7233 -2.5108 10 6 6.2516 4.1557 -2.3273 11 6 7.1951 4.2134 -1.1242 12 6 5.0632 5.0892 -2.0887 13 6 6.9913 4.5899 -3.5665 14 1 7.0912 3.9119 -4.4012 15 6 7.5404 5.8528 -3.6345 16 7 7.4192 6.6782 -2.6178 17 14 8.4566 6.3912 -5.1707 18 1 7.5047 7.0244 -6.1185 19 1 9.5112 7.3694 -4.8009 20 1 9.0825 5.2082 -5.8140 21 7 3.5537 -0.8248 -0.0016 22 6 2.2411 -1.0917 -0.0005 23 8 1.7946 -2.2226 -0.0004 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 2.1407 1.7933 0.8962 28 1 2.1406 1.7934 -0.8961 29 1 4.9381 2.9097 -0.5562 30 1 5.0738 2.6826 -3.3678 31 1 6.5925 2.0579 -2.6810 32 1 6.6605 3.8992 -0.2278 33 1 7.5555 5.2338 -0.9938 34 1 8.0418 3.5483 -1.2942 35 1 5.4233 6.1097 -1.9584 36 1 4.3910 5.0482 -2.9458 37 1 4.5286 4.7750 -1.1923 38 1 7.8058 7.5665 -2.6656 39 1 4.2620 -1.4875 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597760979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:26 Heat of formation + Delta-G solvation = -50.932323 kcal Electronic energy + Delta-G solvation = -21104.003860 eV Core-core repulsion = 17854.239767 eV Total energy + Delta-G solvation = -3249.764093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37833 -39.12755 -36.64136 -36.10663 -34.18600 -33.45214 -31.10633 -29.47009 -27.44957 -25.82064 -25.71761 -25.06736 -23.50633 -20.66395 -20.42606 -18.94607 -17.82157 -17.65420 -16.42725 -16.03439 -15.58763 -15.20039 -14.96294 -14.65854 -14.28623 -14.06682 -13.62301 -13.57981 -13.08731 -12.98621 -12.58742 -12.50947 -12.29104 -12.11183 -11.46237 -11.27442 -10.93202 -10.75595 -10.47872 -10.35587 -10.28075 -10.05533 -9.73260 -9.50506 -9.22997 -8.88408 -8.69776 -8.59870 -8.42077 -6.09053 -4.19247 2.36797 2.74903 2.97979 3.24070 3.31459 3.33906 3.39458 3.85667 4.15719 4.34487 4.61935 4.68284 4.93099 5.12471 5.18154 5.24764 5.38413 5.52014 5.72216 6.10617 6.21339 6.40183 6.48963 6.64410 6.71736 6.81386 6.86689 6.91934 6.98822 7.25480 7.32198 7.46607 7.62332 7.84626 7.92722 8.05457 8.29637 8.44492 8.51150 8.81243 9.47153 10.92305 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041397 B = 0.003837 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.212611 B = 7295.286395 C = 7457.913782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.638 5.638 3 C 0.106 3.894 4 C 0.102 3.898 5 H 0.115 0.885 6 C 0.492 3.508 7 O -0.533 6.533 8 N -0.710 5.710 9 C 0.131 3.869 10 C 0.055 3.945 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.714 5.714 22 C 0.705 3.295 23 O -0.587 6.587 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.399 0.601 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.006 0.994 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.006 0.994 38 H 0.260 0.740 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -5.100 9.075 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.378 5.378 3 C -0.019 4.019 4 C -0.009 4.009 5 H 0.133 0.867 6 C 0.274 3.726 7 O -0.410 6.410 8 N -0.361 5.361 9 C 0.009 3.991 10 C 0.055 3.945 11 C -0.189 4.189 12 C -0.188 4.188 13 C -0.546 4.546 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.375 5.375 22 C 0.405 3.595 23 O -0.466 6.466 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.235 0.765 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.432 -6.018 8.432 14.010 hybrid contribution 0.926 0.595 -0.557 1.234 sum -8.506 -5.422 7.875 12.797 Atomic orbital electron populations 1.21383 0.75466 1.03095 1.02024 1.46999 1.06414 1.05678 1.78668 1.22309 0.86375 0.88986 1.04187 1.21889 0.97172 0.83138 0.98660 0.86709 1.20610 0.80288 0.82918 0.88752 1.90731 1.59167 1.53016 1.38076 1.46322 1.54884 1.14088 1.20810 1.21783 0.94532 0.98209 0.84574 1.18370 0.92939 0.87682 0.95531 1.21834 0.98348 1.03573 0.95098 1.21832 0.96729 1.04026 0.96256 1.20973 1.34331 0.99076 1.00224 0.92445 1.24867 0.95868 0.96447 0.96239 1.69791 1.45293 1.07395 1.29917 0.86574 0.79562 0.78509 0.83249 1.20689 1.21237 1.19898 1.44802 1.06849 1.06346 1.79463 1.15795 0.81722 0.84584 0.77353 1.90947 1.75955 1.20942 1.58715 0.92628 0.90413 0.90801 0.88743 0.89361 0.76519 0.92564 0.92524 0.97479 0.89545 0.95415 0.89544 0.95420 0.97469 0.92955 0.72434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.07 11.03 59.85 0.66 1.73 16 2 N -0.64 -7.45 3.36 -186.74 -0.63 -8.08 16 3 C 0.11 0.99 7.32 -3.17 -0.02 0.97 16 4 C 0.10 1.11 4.17 -68.21 -0.28 0.82 16 5 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 6 C 0.49 7.40 6.95 -10.99 -0.08 7.33 16 7 O -0.53 -10.49 16.56 5.55 0.09 -10.39 16 8 N -0.71 -10.77 4.96 -60.29 -0.30 -11.07 16 9 C 0.13 2.56 4.50 -4.04 -0.02 2.54 16 10 C 0.06 1.19 0.50 -155.66 -0.08 1.12 16 11 C -0.13 -2.72 8.08 37.16 0.30 -2.42 16 12 C -0.13 -2.70 8.08 37.15 0.30 -2.40 16 13 C -0.51 -12.71 8.01 -34.44 -0.28 -12.99 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 16 N -0.89 -22.62 9.35 55.43 0.52 -22.10 16 17 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 21 N -0.71 -9.20 5.60 -59.33 -0.33 -9.53 16 22 C 0.71 10.52 8.60 -88.40 -0.76 9.76 16 23 O -0.59 -10.88 17.53 5.29 0.09 -10.79 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.71 7.91 -51.93 -0.41 0.30 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.87 7.72 -51.93 -0.40 0.47 16 29 H 0.40 5.16 6.16 -40.82 -0.25 4.90 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.09 2.03 6.07 -51.93 -0.32 1.71 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 2.02 6.07 -51.93 -0.32 1.70 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 38 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 39 H 0.43 5.22 8.96 -40.82 -0.37 4.86 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -31.89 318.43 -6.82 -38.71 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.70 Total: 5.30 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.35 Total: 8.06 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.74 Total: -50.78 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.18 Total: -21.18 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.89 -6.82 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597760979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.218 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds