Wall clock time and date at job start Mon Mar 30 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34773 * 120.00141 * 2 1 4 4 O 1.21349 * 120.00074 * 0.02562 * 3 2 1 5 5 C 1.49455 * 119.99604 * 180.02562 * 3 2 1 6 6 O 1.21341 * 120.00085 * 6.74507 * 5 3 2 7 7 N 1.34777 * 119.99579 * 186.75299 * 5 3 2 8 8 C 1.46967 * 120.59440 * 187.35312 * 7 5 3 9 9 C 1.53367 * 108.63455 * 235.24906 * 8 7 5 10 10 H 1.08992 * 109.61156 * 70.31769 * 9 8 7 11 11 C 1.52999 * 109.74982 * 190.74800 * 9 8 7 12 12 N 1.46966 * 108.63147 * 310.56856 * 9 8 7 13 13 C 1.36935 * 120.59570 * 235.20139 * 12 9 8 14 14 H 1.08001 * 119.99580 * 115.65503 * 13 12 9 15 15 C 1.38807 * 120.00265 * 295.65748 * 13 12 9 16 16 N 1.31619 * 120.00287 * 0.12884 * 15 13 12 17 17 Si 1.86800 * 120.00013 * 180.12184 * 15 13 12 18 18 H 1.48495 * 109.47197 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47525 * 300.00322 * 17 15 13 20 20 H 1.48501 * 109.46823 * 60.00434 * 17 15 13 21 21 C 1.46969 * 118.81143 * 55.48389 * 12 9 8 22 22 H 1.08999 * 109.60736 * 64.25975 * 21 12 9 23 23 C 1.52998 * 109.61131 * 184.77142 * 21 12 9 24 24 C 1.46966 * 120.59714 * 7.36825 * 7 5 3 25 25 H 1.08993 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46506 * 299.99985 * 1 2 3 27 27 H 1.08993 * 109.46927 * 59.99544 * 1 2 3 28 28 H 0.97008 * 119.99416 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.61317 * 115.49833 * 8 7 5 30 30 H 1.09008 * 109.74677 * 355.07224 * 8 7 5 31 31 H 1.08999 * 109.47324 * 174.85123 * 11 9 8 32 32 H 1.09003 * 109.46863 * 294.84913 * 11 9 8 33 33 H 1.09004 * 109.47628 * 54.84667 * 11 9 8 34 34 H 0.96991 * 120.00250 * 175.00658 * 16 15 13 35 35 H 1.09001 * 109.46904 * 64.96791 * 23 21 12 36 36 H 1.08994 * 109.47242 * 184.96710 * 23 21 12 37 37 H 1.08999 * 109.47521 * 304.96994 * 23 21 12 38 38 H 1.08992 * 109.61461 * 244.49967 * 24 7 5 39 39 H 1.09002 * 109.60644 * 4.84259 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5323 2.2181 0.0005 5 6 3.6335 1.1670 -0.0006 6 8 4.2401 0.1234 -0.1245 7 7 4.3075 2.3261 0.1367 8 6 5.7680 2.3654 -0.0223 9 6 6.3823 2.9776 1.2427 10 1 6.2794 2.2801 2.0738 11 6 7.8635 3.2781 1.0048 12 7 5.6700 4.2248 1.5543 13 6 6.3548 5.4022 1.6946 14 1 6.1837 6.2124 1.0012 15 6 7.2690 5.5545 2.7280 16 7 7.4794 4.5663 3.5715 17 14 8.2007 7.1619 2.9215 18 1 9.1096 7.0695 4.0922 19 1 8.9979 7.4227 1.6960 20 1 7.2358 8.2714 3.1297 21 6 4.2101 4.1845 1.7187 22 1 3.9561 3.5708 2.5830 23 6 3.6764 5.6044 1.9182 24 6 3.5952 3.5732 0.4483 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.9500 -0.8402 -0.0004 29 1 6.0256 2.9770 -0.8869 30 1 6.1506 1.3543 -0.1622 31 1 8.2731 3.7957 1.8722 32 1 8.4035 2.3439 0.8507 33 1 7.9692 3.9087 0.1219 34 1 8.1692 4.6453 4.2488 35 1 3.8480 6.1875 1.0133 36 1 2.6075 5.5648 2.1276 37 1 4.1935 6.0727 2.7556 38 1 3.6980 4.2708 -0.3828 39 1 2.5399 3.3592 0.6178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601224372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:29 Heat of formation + Delta-G solvation = -22.197878 kcal Electronic energy + Delta-G solvation = -22046.089618 eV Core-core repulsion = 18797.571544 eV Total energy + Delta-G solvation = -3248.518074 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.60479 -38.50013 -37.30460 -35.12428 -33.87236 -32.70087 -31.35276 -28.06902 -27.54510 -26.15927 -25.80105 -24.04417 -22.25983 -20.44987 -20.10548 -19.35585 -17.50510 -16.77725 -16.12917 -15.67136 -15.44019 -15.02305 -14.88074 -14.39469 -14.21006 -13.90076 -13.49592 -13.06803 -12.90167 -12.50188 -12.47260 -12.21746 -11.63681 -11.41279 -11.30524 -10.99799 -10.81276 -10.69662 -10.54545 -10.42077 -10.36049 -10.02810 -9.83307 -9.68232 -9.38090 -8.82748 -8.34753 -8.07354 -6.25384 -5.64610 -3.77070 1.62718 2.58445 3.31214 3.37079 3.38901 3.43348 3.80146 4.39384 4.55650 4.99590 5.27309 5.28496 5.30601 5.55461 5.80765 5.86155 5.99166 6.04161 6.17371 6.29758 6.31380 6.46849 6.60735 6.62677 6.64508 6.80804 6.91317 6.95946 7.10292 7.16748 7.29348 7.46151 7.73901 7.75463 7.91339 7.95881 8.27785 8.67288 9.24492 9.63327 10.49761 11.14283 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033321 B = 0.005577 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.113216 B = 5019.017454 C = 5553.411724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.709 5.709 3 C 0.509 3.491 4 O -0.509 6.509 5 C 0.496 3.504 6 O -0.543 6.543 7 N -0.557 5.557 8 C 0.088 3.912 9 C 0.184 3.816 10 H 0.033 0.967 11 C -0.143 4.143 12 N -0.579 5.579 13 C -0.262 4.262 14 H 0.049 0.951 15 C 0.038 3.962 16 N -0.876 5.876 17 Si 0.890 3.110 18 H -0.289 1.289 19 H -0.279 1.279 20 H -0.277 1.277 21 C 0.157 3.843 22 H 0.027 0.973 23 C -0.125 4.125 24 C 0.050 3.950 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.413 0.587 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.023 0.977 33 H 0.039 0.961 34 H 0.257 0.743 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -6.649 -5.813 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.362 5.362 3 C 0.292 3.708 4 O -0.385 6.385 5 C 0.277 3.723 6 O -0.422 6.422 7 N -0.287 5.287 8 C -0.036 4.036 9 C 0.077 3.923 10 H 0.050 0.950 11 C -0.201 4.201 12 N -0.303 5.303 13 C -0.392 4.392 14 H 0.067 0.933 15 C -0.164 4.164 16 N -0.515 5.515 17 Si 0.719 3.281 18 H -0.215 1.215 19 H -0.204 1.204 20 H -0.203 1.203 21 C 0.050 3.950 22 H 0.045 0.955 23 C -0.183 4.183 24 C -0.072 4.072 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.249 0.751 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.940 -6.411 -5.666 13.115 hybrid contribution 0.815 0.381 0.154 0.913 sum -9.124 -6.029 -5.513 12.247 Atomic orbital electron populations 1.21644 0.78726 1.02653 1.02746 1.45610 1.07910 1.08997 1.73726 1.20476 0.89174 0.84175 0.77025 1.90476 1.69998 1.29942 1.48081 1.19878 0.87719 0.84733 0.79927 1.90697 1.69510 1.30896 1.51146 1.47996 1.08686 1.07915 1.64089 1.22720 0.77656 1.01738 1.01448 1.20629 0.92105 0.88697 0.90882 0.94968 1.21979 0.94831 0.98874 1.04390 1.43935 0.99847 1.04372 1.82170 1.18576 1.20692 0.92302 1.07662 0.93329 1.25898 0.99537 0.96266 0.94744 1.69960 1.31918 1.31490 1.18160 0.86607 0.79700 0.84378 0.77462 1.21510 1.20440 1.20309 1.20992 0.86368 0.95013 0.92579 0.95531 1.21612 0.97703 0.96423 1.02517 1.23736 0.99772 0.84174 0.99561 0.90239 0.91682 0.91797 0.75104 0.91564 0.90172 0.87522 0.95827 0.94182 0.93261 0.93126 0.94435 0.91264 0.91873 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.70 59.85 0.64 1.36 16 2 N -0.71 -8.20 5.70 -67.51 -0.39 -8.59 16 3 C 0.51 7.93 7.76 -11.58 -0.09 7.84 16 4 O -0.51 -8.65 13.13 5.50 0.07 -8.58 16 5 C 0.50 9.02 7.74 -11.58 -0.09 8.93 16 6 O -0.54 -10.50 15.92 5.50 0.09 -10.41 16 7 N -0.56 -10.85 2.95 -172.72 -0.51 -11.36 16 8 C 0.09 1.77 5.91 -3.60 -0.02 1.75 16 9 C 0.18 4.24 3.16 -67.49 -0.21 4.03 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.14 -3.22 8.18 37.16 0.30 -2.92 16 12 N -0.58 -14.00 2.68 -156.77 -0.42 -14.42 16 13 C -0.26 -6.71 6.31 -15.06 -0.09 -6.80 16 14 H 0.05 1.27 7.68 -52.49 -0.40 0.87 16 15 C 0.04 0.98 4.07 -17.43 -0.07 0.91 16 16 N -0.88 -24.03 11.33 55.49 0.63 -23.40 16 17 Si 0.89 20.41 29.56 -169.99 -5.02 15.39 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 C 0.16 3.41 3.67 -67.25 -0.25 3.17 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 23 C -0.12 -2.47 8.27 37.16 0.31 -2.16 16 24 C 0.05 0.97 5.55 -3.37 -0.02 0.95 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.41 4.21 8.32 -40.82 -0.34 3.88 16 29 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 30 H 0.08 1.58 7.01 -51.92 -0.36 1.21 16 31 H 0.11 2.71 4.37 -51.93 -0.23 2.48 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 35 H 0.05 0.98 7.94 -51.93 -0.41 0.56 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.51 7.47 -51.93 -0.39 1.12 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.13 2.41 4.15 -55.55 -0.23 2.18 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -29.56 310.42 -6.18 -35.74 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.72 Total: 3.89 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 0.41 Total: 17.06 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.69 Total: -57.77 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.16 Total: -18.99 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.56 -6.18 -35.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601224372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.546 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds