Wall clock time and date at job start Mon Mar 30 2020 04:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 116.99992 * 2 1 4 4 O 1.20826 * 120.00485 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99892 * 180.02562 * 3 2 1 6 6 H 1.08998 * 112.85599 * 48.80256 * 5 3 2 7 7 C 1.53782 * 113.61335 * 179.97438 * 5 3 2 8 8 C 1.53782 * 87.08091 * 140.06583 * 7 5 3 9 9 H 1.08999 * 113.61495 * 89.20151 * 8 7 5 10 10 N 1.46507 * 113.61448 * 220.01926 * 8 7 5 11 11 C 1.46499 * 119.99848 * 62.07839 * 10 8 7 12 12 C 1.34773 * 120.00241 * 242.07971 * 10 8 7 13 13 O 1.21290 * 119.99510 * 5.19228 * 12 10 8 14 14 C 1.50693 * 120.00038 * 185.19746 * 12 10 8 15 15 H 1.08995 * 109.47383 * 312.01592 * 14 12 10 16 16 C 1.52999 * 109.47301 * 72.02347 * 14 12 10 17 17 C 1.50708 * 109.46845 * 192.01755 * 14 12 10 18 18 H 1.08001 * 120.00160 * 356.73827 * 17 14 12 19 19 C 1.37884 * 119.99664 * 176.72701 * 17 14 12 20 20 N 1.31515 * 119.99457 * 158.23660 * 19 17 14 21 21 Si 1.86799 * 120.00295 * 338.23349 * 19 17 14 22 22 H 1.48496 * 109.47291 * 272.77064 * 21 19 17 23 23 H 1.48504 * 109.46673 * 32.76777 * 21 19 17 24 24 H 1.48497 * 109.46842 * 152.76539 * 21 19 17 25 25 C 1.53782 * 87.17444 * 334.61047 * 8 7 5 26 26 H 1.08994 * 109.47281 * 59.99891 * 1 2 3 27 27 H 1.09003 * 109.47392 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47085 * 299.99849 * 1 2 3 29 29 H 1.09000 * 113.61404 * 25.51682 * 7 5 3 30 30 H 1.08993 * 113.61406 * 254.61037 * 7 5 3 31 31 H 1.09007 * 109.47084 * 215.08553 * 11 10 8 32 32 H 1.08999 * 109.47127 * 335.08436 * 11 10 8 33 33 H 1.08997 * 109.47465 * 95.08425 * 11 10 8 34 34 H 1.09002 * 109.47154 * 174.42280 * 16 14 12 35 35 H 1.09002 * 109.47164 * 294.42516 * 16 14 12 36 36 H 1.09002 * 109.47551 * 54.42558 * 16 14 12 37 37 H 0.97002 * 119.99484 * 180.02562 * 20 19 17 38 38 H 1.08993 * 113.61897 * 139.94507 * 25 8 7 39 39 H 1.09006 * 113.60965 * 270.84644 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0234 0.6364 -0.7567 7 6 4.1077 2.7141 -0.0011 8 6 5.1827 2.2265 0.9844 9 1 6.0823 1.8493 0.4979 10 7 5.4737 3.1824 2.0558 11 6 4.4221 3.5657 3.0010 12 6 6.7088 3.7093 2.1719 13 8 7.5529 3.4659 1.3356 14 6 7.0409 4.6006 3.3407 15 1 6.2584 5.3498 3.4603 16 6 7.1386 3.7573 4.6136 17 6 8.3592 5.2867 3.0904 18 1 8.9275 5.0567 2.2013 19 6 8.8397 6.2083 3.9965 20 7 10.1244 6.4871 4.0322 21 14 7.6658 7.0608 5.1733 22 1 7.1073 8.2735 4.5234 23 1 6.5599 6.1347 5.5266 24 1 8.3970 7.4514 6.4053 25 6 4.1956 1.1215 1.3961 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.4180 3.4402 0.4292 30 1 4.5091 3.0292 -0.9642 31 1 4.5460 4.6129 3.2774 32 1 3.4465 3.4258 2.5355 33 1 4.4913 2.9438 3.8934 34 1 7.4753 4.3839 5.4396 35 1 6.1594 3.3405 4.8493 36 1 7.8507 2.9468 4.4588 37 1 10.4625 7.1352 4.6699 38 1 4.6678 0.1528 1.5594 39 1 3.5299 1.4114 2.2091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598426738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:18 Heat of formation + Delta-G solvation = -117.612802 kcal Electronic energy + Delta-G solvation = -21070.459357 eV Core-core repulsion = 17785.511030 eV Total energy + Delta-G solvation = -3284.948327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02063 -40.92237 -39.14251 -37.40144 -35.89325 -35.21417 -33.04787 -29.43723 -27.99861 -27.12523 -27.01622 -26.64808 -24.53483 -22.20648 -20.47069 -20.06694 -18.94597 -18.68885 -17.96633 -17.51354 -17.40167 -16.87598 -16.34121 -16.00002 -15.85889 -14.98478 -14.76229 -14.35641 -14.29442 -14.16705 -13.83645 -13.52480 -13.28945 -13.23510 -13.08029 -12.93345 -12.71681 -12.59416 -12.32857 -12.22895 -12.10772 -11.79516 -11.68152 -11.53107 -11.35511 -11.32342 -10.51724 -10.36805 -9.52156 -8.29990 -6.27412 1.09758 1.38047 1.43034 1.52215 1.68843 1.84410 2.23244 2.38693 3.02449 3.26353 3.39263 3.75817 3.81130 3.96130 4.11160 4.28477 4.32661 4.34409 4.46262 4.55223 4.57629 4.66409 4.67959 4.73033 4.73563 4.82426 4.91996 4.95279 4.96878 5.12825 5.26868 5.35625 5.50923 5.62184 5.74963 6.24826 6.55073 6.70212 6.83763 7.29559 7.46620 8.88046 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039826 B = 0.004071 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.883533 B = 6876.700957 C = 7162.418019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.477 3.523 4 O -0.536 6.536 5 C -0.097 4.097 6 H 0.152 0.848 7 C -0.133 4.133 8 C 0.111 3.889 9 H 0.104 0.896 10 N -0.609 5.609 11 C 0.069 3.931 12 C 0.525 3.475 13 O -0.584 6.584 14 C 0.001 3.999 15 H 0.064 0.936 16 C -0.129 4.129 17 C -0.536 4.536 18 H 0.025 0.975 19 C 0.019 3.981 20 N -0.939 5.939 21 Si 0.934 3.066 22 H -0.274 1.274 23 H -0.214 1.214 24 H -0.285 1.285 25 C -0.113 4.113 26 H 0.060 0.940 27 H 0.131 0.869 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.267 0.733 38 H 0.106 0.894 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.715 -14.156 -2.763 26.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.322 3.678 4 O -0.425 6.425 5 C -0.117 4.117 6 H 0.170 0.830 7 C -0.171 4.171 8 C 0.007 3.993 9 H 0.122 0.878 10 N -0.342 5.342 11 C -0.072 4.072 12 C 0.316 3.684 13 O -0.463 6.463 14 C -0.020 4.020 15 H 0.082 0.918 16 C -0.186 4.186 17 C -0.573 4.573 18 H 0.043 0.957 19 C -0.179 4.179 20 N -0.577 5.577 21 Si 0.756 3.244 22 H -0.200 1.200 23 H -0.136 1.136 24 H -0.211 1.211 25 C -0.151 4.151 26 H 0.079 0.921 27 H 0.149 0.851 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.372 -13.913 -3.109 26.528 hybrid contribution 0.198 0.950 0.063 0.972 sum -22.174 -12.964 -3.046 25.866 Atomic orbital electron populations 1.23551 0.74952 1.05675 1.02479 1.86521 1.24842 1.32698 1.83483 1.23745 0.91975 0.81139 0.70976 1.90663 1.67697 1.37471 1.46674 1.22367 0.86511 1.00374 1.02399 0.83010 1.23430 0.97407 0.95432 1.00875 1.22546 0.97613 0.90269 0.88843 0.87775 1.47918 1.10394 1.44436 1.31432 1.22055 0.90502 1.01766 0.92914 1.21231 0.81020 0.79468 0.86680 1.90546 1.49654 1.61795 1.44349 1.19150 0.96841 0.94360 0.91692 0.91838 1.21946 1.01152 0.99158 0.96382 1.20994 1.04333 1.24352 1.07659 0.95692 1.25924 0.96188 0.97115 0.98667 1.70205 1.14897 1.34261 1.38362 0.86037 0.80856 0.79815 0.77721 1.19953 1.13605 1.21087 1.23373 0.96760 1.00257 0.94752 0.92111 0.85102 0.91944 0.88982 0.90230 0.90970 0.89279 0.90370 0.93020 0.90349 0.94738 0.92375 0.87504 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.99 10.56 -51.36 -0.54 -6.53 16 3 C 0.48 9.45 7.49 71.24 0.53 9.98 16 4 O -0.54 -13.79 15.65 21.96 0.34 -13.45 16 5 C -0.10 -1.67 4.26 -10.95 -0.05 -1.71 16 6 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 7 C -0.13 -3.03 6.93 31.12 0.22 -2.82 16 8 C 0.11 2.90 4.16 45.52 0.19 3.09 16 9 H 0.10 3.13 7.31 -2.39 -0.02 3.11 16 10 N -0.61 -19.37 3.08 -819.63 -2.52 -21.89 16 11 C 0.07 1.62 8.11 127.77 1.04 2.65 16 12 C 0.53 23.38 6.90 87.66 0.60 23.99 16 13 O -0.58 -31.68 15.06 -3.06 -0.05 -31.72 16 14 C 0.00 0.05 1.46 -12.29 -0.02 0.03 16 15 H 0.06 2.68 5.27 -2.39 -0.01 2.67 16 16 C -0.13 -5.10 8.44 71.98 0.61 -4.49 16 17 C -0.54 -32.26 8.76 25.60 0.22 -32.03 16 18 H 0.02 1.77 7.05 -2.91 -0.02 1.75 16 19 C 0.02 1.13 5.22 84.66 0.44 1.57 16 20 N -0.94 -59.94 13.96 21.45 0.30 -59.64 16 21 Si 0.93 41.77 25.92 68.60 1.78 43.54 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.21 -8.01 5.84 99.48 0.58 -7.42 16 24 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 25 C -0.11 -1.96 7.03 31.18 0.22 -1.75 16 26 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 27 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.73 8.13 -2.38 -0.02 0.71 16 29 H 0.09 2.27 6.44 -2.39 -0.02 2.26 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.77 6.40 -2.38 -0.02 1.75 16 32 H 0.09 1.68 6.16 -2.39 -0.01 1.66 16 33 H 0.08 1.50 6.93 -2.39 -0.02 1.48 16 34 H 0.05 2.08 5.34 -2.39 -0.01 2.07 16 35 H 0.08 2.32 6.13 -2.39 -0.01 2.31 16 36 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.61 6.45 -2.38 -0.02 1.60 16 Total: -1.00 -81.47 312.40 5.45 -76.03 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.93 Total: 13.65 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.21 Total: 0.02 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -2.23 Total: -81.54 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.24 Total: -51.70 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.78 Total: 43.54 kcal Total: -81.47 5.45 -76.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598426738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.586 kcal (2) G-P(sol) polarization free energy of solvation -81.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds