Wall clock time and date at job start Mon Mar 30 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46911 * 2 1 4 4 C 1.52998 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.46968 * 305.00245 * 4 3 2 6 6 N 1.46503 * 109.47081 * 64.99923 * 4 3 2 7 7 C 1.34774 * 119.99678 * 60.00225 * 6 4 3 8 8 N 1.34778 * 119.99739 * 180.02562 * 7 6 4 9 9 O 1.21586 * 120.00292 * 359.97438 * 7 6 4 10 10 C 1.50700 * 109.47111 * 185.00303 * 4 3 2 11 11 O 1.21286 * 119.99450 * 259.99689 * 10 4 3 12 12 N 1.34772 * 120.00116 * 80.00203 * 10 4 3 13 13 C 1.47066 * 136.05397 * 179.97438 * 12 10 4 14 14 C 1.53503 * 87.98596 * 152.84244 * 13 12 10 15 15 C 1.50701 * 114.20491 * 139.65156 * 14 13 12 16 16 H 1.07990 * 120.00399 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99442 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99605 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47160 * 59.99885 * 19 17 15 21 21 H 1.48505 * 109.46723 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47020 * 299.99125 * 19 17 15 23 23 C 1.47060 * 136.06000 * 359.94777 * 12 10 4 24 24 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47522 * 300.00429 * 1 2 3 26 26 H 1.09008 * 109.46755 * 60.00317 * 1 2 3 27 27 H 1.08994 * 109.47127 * 239.99939 * 2 1 3 28 28 H 1.08999 * 109.46528 * 119.99625 * 2 1 3 29 29 H 1.09001 * 109.46952 * 59.99956 * 3 2 1 30 30 H 1.08995 * 109.47122 * 299.99692 * 3 2 1 31 31 H 0.96991 * 119.99974 * 240.00038 * 6 4 3 32 32 H 0.96994 * 120.00374 * 359.97438 * 8 7 6 33 33 H 0.97004 * 119.99768 * 180.02562 * 8 7 6 34 34 H 1.09000 * 113.46827 * 267.61848 * 13 12 10 35 35 H 1.09003 * 113.47151 * 38.06638 * 13 12 10 36 36 H 1.08995 * 114.20536 * 272.48261 * 14 13 12 37 37 H 0.97003 * 119.99434 * 180.02562 * 18 17 15 38 38 H 1.09007 * 113.46761 * 321.93701 * 23 12 10 39 39 H 1.09003 * 113.46830 * 92.37669 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0588 0.8587 -1.2509 7 6 3.7337 1.4239 -2.4304 8 7 4.1830 0.8865 -3.5818 9 8 3.0343 2.4182 -2.4558 10 6 4.0722 2.8581 0.1246 11 8 4.4467 3.4570 -0.8613 12 7 4.1052 3.4582 1.3308 13 6 4.5099 4.7741 1.8481 14 6 3.5036 4.5744 2.9899 15 6 3.9962 5.0395 4.3361 16 1 4.9822 5.4697 4.4311 17 6 3.1880 4.9158 5.4463 18 7 1.9871 4.3923 5.3304 19 14 3.7983 5.4930 7.1147 20 1 4.1054 6.9446 7.0545 21 1 2.7481 5.2516 8.1365 22 1 5.0263 4.7418 7.4796 23 6 3.7521 3.0857 2.7089 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.6165 0.0654 -1.2306 32 1 4.7407 0.0931 -3.5616 33 1 3.9493 1.2935 -4.4307 34 1 5.5463 4.8085 2.1840 35 1 4.2540 5.5993 1.1834 36 1 2.4928 4.9105 2.7587 37 1 1.4184 4.3057 6.1114 38 1 2.8517 2.4749 2.7764 39 1 4.5868 2.6707 3.2739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:37 Heat of formation + Delta-G solvation = -37.533097 kcal Electronic energy + Delta-G solvation = -21350.950939 eV Core-core repulsion = 18101.767880 eV Total energy + Delta-G solvation = -3249.183059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28471 -38.90913 -36.92743 -35.54599 -33.70335 -32.80080 -32.64911 -29.83069 -28.17366 -25.39571 -24.89706 -23.90380 -21.79055 -20.78470 -19.93333 -18.54017 -17.99631 -17.12255 -16.76270 -16.03194 -15.64288 -14.96282 -14.71304 -14.51733 -14.38874 -13.94198 -13.85874 -13.42740 -12.93577 -12.55934 -12.28223 -12.04991 -11.66554 -11.47365 -11.31358 -11.09019 -10.97819 -10.88837 -10.80795 -10.61947 -10.32076 -9.85986 -9.55016 -9.42557 -9.27509 -9.13497 -8.59070 -8.45237 -7.72045 -6.15798 -4.21244 2.89381 3.26446 3.31971 3.32758 3.37110 3.50306 3.78750 4.34944 4.58082 4.92198 5.09220 5.10004 5.14571 5.27610 5.33136 5.69279 5.83099 5.93422 5.97799 6.09820 6.22117 6.25156 6.29904 6.32551 6.46329 6.53449 6.57279 6.63728 6.77136 6.80008 6.89644 7.03819 7.59499 7.82379 8.11863 8.21932 8.65386 8.82379 8.85574 8.99485 9.45297 10.93819 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025953 B = 0.004771 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.600756 B = 5867.398410 C = 6627.483894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.134 4.134 4 C 0.161 3.839 5 H 0.104 0.896 6 N -0.733 5.733 7 C 0.709 3.291 8 N -0.874 5.874 9 O -0.560 6.560 10 C 0.520 3.480 11 O -0.532 6.532 12 N -0.647 5.647 13 C 0.101 3.899 14 C 0.035 3.965 15 C -0.517 4.517 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.097 3.903 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.395 0.605 32 H 0.390 0.610 33 H 0.411 0.589 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.264 0.736 38 H 0.059 0.941 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -12.644 -10.141 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.173 4.173 4 C 0.051 3.949 5 H 0.122 0.878 6 N -0.389 5.389 7 C 0.408 3.592 8 N -0.443 5.443 9 O -0.434 6.434 10 C 0.306 3.694 11 O -0.409 6.409 12 N -0.382 5.382 13 C -0.021 4.021 14 C 0.016 3.984 15 C -0.555 4.555 16 H 0.080 0.920 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.026 4.026 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.228 0.772 32 H 0.217 0.783 33 H 0.242 0.758 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.458 -11.606 -10.621 15.799 hybrid contribution 0.860 -0.474 0.687 1.198 sum 2.318 -12.080 -9.934 15.810 Atomic orbital electron populations 1.21748 0.95773 1.01164 1.02188 1.21441 0.96019 0.96352 1.01414 1.21998 0.92322 0.97863 1.05090 1.20621 0.95864 0.92712 0.85674 0.87820 1.44710 1.57269 1.32480 1.04431 1.15846 0.80500 0.82408 0.80494 1.42978 1.59066 1.34490 1.07768 1.90975 1.41541 1.25174 1.85735 1.20288 0.79072 0.88078 0.81918 1.90691 1.48658 1.65483 1.36046 1.49956 1.63526 1.18388 1.06344 1.23290 1.00061 0.83992 0.94773 1.20334 0.95371 0.90283 0.92384 1.20882 1.01530 1.41716 0.91420 0.91957 1.25016 0.94614 0.94526 0.99282 1.69946 1.08255 1.43629 1.30409 0.86613 0.78459 0.79451 0.83237 1.20077 1.21242 1.20110 1.23600 0.98597 1.02851 0.77537 0.93065 0.92323 0.92863 0.92432 0.92153 0.90185 0.88962 0.77164 0.78266 0.75754 0.91159 0.92659 0.91390 0.92616 0.92227 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.11 -1.37 5.82 -26.73 -0.16 -1.52 16 3 C -0.13 -2.06 4.54 -26.73 -0.12 -2.18 16 4 C 0.16 2.48 2.84 -69.08 -0.20 2.29 16 5 H 0.10 1.35 8.14 -51.92 -0.42 0.93 16 6 N -0.73 -9.52 4.66 -59.81 -0.28 -9.80 16 7 C 0.71 10.85 7.59 -86.92 -0.66 10.19 16 8 N -0.87 -8.77 8.88 27.63 0.25 -8.52 16 9 O -0.56 -11.61 13.03 -18.20 -0.24 -11.84 16 10 C 0.52 10.67 7.06 -10.99 -0.08 10.59 16 11 O -0.53 -12.88 14.45 -17.93 -0.26 -13.14 16 12 N -0.65 -13.50 3.69 -185.21 -0.68 -14.18 16 13 C 0.10 2.20 8.18 -8.51 -0.07 2.13 16 14 C 0.04 0.84 3.79 -91.24 -0.35 0.50 16 15 C -0.52 -13.20 8.82 -34.44 -0.30 -13.50 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -23.99 13.26 55.43 0.74 -23.26 16 19 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 C 0.10 2.01 7.99 -8.50 -0.07 1.94 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.33 7.70 -51.93 -0.40 0.93 16 30 H 0.09 1.69 6.04 -51.93 -0.31 1.37 16 31 H 0.40 3.50 8.84 -40.82 -0.36 3.14 16 32 H 0.39 2.44 8.84 -40.82 -0.36 2.08 16 33 H 0.41 3.79 8.93 -40.82 -0.36 3.43 16 34 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.78 8.11 -51.93 -0.42 1.36 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.06 1.21 7.70 -51.93 -0.40 0.81 16 39 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -33.65 325.92 -8.26 -41.91 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.95 Total: 8.18 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -1.73 Total: 10.76 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.02 Total: -55.77 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.50 Total: -24.98 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.65 -8.26 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.376 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds