Wall clock time and date at job start Mon Mar 30 2020 04:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 116.99992 * 2 1 4 4 O 1.20826 * 120.00485 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99892 * 180.02562 * 3 2 1 6 6 H 1.08998 * 112.85599 * 48.80256 * 5 3 2 7 7 C 1.53782 * 113.61335 * 179.97438 * 5 3 2 8 8 C 1.53782 * 87.08091 * 140.06583 * 7 5 3 9 9 H 1.08999 * 113.61495 * 89.20151 * 8 7 5 10 10 N 1.46507 * 113.61448 * 220.01926 * 8 7 5 11 11 C 1.46499 * 119.99848 * 62.07839 * 10 8 7 12 12 C 1.34773 * 120.00241 * 242.07971 * 10 8 7 13 13 O 1.21290 * 119.99510 * 5.19228 * 12 10 8 14 14 C 1.50693 * 120.00038 * 185.19746 * 12 10 8 15 15 H 1.08995 * 109.47383 * 312.01592 * 14 12 10 16 16 C 1.52999 * 109.47301 * 72.02347 * 14 12 10 17 17 C 1.50708 * 109.46845 * 192.01755 * 14 12 10 18 18 H 1.08001 * 120.00160 * 356.73827 * 17 14 12 19 19 C 1.37884 * 119.99664 * 176.72701 * 17 14 12 20 20 N 1.31515 * 119.99457 * 158.23660 * 19 17 14 21 21 Si 1.86799 * 120.00295 * 338.23349 * 19 17 14 22 22 H 1.48496 * 109.47291 * 272.77064 * 21 19 17 23 23 H 1.48504 * 109.46673 * 32.76777 * 21 19 17 24 24 H 1.48497 * 109.46842 * 152.76539 * 21 19 17 25 25 C 1.53782 * 87.17444 * 334.61047 * 8 7 5 26 26 H 1.08994 * 109.47281 * 59.99891 * 1 2 3 27 27 H 1.09003 * 109.47392 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47085 * 299.99849 * 1 2 3 29 29 H 1.09000 * 113.61404 * 25.51682 * 7 5 3 30 30 H 1.08993 * 113.61406 * 254.61037 * 7 5 3 31 31 H 1.09007 * 109.47084 * 215.08553 * 11 10 8 32 32 H 1.08999 * 109.47127 * 335.08436 * 11 10 8 33 33 H 1.08997 * 109.47465 * 95.08425 * 11 10 8 34 34 H 1.09002 * 109.47154 * 174.42280 * 16 14 12 35 35 H 1.09002 * 109.47164 * 294.42516 * 16 14 12 36 36 H 1.09002 * 109.47551 * 54.42558 * 16 14 12 37 37 H 0.97002 * 119.99484 * 180.02562 * 20 19 17 38 38 H 1.08993 * 113.61897 * 139.94507 * 25 8 7 39 39 H 1.09006 * 113.60965 * 270.84644 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0234 0.6364 -0.7567 7 6 4.1077 2.7141 -0.0011 8 6 5.1827 2.2265 0.9844 9 1 6.0823 1.8493 0.4979 10 7 5.4737 3.1824 2.0558 11 6 4.4221 3.5657 3.0010 12 6 6.7088 3.7093 2.1719 13 8 7.5529 3.4659 1.3356 14 6 7.0409 4.6006 3.3407 15 1 6.2584 5.3498 3.4603 16 6 7.1386 3.7573 4.6136 17 6 8.3592 5.2867 3.0904 18 1 8.9275 5.0567 2.2013 19 6 8.8397 6.2083 3.9965 20 7 10.1244 6.4871 4.0322 21 14 7.6658 7.0608 5.1733 22 1 7.1073 8.2735 4.5234 23 1 6.5599 6.1347 5.5266 24 1 8.3970 7.4514 6.4053 25 6 4.1956 1.1215 1.3961 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.4180 3.4402 0.4292 30 1 4.5091 3.0292 -0.9642 31 1 4.5460 4.6129 3.2774 32 1 3.4465 3.4258 2.5355 33 1 4.4913 2.9438 3.8934 34 1 7.4753 4.3839 5.4396 35 1 6.1594 3.3405 4.8493 36 1 7.8507 2.9468 4.4588 37 1 10.4625 7.1352 4.6699 38 1 4.6678 0.1528 1.5594 39 1 3.5299 1.4114 2.2091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598426738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:18 Heat of formation + Delta-G solvation = -93.289344 kcal Electronic energy + Delta-G solvation = -21069.404613 eV Core-core repulsion = 17785.511030 eV Total energy + Delta-G solvation = -3283.893582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08770 -39.64350 -37.88490 -36.51159 -34.20224 -33.50370 -31.07434 -28.68772 -26.93209 -26.02107 -25.64796 -25.11974 -23.02380 -21.05781 -19.38310 -18.80482 -17.76585 -17.11230 -16.79624 -16.58070 -15.89486 -15.46532 -15.18661 -14.60350 -14.33117 -13.67569 -13.53564 -13.19865 -13.07429 -12.71032 -12.48694 -12.29934 -12.20635 -12.04688 -11.80020 -11.55876 -11.44470 -11.18638 -11.07953 -10.93706 -10.71708 -10.57967 -10.41646 -10.35566 -9.69889 -9.27111 -8.66507 -8.31220 -8.17693 -6.09846 -4.00173 1.94753 2.45124 3.26250 3.34787 3.37650 3.50374 3.53041 4.17893 4.27959 4.41844 4.62397 4.75914 4.79796 4.84711 4.88298 5.18195 5.21565 5.30751 5.38739 5.48020 5.59461 5.66867 5.69037 5.81031 5.86811 5.96583 6.12364 6.25724 6.29855 6.47707 6.55215 6.84620 7.03485 7.25584 7.51403 7.61087 7.98837 8.53144 9.06874 9.16503 9.55854 11.03110 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039826 B = 0.004071 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.883533 B = 6876.700957 C = 7162.418019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.505 6.505 5 C -0.110 4.110 6 H 0.128 0.872 7 C -0.133 4.133 8 C 0.129 3.871 9 H 0.123 0.877 10 N -0.621 5.621 11 C 0.080 3.920 12 C 0.531 3.469 13 O -0.530 6.530 14 C 0.004 3.996 15 H 0.043 0.957 16 C -0.135 4.135 17 C -0.517 4.517 18 H 0.090 0.910 19 C 0.080 3.920 20 N -0.882 5.882 21 Si 0.857 3.143 22 H -0.278 1.278 23 H -0.258 1.258 24 H -0.287 1.287 25 C -0.131 4.131 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.908 -12.854 -4.360 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.392 6.392 5 C -0.130 4.130 6 H 0.146 0.854 7 C -0.172 4.172 8 C 0.024 3.976 9 H 0.141 0.859 10 N -0.356 5.356 11 C -0.063 4.063 12 C 0.322 3.678 13 O -0.404 6.404 14 C -0.018 4.018 15 H 0.061 0.939 16 C -0.193 4.193 17 C -0.554 4.554 18 H 0.108 0.892 19 C -0.123 4.123 20 N -0.518 5.518 21 Si 0.683 3.317 22 H -0.204 1.204 23 H -0.183 1.183 24 H -0.213 1.213 25 C -0.170 4.170 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.486 -12.559 -4.706 22.839 hybrid contribution -0.982 0.614 0.680 1.344 sum -19.468 -11.945 -4.026 23.193 Atomic orbital electron populations 1.23264 0.76559 1.03623 1.02542 1.86533 1.23272 1.33669 1.84035 1.23664 0.91756 0.81193 0.71824 1.90668 1.67000 1.36427 1.45107 1.22420 0.86881 1.01846 1.01813 0.85411 1.23504 0.98164 0.93936 1.01590 1.22303 0.97239 0.89248 0.88807 0.85942 1.48009 1.11677 1.45257 1.30636 1.21750 0.90595 1.01460 0.92511 1.21443 0.79639 0.79306 0.87455 1.90567 1.47419 1.59693 1.42688 1.19192 0.99406 0.93472 0.89691 0.93943 1.22059 0.98849 1.00112 0.98264 1.20837 1.02119 1.22944 1.09547 0.89245 1.24896 0.94423 0.96891 0.96114 1.70047 1.12118 1.33157 1.36489 0.87267 0.82667 0.80801 0.80940 1.20387 1.18256 1.21300 1.23453 0.98210 1.00925 0.94395 0.91954 0.88148 0.91904 0.88248 0.89902 0.90685 0.91755 0.92746 0.92551 0.95163 0.93106 0.92626 0.89446 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.55 10.56 -39.24 -0.41 -3.96 16 3 C 0.47 5.32 7.49 36.01 0.27 5.59 16 4 O -0.50 -7.03 15.65 -18.75 -0.29 -7.32 16 5 C -0.11 -1.10 4.26 -90.86 -0.39 -1.48 16 6 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 7 C -0.13 -1.62 6.93 -25.92 -0.18 -1.80 16 8 C 0.13 1.77 4.16 -67.11 -0.28 1.49 16 9 H 0.12 1.82 7.31 -51.93 -0.38 1.44 16 10 N -0.62 -10.37 3.08 -173.00 -0.53 -10.90 16 11 C 0.08 1.09 8.11 59.85 0.49 1.57 16 12 C 0.53 11.70 6.90 -10.99 -0.08 11.62 16 13 O -0.53 -13.58 15.06 5.55 0.08 -13.50 16 14 C 0.00 0.09 1.46 -92.92 -0.14 -0.04 16 15 H 0.04 0.95 5.27 -51.93 -0.27 0.68 16 16 C -0.13 -2.83 8.44 37.16 0.31 -2.52 16 17 C -0.52 -14.93 8.76 -34.43 -0.30 -15.23 16 18 H 0.09 2.94 7.05 -52.49 -0.37 2.57 16 19 C 0.08 2.29 5.22 -17.82 -0.09 2.19 16 20 N -0.88 -26.99 13.96 55.43 0.77 -26.22 16 21 Si 0.86 20.52 25.92 -169.99 -4.41 16.12 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.26 -5.63 5.84 56.52 0.33 -5.30 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.13 -1.36 7.03 -25.82 -0.18 -1.54 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.10 1.32 6.44 -51.93 -0.33 0.98 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.07 6.40 -51.92 -0.33 0.74 16 32 H 0.06 0.74 6.16 -51.93 -0.32 0.42 16 33 H 0.05 0.67 6.93 -51.93 -0.36 0.31 16 34 H 0.06 1.22 5.34 -51.93 -0.28 0.94 16 35 H 0.03 0.51 6.13 -51.93 -0.32 0.20 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.94 6.45 -51.93 -0.33 0.60 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -34.59 312.40 -5.05 -39.64 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.47 Total: 0.28 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 0.50 Total: 1.17 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.24 Total: -37.12 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.62 Total: -24.78 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.41 Total: 16.12 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.59 -5.05 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598426738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.649 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds