Wall clock time and date at job start Mon Mar 30 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.50703 * 110.45534 * 59.29855 * 4 3 2 6 6 O 1.21284 * 119.99842 * 120.70387 * 5 4 3 7 7 N 1.34775 * 120.00233 * 300.69706 * 5 4 3 8 8 C 1.47068 * 136.05374 * 359.63430 * 7 5 4 9 9 C 1.53236 * 88.07888 * 207.20035 * 8 7 5 10 10 C 1.50702 * 114.32397 * 220.46987 * 9 8 7 11 11 H 1.08002 * 120.00164 * 93.76400 * 10 9 8 12 12 C 1.37881 * 119.99975 * 273.75977 * 10 9 8 13 13 N 1.31515 * 120.00148 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47236 * 120.00203 * 14 12 10 17 17 H 1.48504 * 109.46928 * 240.00110 * 14 12 10 18 18 C 1.47064 * 136.05929 * 180.02562 * 7 5 4 19 19 C 1.54516 * 110.51192 * 181.90123 * 4 3 2 20 20 C 1.54478 * 104.06134 * 118.64529 * 19 4 3 21 21 O 1.44424 * 104.80358 * 23.98159 * 20 19 4 22 22 C 1.44643 * 105.36866 * 319.56406 * 21 20 19 23 23 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 24 24 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 26 26 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 27 27 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 28 28 H 1.09000 * 113.46649 * 321.93350 * 8 7 5 29 29 H 1.08995 * 113.46664 * 92.37341 * 8 7 5 30 30 H 1.08996 * 114.01803 * 87.71695 * 9 8 7 31 31 H 0.96995 * 120.00176 * 179.97438 * 13 12 10 32 32 H 1.09009 * 113.46431 * 267.62869 * 18 7 5 33 33 H 1.08997 * 113.46838 * 38.05868 * 18 7 5 34 34 H 1.08998 * 110.51312 * 237.29057 * 19 4 3 35 35 H 1.09001 * 110.50520 * 359.86577 * 19 4 3 36 36 H 1.08998 * 110.37210 * 142.81362 * 20 19 4 37 37 H 1.08999 * 110.37145 * 265.04238 * 20 19 4 38 38 H 1.08999 * 110.34066 * 281.59417 * 22 21 20 39 39 H 1.09007 * 110.50811 * 159.18717 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0040 0.4242 -1.2131 6 8 4.7625 0.9480 -2.0014 7 7 3.5804 -0.8380 -1.4226 8 6 2.7010 -1.7891 -0.7263 9 6 3.5085 -2.9240 -1.3650 10 6 2.6759 -4.0859 -1.8423 11 1 2.3395 -4.1240 -2.8679 12 6 2.3436 -5.1005 -0.9697 13 7 2.7538 -5.0544 0.2791 14 14 1.3122 -6.5410 -1.5615 15 1 0.9816 -6.3563 -2.9974 16 1 2.0769 -7.8020 -1.3874 17 1 0.0575 -6.6097 -0.7700 18 6 3.7995 -1.8727 -2.4445 19 6 4.1894 2.5838 0.0487 20 6 4.9951 2.5765 1.3667 21 8 5.2497 1.1806 1.6358 22 6 4.0233 0.4943 1.2936 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 2.7928 -1.7504 0.3592 29 1 1.6653 -1.7498 -1.0639 30 1 4.3827 -3.2256 -0.7881 31 1 2.5197 -5.7680 0.8930 32 1 3.0596 -1.8559 -3.2448 33 1 4.8234 -1.9049 -2.8170 34 1 4.8534 2.7245 -0.8041 35 1 3.4260 3.3615 0.0696 36 1 5.9337 3.1160 1.2406 37 1 4.4090 3.0191 2.1721 38 1 3.2874 0.6144 2.0886 39 1 4.2156 -0.5628 1.1099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598021694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:34 Heat of formation + Delta-G solvation = -79.179525 kcal Electronic energy + Delta-G solvation = -22218.052543 eV Core-core repulsion = 18934.770809 eV Total energy + Delta-G solvation = -3283.281735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50794 -38.51370 -37.47305 -36.80833 -32.90285 -32.59300 -29.99754 -28.57750 -26.91582 -25.33498 -25.19466 -24.56800 -22.94467 -21.73148 -19.85077 -17.86864 -17.18221 -16.60159 -16.24577 -16.05364 -15.68791 -15.56785 -14.91720 -14.64195 -14.48312 -14.21280 -13.71673 -13.15231 -12.79375 -12.58368 -12.31871 -12.06709 -11.73621 -11.46698 -11.35467 -11.27894 -11.23482 -10.99776 -10.83040 -10.70605 -10.60489 -10.21092 -9.83403 -9.59213 -9.41703 -9.05065 -8.84061 -8.49642 -7.69975 -6.12478 -4.16797 3.13185 3.24647 3.33771 3.37053 3.62116 3.78022 4.09022 4.36923 4.56627 4.77303 4.97206 5.08705 5.12403 5.18656 5.22528 5.33637 5.44851 5.46921 5.58258 5.68410 5.70764 5.80990 5.88888 6.03443 6.15993 6.20379 6.33826 6.37854 6.54150 6.82254 6.86446 6.90729 7.07073 7.20678 7.64622 7.86328 8.26766 8.63877 8.85473 8.86731 9.48633 10.97344 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.005842 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.976905 B = 4791.964015 C = 4999.867318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.074 3.926 4 C -0.106 4.106 5 C 0.549 3.451 6 O -0.568 6.568 7 N -0.629 5.629 8 C 0.133 3.867 9 C 0.024 3.976 10 C -0.512 4.512 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.884 5.884 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.100 3.900 19 C -0.141 4.141 20 C 0.047 3.953 21 O -0.372 6.372 22 C 0.065 3.935 23 H 0.037 0.963 24 H 0.093 0.907 25 H 0.037 0.963 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.262 0.738 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 12.720 3.086 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.282 6.282 3 C -0.003 4.003 4 C -0.109 4.109 5 C 0.337 3.663 6 O -0.449 6.449 7 N -0.361 5.361 8 C 0.011 3.989 9 C 0.004 3.996 10 C -0.551 4.551 11 H 0.080 0.920 12 C -0.135 4.135 13 N -0.521 5.521 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.023 4.023 19 C -0.178 4.178 20 C -0.030 4.030 21 O -0.290 6.290 22 C -0.012 4.012 23 H 0.056 0.944 24 H 0.111 0.889 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.136 12.826 2.969 13.534 hybrid contribution -1.190 -0.357 -0.264 1.270 sum -4.325 12.469 2.705 13.473 Atomic orbital electron populations 1.22725 0.81466 1.03405 0.99264 1.88446 1.19460 1.25138 1.95179 1.22438 0.90700 0.86676 1.00461 1.22095 0.95322 0.96870 0.96613 1.19347 0.80925 0.79986 0.86060 1.90589 1.38126 1.67924 1.48275 1.49877 1.46803 1.10865 1.28532 1.23374 0.94452 0.84060 0.97033 1.20445 0.96520 0.90740 0.91847 1.20920 1.32695 1.04579 0.96867 0.91976 1.25006 0.95739 0.97867 0.94880 1.69967 1.44877 1.33339 1.03968 0.86531 0.80013 0.82428 0.78989 1.19654 1.20943 1.20993 1.23330 0.99753 0.85365 0.93807 1.22977 1.00314 0.93949 1.00607 1.23389 1.00209 0.84307 0.95097 1.89195 1.34397 1.18253 1.87152 1.23533 0.86472 0.98406 0.92790 0.94428 0.88898 0.94427 0.92935 0.92530 0.92210 0.90371 0.91675 0.92803 0.91102 0.92730 0.87832 0.90240 0.88976 0.92434 0.91277 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.64 101.05 1.08 1.41 16 2 O -0.36 -5.58 5.07 -35.23 -0.18 -5.76 16 3 C 0.07 1.01 4.54 37.16 0.17 1.18 16 4 C -0.11 -1.68 0.70 -154.09 -0.11 -1.79 16 5 C 0.55 11.20 6.72 -10.98 -0.07 11.13 16 6 O -0.57 -13.11 16.06 5.55 0.09 -13.02 16 7 N -0.63 -13.27 3.39 -185.41 -0.63 -13.90 16 8 C 0.13 2.83 4.73 -8.64 -0.04 2.79 16 9 C 0.02 0.57 3.77 -91.41 -0.34 0.22 16 10 C -0.51 -13.12 8.83 -34.44 -0.30 -13.42 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.88 -24.11 13.26 55.43 0.74 -23.38 16 14 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 C 0.10 2.16 8.18 -8.52 -0.07 2.09 16 19 C -0.14 -1.89 6.32 -25.16 -0.16 -2.05 16 20 C 0.05 0.59 7.64 37.93 0.29 0.88 16 21 O -0.37 -6.20 11.65 -35.23 -0.41 -6.61 16 22 C 0.06 1.05 6.16 37.93 0.23 1.29 16 23 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 28 H 0.06 1.30 6.18 -51.93 -0.32 0.98 16 29 H 0.08 1.67 6.65 -51.93 -0.35 1.32 16 30 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.07 1.48 8.10 -51.92 -0.42 1.06 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 1.61 6.50 -51.93 -0.34 1.27 16 35 H 0.08 0.82 7.73 -51.93 -0.40 0.42 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 39 H 0.11 1.99 6.15 -51.92 -0.32 1.67 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -30.18 312.50 -6.03 -36.21 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.90 Total: 1.31 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 0.57 Total: 5.42 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.11 Total: -37.28 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.50 Total: -25.40 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.18 -6.03 -36.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598021694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.966 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds