Wall clock time and date at job start Mon Mar 30 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.50703 * 110.45534 * 59.29855 * 4 3 2 6 6 O 1.21284 * 119.99842 * 120.70387 * 5 4 3 7 7 N 1.34775 * 120.00233 * 300.69706 * 5 4 3 8 8 C 1.47068 * 136.05374 * 359.63430 * 7 5 4 9 9 C 1.53236 * 88.07888 * 207.20035 * 8 7 5 10 10 C 1.50702 * 114.32397 * 220.46987 * 9 8 7 11 11 H 1.08002 * 120.00164 * 93.76400 * 10 9 8 12 12 C 1.37881 * 119.99975 * 273.75977 * 10 9 8 13 13 N 1.31515 * 120.00148 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47236 * 120.00203 * 14 12 10 17 17 H 1.48504 * 109.46928 * 240.00110 * 14 12 10 18 18 C 1.47064 * 136.05929 * 180.02562 * 7 5 4 19 19 C 1.54516 * 110.51192 * 181.90123 * 4 3 2 20 20 C 1.54478 * 104.06134 * 118.64529 * 19 4 3 21 21 O 1.44424 * 104.80358 * 23.98159 * 20 19 4 22 22 C 1.44643 * 105.36866 * 319.56406 * 21 20 19 23 23 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 24 24 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 26 26 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 27 27 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 28 28 H 1.09000 * 113.46649 * 321.93350 * 8 7 5 29 29 H 1.08995 * 113.46664 * 92.37341 * 8 7 5 30 30 H 1.08996 * 114.01803 * 87.71695 * 9 8 7 31 31 H 0.96995 * 120.00176 * 179.97438 * 13 12 10 32 32 H 1.09009 * 113.46431 * 267.62869 * 18 7 5 33 33 H 1.08997 * 113.46838 * 38.05868 * 18 7 5 34 34 H 1.08998 * 110.51312 * 237.29057 * 19 4 3 35 35 H 1.09001 * 110.50520 * 359.86577 * 19 4 3 36 36 H 1.08998 * 110.37210 * 142.81362 * 20 19 4 37 37 H 1.08999 * 110.37145 * 265.04238 * 20 19 4 38 38 H 1.08999 * 110.34066 * 281.59417 * 22 21 20 39 39 H 1.09007 * 110.50811 * 159.18717 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0040 0.4242 -1.2131 6 8 4.7625 0.9480 -2.0014 7 7 3.5804 -0.8380 -1.4226 8 6 2.7010 -1.7891 -0.7263 9 6 3.5085 -2.9240 -1.3650 10 6 2.6759 -4.0859 -1.8423 11 1 2.3395 -4.1240 -2.8679 12 6 2.3436 -5.1005 -0.9697 13 7 2.7538 -5.0544 0.2791 14 14 1.3122 -6.5410 -1.5615 15 1 0.9816 -6.3563 -2.9974 16 1 2.0769 -7.8020 -1.3874 17 1 0.0575 -6.6097 -0.7700 18 6 3.7995 -1.8727 -2.4445 19 6 4.1894 2.5838 0.0487 20 6 4.9951 2.5765 1.3667 21 8 5.2497 1.1806 1.6358 22 6 4.0233 0.4943 1.2936 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 2.7928 -1.7504 0.3592 29 1 1.6653 -1.7498 -1.0639 30 1 4.3827 -3.2256 -0.7881 31 1 2.5197 -5.7680 0.8930 32 1 3.0596 -1.8559 -3.2448 33 1 4.8234 -1.9049 -2.8170 34 1 4.8534 2.7245 -0.8041 35 1 3.4260 3.3615 0.0696 36 1 5.9337 3.1160 1.2406 37 1 4.4090 3.0191 2.1721 38 1 3.2874 0.6144 2.0886 39 1 4.2156 -0.5628 1.1099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598021694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:33 Heat of formation + Delta-G solvation = -99.797588 kcal Electronic energy + Delta-G solvation = -22218.946609 eV Core-core repulsion = 18934.770809 eV Total energy + Delta-G solvation = -3284.175801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90808 -40.03996 -38.63754 -38.40923 -34.61799 -34.09474 -31.35911 -30.09402 -27.94821 -27.07744 -26.76697 -25.95553 -24.16594 -23.12071 -21.49165 -19.39755 -18.82256 -18.17353 -17.68194 -17.28898 -16.84905 -16.79135 -16.47950 -16.05897 -15.91139 -15.79888 -14.99410 -14.70538 -14.33796 -14.00844 -13.70640 -13.35422 -13.15925 -13.04529 -12.92959 -12.73433 -12.51176 -12.47192 -12.33463 -12.13833 -11.97197 -11.79076 -11.36272 -10.93278 -10.91383 -10.71104 -10.46294 -10.38822 -9.45181 -8.12003 -6.22582 1.47287 1.50561 1.57491 1.61504 2.04127 2.48750 2.68595 2.97328 3.17902 3.41880 3.47863 3.77507 3.95703 4.11510 4.26242 4.29918 4.34790 4.46800 4.49606 4.52262 4.56982 4.62638 4.64765 4.69430 4.73051 4.79119 4.84504 4.96589 5.07826 5.10539 5.20115 5.27962 5.64829 5.74387 5.86424 6.23180 6.29029 6.84762 6.97899 7.18528 7.46233 8.98352 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.005842 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.976905 B = 4791.964015 C = 4999.867318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.077 3.923 4 C -0.104 4.104 5 C 0.539 3.461 6 O -0.600 6.600 7 N -0.632 5.632 8 C 0.162 3.838 9 C 0.010 3.990 10 C -0.523 4.523 11 H 0.065 0.935 12 C 0.022 3.978 13 N -0.917 5.917 14 Si 0.958 3.042 15 H -0.265 1.265 16 H -0.285 1.285 17 H -0.278 1.278 18 C 0.103 3.897 19 C -0.135 4.135 20 C 0.044 3.956 21 O -0.402 6.402 22 C 0.069 3.931 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 14.252 3.644 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.001 3.999 4 C -0.108 4.108 5 C 0.330 3.670 6 O -0.484 6.484 7 N -0.363 5.363 8 C 0.040 3.960 9 C -0.010 4.010 10 C -0.562 4.562 11 H 0.083 0.917 12 C -0.178 4.178 13 N -0.556 5.556 14 Si 0.784 3.216 15 H -0.189 1.189 16 H -0.211 1.211 17 H -0.203 1.203 18 C -0.020 4.020 19 C -0.173 4.173 20 C -0.032 4.032 21 O -0.322 6.322 22 C -0.008 4.008 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.974 14.375 3.523 15.614 hybrid contribution -0.539 -0.790 -0.458 1.060 sum -5.513 13.585 3.065 14.978 Atomic orbital electron populations 1.22824 0.79841 1.03323 1.00980 1.88344 1.21272 1.26540 1.95494 1.22537 0.88487 0.86320 1.02604 1.22205 0.97459 0.97374 0.93718 1.20286 0.80012 0.79566 0.87172 1.90567 1.39370 1.68511 1.49905 1.49902 1.46906 1.11389 1.28099 1.22953 0.94082 0.82641 0.96304 1.20350 0.95865 0.91742 0.93007 1.21174 1.32663 1.05303 0.97010 0.91731 1.25742 0.96835 1.00337 0.94903 1.70083 1.46155 1.34265 1.05065 0.85506 0.78421 0.78903 0.78792 1.18886 1.21142 1.20334 1.23215 0.99796 0.85207 0.93766 1.22997 1.00844 0.93370 1.00069 1.23681 1.01467 0.82407 0.95670 1.89162 1.35004 1.20651 1.87346 1.23442 0.87002 0.96531 0.93803 0.93448 0.89974 0.91896 0.92279 0.88643 0.92896 0.89903 0.95153 0.92743 0.89946 0.93258 0.90433 0.86277 0.87839 0.88871 0.88558 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.64 113.37 1.21 1.77 16 2 O -0.40 -11.43 5.07 -148.98 -0.76 -12.19 16 3 C 0.08 1.85 4.54 71.98 0.33 2.18 16 4 C -0.10 -3.15 0.70 -51.91 -0.04 -3.19 16 5 C 0.54 22.08 6.72 87.66 0.59 22.67 16 6 O -0.60 -28.08 16.06 -3.04 -0.05 -28.13 16 7 N -0.63 -27.08 3.39 -858.90 -2.91 -29.99 16 8 C 0.16 7.04 4.73 83.09 0.39 7.43 16 9 C 0.01 0.48 3.77 -11.30 -0.04 0.44 16 10 C -0.52 -27.15 8.83 25.60 0.23 -26.92 16 11 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 12 C 0.02 1.15 5.46 84.66 0.46 1.61 16 13 N -0.92 -50.91 13.26 21.45 0.28 -50.63 16 14 Si 0.96 41.09 29.54 68.60 2.03 43.12 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 18 C 0.10 4.57 8.18 83.17 0.68 5.25 16 19 C -0.14 -3.27 6.32 31.61 0.20 -3.07 16 20 C 0.04 0.97 7.64 72.48 0.55 1.52 16 21 O -0.40 -13.01 11.65 -148.98 -1.74 -14.75 16 22 C 0.07 2.18 6.16 72.48 0.45 2.62 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.10 1.58 8.12 -2.39 -0.02 1.57 16 28 H 0.05 2.37 6.18 -2.39 -0.01 2.35 16 29 H 0.08 3.53 6.65 -2.39 -0.02 3.52 16 30 H 0.03 1.69 8.11 -2.39 -0.02 1.68 16 31 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.08 3.46 8.10 -2.38 -0.02 3.44 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.33 6.50 -2.39 -0.02 2.31 16 35 H 0.12 1.92 7.73 -2.39 -0.02 1.90 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 2.47 7.85 -2.39 -0.02 2.46 16 39 H 0.07 2.68 6.15 -2.38 -0.01 2.67 16 Total: -1.00 -66.80 312.50 2.90 -63.90 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.04 Total: 16.34 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 5.01 Total: 12.33 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.62 Total: -80.62 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -2.54 Total: -55.07 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -66.80 2.90 -63.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598021694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.896 kcal (2) G-P(sol) polarization free energy of solvation -66.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds