Wall clock time and date at job start Mon Mar 30 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47053 * 125.41067 * 2 1 4 4 C 1.54101 * 103.86490 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.54896 * 241.26559 * 4 3 2 6 6 C 1.50696 * 110.55014 * 118.59329 * 4 3 2 7 7 O 1.21284 * 120.00489 * 260.00283 * 6 4 3 8 8 N 1.34777 * 119.99757 * 80.00494 * 6 4 3 9 9 C 1.46506 * 120.00264 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47075 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47317 * 59.99940 * 10 9 8 12 12 C 1.52992 * 109.46961 * 299.99478 * 10 9 8 13 13 C 1.50706 * 109.46573 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48510 * 109.47116 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 N 1.47057 * 103.86068 * 0.02562 * 4 3 2 22 22 C 1.33945 * 125.40995 * 180.02562 * 2 1 3 23 23 O 1.21592 * 123.04538 * 359.96690 * 22 2 1 24 24 H 1.08998 * 109.47395 * 89.99396 * 1 2 3 25 25 H 1.08999 * 109.47095 * 209.99685 * 1 2 3 26 26 H 1.08999 * 109.46978 * 329.98910 * 1 2 3 27 27 H 1.08999 * 110.54483 * 61.41264 * 3 2 1 28 28 H 1.08997 * 110.55012 * 298.60133 * 3 2 1 29 29 H 0.96999 * 120.00047 * 359.97438 * 8 6 4 30 30 H 1.09000 * 109.47020 * 59.99522 * 9 8 6 31 31 H 1.09001 * 109.46379 * 299.99687 * 9 8 6 32 32 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 33 33 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 34 34 H 1.09004 * 109.47261 * 59.99813 * 11 10 9 35 35 H 1.09001 * 109.47066 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47747 * 300.00196 * 12 10 9 37 37 H 1.09002 * 109.47103 * 60.00608 * 12 10 9 38 38 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 39 39 H 0.97002 * 125.41191 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2868 0.9482 0.8942 6 6 4.4900 1.0668 -1.2398 7 8 4.6015 0.3057 -2.1775 8 7 5.0276 2.3009 -1.3060 9 6 5.7461 2.7233 -2.5108 10 6 6.2516 4.1557 -2.3273 11 6 7.1951 4.2134 -1.1242 12 6 5.0632 5.0892 -2.0887 13 6 6.9913 4.5899 -3.5665 14 1 7.0912 3.9119 -4.4012 15 6 7.5404 5.8528 -3.6345 16 7 7.4192 6.6782 -2.6178 17 14 8.4566 6.3912 -5.1707 18 1 7.5047 7.0244 -6.1185 19 1 9.5112 7.3694 -4.8009 20 1 9.0825 5.2082 -5.8140 21 7 3.5537 -0.8248 -0.0016 22 6 2.2411 -1.0917 -0.0005 23 8 1.7946 -2.2226 -0.0004 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 2.1407 1.7933 0.8962 28 1 2.1406 1.7934 -0.8961 29 1 4.9381 2.9097 -0.5562 30 1 5.0738 2.6826 -3.3678 31 1 6.5925 2.0579 -2.6810 32 1 6.6605 3.8992 -0.2278 33 1 7.5555 5.2338 -0.9938 34 1 8.0418 3.5483 -1.2942 35 1 5.4233 6.1097 -1.9584 36 1 4.3910 5.0482 -2.9458 37 1 4.5286 4.7750 -1.1923 38 1 7.8058 7.5665 -2.6656 39 1 4.2620 -1.4875 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597760979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:25 Heat of formation + Delta-G solvation = -75.150984 kcal Electronic energy + Delta-G solvation = -21105.054060 eV Core-core repulsion = 17854.239767 eV Total energy + Delta-G solvation = -3250.814293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.38660 -40.42680 -38.17765 -37.32319 -35.11174 -35.00685 -32.81244 -30.48632 -28.32081 -27.49406 -27.37585 -26.62976 -24.55950 -21.70517 -21.59153 -20.59674 -18.99757 -18.68111 -17.74967 -17.42942 -16.87631 -16.64297 -16.25910 -16.13533 -15.23309 -15.17389 -14.96194 -14.72171 -14.51410 -14.43196 -13.95766 -13.50335 -13.23697 -13.15342 -13.04287 -12.92120 -12.64409 -12.59068 -12.20257 -12.11942 -11.54288 -11.43496 -11.36792 -11.14290 -10.67348 -10.38545 -10.36877 -9.96484 -9.57759 -8.00743 -6.15524 1.39146 1.42604 1.46768 1.53678 1.65309 1.89728 2.25558 2.48712 2.93408 3.23319 3.30412 3.64478 3.92923 4.15550 4.45190 4.51332 4.54519 4.56479 4.72626 4.77656 4.87856 4.95653 5.04353 5.12408 5.15390 5.25760 5.38463 5.60698 5.62749 5.70657 5.73689 6.02036 6.22736 6.26862 6.34420 6.47416 6.64109 6.88902 7.26140 7.44076 7.52241 8.97489 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041397 B = 0.003837 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.212611 B = 7295.286395 C = 7457.913782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.637 5.637 3 C 0.104 3.896 4 C 0.110 3.890 5 H 0.164 0.836 6 C 0.494 3.506 7 O -0.584 6.584 8 N -0.697 5.697 9 C 0.148 3.852 10 C 0.050 3.950 11 C -0.121 4.121 12 C -0.121 4.121 13 C -0.530 4.530 14 H 0.040 0.960 15 C 0.032 3.968 16 N -0.896 5.896 17 Si 0.939 3.061 18 H -0.280 1.280 19 H -0.283 1.283 20 H -0.279 1.279 21 N -0.715 5.715 22 C 0.692 3.308 23 O -0.635 6.635 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.145 0.855 28 H 0.086 0.914 29 H 0.415 0.585 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.015 0.985 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.047 0.953 38 H 0.260 0.740 39 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 -4.151 10.957 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.375 5.375 3 C -0.019 4.019 4 C 0.001 3.999 5 H 0.181 0.819 6 C 0.279 3.721 7 O -0.464 6.464 8 N -0.349 5.349 9 C 0.024 3.976 10 C 0.050 3.950 11 C -0.179 4.179 12 C -0.179 4.179 13 C -0.568 4.568 14 H 0.059 0.941 15 C -0.168 4.168 16 N -0.534 5.534 17 Si 0.766 3.234 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.204 1.204 21 N -0.375 5.375 22 C 0.392 3.608 23 O -0.518 6.518 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.131 0.869 27 H 0.162 0.838 28 H 0.104 0.896 29 H 0.254 0.746 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -10.328 -5.008 10.347 15.453 hybrid contribution 1.199 0.299 -1.177 1.706 sum -9.129 -4.709 9.170 13.770 Atomic orbital electron populations 1.21613 0.74002 1.04552 1.02363 1.47219 1.07411 1.05493 1.77423 1.22627 0.84482 0.88207 1.06535 1.22123 0.98303 0.81862 0.97634 0.81928 1.21388 0.79342 0.81879 0.89491 1.90722 1.60956 1.54325 1.40410 1.46037 1.54350 1.14700 1.19845 1.21266 0.93781 0.96680 0.85859 1.18373 0.93313 0.88854 0.94509 1.21675 0.98148 1.01755 0.96326 1.21667 0.96260 1.02232 0.97704 1.21289 1.35089 0.99092 1.01353 0.94124 1.25365 0.96629 0.96669 0.98166 1.69886 1.45561 1.07357 1.30619 0.85865 0.78673 0.77864 0.81006 1.20609 1.20886 1.20375 1.44879 1.06363 1.07493 1.78726 1.16155 0.82498 0.84753 0.77424 1.90900 1.76872 1.23044 1.60937 0.92888 0.91376 0.86936 0.83763 0.89580 0.74645 0.94471 0.94513 0.93552 0.92089 0.96571 0.92128 0.96455 0.93390 0.93068 0.72433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.74 11.03 127.77 1.41 3.15 16 2 N -0.64 -13.16 3.36 -863.46 -2.90 -16.06 16 3 C 0.10 1.49 7.32 86.65 0.63 2.12 16 4 C 0.11 1.98 4.17 44.51 0.19 2.17 16 5 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 6 C 0.49 13.75 6.95 87.66 0.61 14.36 16 7 O -0.58 -22.74 16.56 -3.04 -0.05 -22.79 16 8 N -0.70 -19.23 4.96 -463.05 -2.30 -21.53 16 9 C 0.15 5.67 4.50 86.38 0.39 6.06 16 10 C 0.05 2.12 0.50 -52.93 -0.03 2.09 16 11 C -0.12 -4.84 8.08 71.98 0.58 -4.26 16 12 C -0.12 -4.77 8.08 71.98 0.58 -4.19 16 13 C -0.53 -26.75 8.01 25.60 0.21 -26.55 16 14 H 0.04 2.13 7.74 -2.91 -0.02 2.10 16 15 C 0.03 1.61 5.15 84.66 0.44 2.04 16 16 N -0.90 -45.52 9.35 21.45 0.20 -45.32 16 17 Si 0.94 41.38 29.54 68.60 2.03 43.40 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 N -0.71 -17.15 5.60 -460.34 -2.58 -19.73 16 22 C 0.69 19.80 8.60 179.57 1.54 21.34 16 23 O -0.64 -23.72 17.53 -4.00 -0.07 -23.79 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 1.17 7.91 -2.39 -0.02 1.15 16 26 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.33 7.72 -2.39 -0.02 1.31 16 29 H 0.42 8.79 6.16 -92.71 -0.57 8.22 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.44 6.86 -2.39 -0.02 1.42 16 33 H 0.06 2.78 6.07 -2.39 -0.01 2.77 16 34 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.06 2.74 6.07 -2.39 -0.01 2.73 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 1.45 6.86 -2.39 -0.02 1.44 16 38 H 0.26 12.80 8.31 -92.71 -0.77 12.03 16 39 H 0.43 10.07 8.96 -92.71 -0.83 9.24 16 Total: -1.00 -72.25 318.43 0.55 -71.70 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -0.33 Total: 15.78 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.55 Total: 18.34 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -7.57 Total: -102.64 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.12 Total: -46.58 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -72.25 0.55 -71.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597760979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.455 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds