Wall clock time and date at job start Mon Mar 30 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46911 * 2 1 4 4 C 1.52998 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.46968 * 305.00245 * 4 3 2 6 6 N 1.46503 * 109.47081 * 64.99923 * 4 3 2 7 7 C 1.34774 * 119.99678 * 60.00225 * 6 4 3 8 8 N 1.34778 * 119.99739 * 180.02562 * 7 6 4 9 9 O 1.21586 * 120.00292 * 359.97438 * 7 6 4 10 10 C 1.50700 * 109.47111 * 185.00303 * 4 3 2 11 11 O 1.21286 * 119.99450 * 259.99689 * 10 4 3 12 12 N 1.34772 * 120.00116 * 80.00203 * 10 4 3 13 13 C 1.47066 * 136.05397 * 179.97438 * 12 10 4 14 14 C 1.53503 * 87.98596 * 152.84244 * 13 12 10 15 15 C 1.50701 * 114.20491 * 139.65156 * 14 13 12 16 16 H 1.07990 * 120.00399 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99442 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99605 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47160 * 59.99885 * 19 17 15 21 21 H 1.48505 * 109.46723 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47020 * 299.99125 * 19 17 15 23 23 C 1.47060 * 136.06000 * 359.94777 * 12 10 4 24 24 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47522 * 300.00429 * 1 2 3 26 26 H 1.09008 * 109.46755 * 60.00317 * 1 2 3 27 27 H 1.08994 * 109.47127 * 239.99939 * 2 1 3 28 28 H 1.08999 * 109.46528 * 119.99625 * 2 1 3 29 29 H 1.09001 * 109.46952 * 59.99956 * 3 2 1 30 30 H 1.08995 * 109.47122 * 299.99692 * 3 2 1 31 31 H 0.96991 * 119.99974 * 240.00038 * 6 4 3 32 32 H 0.96994 * 120.00374 * 359.97438 * 8 7 6 33 33 H 0.97004 * 119.99768 * 180.02562 * 8 7 6 34 34 H 1.09000 * 113.46827 * 267.61848 * 13 12 10 35 35 H 1.09003 * 113.47151 * 38.06638 * 13 12 10 36 36 H 1.08995 * 114.20536 * 272.48261 * 14 13 12 37 37 H 0.97003 * 119.99434 * 180.02562 * 18 17 15 38 38 H 1.09007 * 113.46761 * 321.93701 * 23 12 10 39 39 H 1.09003 * 113.46830 * 92.37669 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8532 0.8427 6 7 4.0588 0.8587 -1.2509 7 6 3.7337 1.4239 -2.4304 8 7 4.1830 0.8865 -3.5818 9 8 3.0343 2.4182 -2.4558 10 6 4.0722 2.8581 0.1246 11 8 4.4467 3.4570 -0.8613 12 7 4.1052 3.4582 1.3308 13 6 4.5099 4.7741 1.8481 14 6 3.5036 4.5744 2.9899 15 6 3.9962 5.0395 4.3361 16 1 4.9822 5.4697 4.4311 17 6 3.1880 4.9158 5.4463 18 7 1.9871 4.3923 5.3304 19 14 3.7983 5.4930 7.1147 20 1 4.1054 6.9446 7.0545 21 1 2.7481 5.2516 8.1365 22 1 5.0263 4.7418 7.4796 23 6 3.7521 3.0857 2.7089 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 4.6165 0.0654 -1.2306 32 1 4.7407 0.0931 -3.5616 33 1 3.9493 1.2935 -4.4307 34 1 5.5463 4.8085 2.1840 35 1 4.2540 5.5993 1.1834 36 1 2.4928 4.9105 2.7587 37 1 1.4184 4.3057 6.1114 38 1 2.8517 2.4749 2.7764 39 1 4.5868 2.6707 3.2739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:37 Heat of formation + Delta-G solvation = -62.779954 kcal Electronic energy + Delta-G solvation = -21352.045724 eV Core-core repulsion = 18101.767880 eV Total energy + Delta-G solvation = -3250.277845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66721 -40.44048 -38.54944 -36.81982 -34.87804 -34.60960 -33.80604 -31.39355 -29.57311 -27.12961 -26.64041 -25.23848 -22.98693 -22.19821 -21.37309 -19.78435 -19.45791 -18.66025 -18.23115 -17.61398 -16.93046 -16.58119 -16.15551 -16.08471 -15.75861 -15.24312 -15.06873 -14.77220 -14.27212 -14.07197 -14.00447 -13.44189 -13.24069 -13.05651 -12.84765 -12.70372 -12.58654 -12.28154 -12.15634 -12.02317 -11.65482 -11.43548 -11.07212 -11.01479 -10.80502 -10.51579 -10.46030 -9.88635 -9.44579 -8.13158 -6.24599 1.50763 1.52055 1.59256 1.62149 1.84344 2.19156 2.45022 2.49897 3.16851 3.51489 3.68106 3.91438 3.98581 4.21064 4.26354 4.31230 4.44109 4.57822 4.64012 4.71439 4.74356 4.85398 4.95640 4.99800 5.02728 5.11340 5.22034 5.30460 5.44931 5.50365 5.62111 5.84082 5.98003 6.11611 6.26486 6.83279 6.99713 7.21625 7.27026 7.45293 7.85890 8.96519 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025953 B = 0.004771 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.600756 B = 5867.398410 C = 6627.483894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.127 4.127 4 C 0.169 3.831 5 H 0.139 0.861 6 N -0.717 5.717 7 C 0.700 3.300 8 N -0.851 5.851 9 O -0.620 6.620 10 C 0.510 3.490 11 O -0.572 6.572 12 N -0.647 5.647 13 C 0.104 3.896 14 C 0.022 3.978 15 C -0.529 4.529 16 H 0.066 0.934 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.958 3.042 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.116 3.884 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.419 0.581 32 H 0.412 0.588 33 H 0.417 0.583 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -14.986 -9.680 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.166 4.166 4 C 0.059 3.941 5 H 0.157 0.843 6 N -0.375 5.375 7 C 0.398 3.602 8 N -0.421 5.421 9 O -0.498 6.498 10 C 0.300 3.700 11 O -0.451 6.451 12 N -0.382 5.382 13 C -0.019 4.019 14 C 0.003 3.997 15 C -0.567 4.567 16 H 0.084 0.916 17 C -0.177 4.177 18 N -0.555 5.555 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.006 4.006 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.257 0.743 32 H 0.243 0.757 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.750 -14.027 -10.184 17.551 hybrid contribution 0.471 0.302 0.454 0.721 sum 3.221 -13.725 -9.730 17.129 Atomic orbital electron populations 1.21756 0.95662 1.02321 1.01206 1.21402 0.96074 0.93794 1.02997 1.21897 0.92297 0.99913 1.02489 1.20600 0.95739 0.89946 0.87851 0.84326 1.44480 1.57173 1.32826 1.03055 1.16189 0.80136 0.81969 0.81868 1.42710 1.58180 1.34707 1.06471 1.90950 1.44178 1.28000 1.86712 1.21315 0.78027 0.89906 0.80802 1.90669 1.50346 1.66986 1.37082 1.49995 1.63518 1.17925 1.06794 1.23196 1.00228 0.84572 0.93926 1.20210 0.94021 0.92813 0.92639 1.21160 1.01736 1.41660 0.92161 0.91611 1.25736 0.94682 0.94639 1.02621 1.70058 1.09320 1.44842 1.31283 0.85615 0.78140 0.78887 0.79023 1.20028 1.21250 1.18975 1.23347 0.99257 1.00675 0.77337 0.90770 0.93291 0.93970 0.91127 0.90069 0.92157 0.92263 0.74332 0.75694 0.75094 0.89731 0.93848 0.94881 0.92642 0.91742 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.91 71.98 0.71 -2.57 16 2 C -0.11 -2.27 5.82 30.60 0.18 -2.09 16 3 C -0.13 -3.85 4.54 30.59 0.14 -3.71 16 4 C 0.17 4.93 2.84 44.24 0.13 5.06 16 5 H 0.14 3.11 8.14 -2.38 -0.02 3.09 16 6 N -0.72 -17.04 4.66 -461.40 -2.15 -19.19 16 7 C 0.70 20.66 7.59 179.05 1.36 22.02 16 8 N -0.85 -15.34 8.88 -184.75 -1.64 -16.98 16 9 O -0.62 -26.13 13.03 18.47 0.24 -25.89 16 10 C 0.51 20.87 7.06 87.66 0.62 21.49 16 11 O -0.57 -28.03 14.45 19.41 0.28 -27.75 16 12 N -0.65 -26.97 3.69 -858.27 -3.17 -30.13 16 13 C 0.10 4.56 8.18 83.18 0.68 5.24 16 14 C 0.02 1.09 3.79 -11.20 -0.04 1.04 16 15 C -0.53 -26.96 8.82 25.60 0.23 -26.73 16 16 H 0.07 3.24 7.81 -2.92 -0.02 3.21 16 17 C 0.02 1.22 5.46 84.65 0.46 1.68 16 18 N -0.92 -50.00 13.26 21.45 0.28 -49.72 16 19 Si 0.96 40.57 29.54 68.60 2.03 42.59 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 C 0.12 4.75 7.99 83.19 0.66 5.42 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.07 1.36 7.75 -2.39 -0.02 1.34 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.04 7.70 -2.39 -0.02 2.02 16 30 H 0.06 2.23 6.04 -2.39 -0.01 2.21 16 31 H 0.42 5.88 8.84 -92.71 -0.82 5.06 16 32 H 0.41 3.86 8.84 -92.71 -0.82 3.04 16 33 H 0.42 7.03 8.93 -92.71 -0.83 6.20 16 34 H 0.08 3.46 8.10 -2.39 -0.02 3.45 16 35 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.03 1.81 8.11 -2.39 -0.02 1.79 16 37 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 38 H 0.06 2.57 7.70 -2.38 -0.02 2.56 16 39 H 0.09 3.33 8.10 -2.39 -0.02 3.31 16 Total: -1.00 -75.03 325.92 -0.38 -75.42 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -1.38 Total: 24.80 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 5.13 Total: 26.85 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -6.67 Total: -116.01 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: 0.52 Total: -53.64 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Total: -75.03 -0.38 -75.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.637 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds