Wall clock time and date at job start Mon Mar 30 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34773 * 120.00141 * 2 1 4 4 O 1.21349 * 120.00074 * 0.02562 * 3 2 1 5 5 C 1.49455 * 119.99604 * 180.02562 * 3 2 1 6 6 O 1.21341 * 120.00085 * 6.74507 * 5 3 2 7 7 N 1.34777 * 119.99579 * 186.75299 * 5 3 2 8 8 C 1.46967 * 120.59440 * 187.35312 * 7 5 3 9 9 C 1.53367 * 108.63455 * 235.24906 * 8 7 5 10 10 H 1.08992 * 109.61156 * 70.31769 * 9 8 7 11 11 C 1.52999 * 109.74982 * 190.74800 * 9 8 7 12 12 N 1.46966 * 108.63147 * 310.56856 * 9 8 7 13 13 C 1.36935 * 120.59570 * 235.20139 * 12 9 8 14 14 H 1.08001 * 119.99580 * 115.65503 * 13 12 9 15 15 C 1.38807 * 120.00265 * 295.65748 * 13 12 9 16 16 N 1.31619 * 120.00287 * 0.12884 * 15 13 12 17 17 Si 1.86800 * 120.00013 * 180.12184 * 15 13 12 18 18 H 1.48495 * 109.47197 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47525 * 300.00322 * 17 15 13 20 20 H 1.48501 * 109.46823 * 60.00434 * 17 15 13 21 21 C 1.46969 * 118.81143 * 55.48389 * 12 9 8 22 22 H 1.08999 * 109.60736 * 64.25975 * 21 12 9 23 23 C 1.52998 * 109.61131 * 184.77142 * 21 12 9 24 24 C 1.46966 * 120.59714 * 7.36825 * 7 5 3 25 25 H 1.08993 * 109.47239 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46506 * 299.99985 * 1 2 3 27 27 H 1.08993 * 109.46927 * 59.99544 * 1 2 3 28 28 H 0.97008 * 119.99416 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.61317 * 115.49833 * 8 7 5 30 30 H 1.09008 * 109.74677 * 355.07224 * 8 7 5 31 31 H 1.08999 * 109.47324 * 174.85123 * 11 9 8 32 32 H 1.09003 * 109.46863 * 294.84913 * 11 9 8 33 33 H 1.09004 * 109.47628 * 54.84667 * 11 9 8 34 34 H 0.96991 * 120.00250 * 175.00658 * 16 15 13 35 35 H 1.09001 * 109.46904 * 64.96791 * 23 21 12 36 36 H 1.08994 * 109.47242 * 184.96710 * 23 21 12 37 37 H 1.08999 * 109.47521 * 304.96994 * 23 21 12 38 38 H 1.08992 * 109.61461 * 244.49967 * 24 7 5 39 39 H 1.09002 * 109.60644 * 4.84259 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5323 2.2181 0.0005 5 6 3.6335 1.1670 -0.0006 6 8 4.2401 0.1234 -0.1245 7 7 4.3075 2.3261 0.1367 8 6 5.7680 2.3654 -0.0223 9 6 6.3823 2.9776 1.2427 10 1 6.2794 2.2801 2.0738 11 6 7.8635 3.2781 1.0048 12 7 5.6700 4.2248 1.5543 13 6 6.3548 5.4022 1.6946 14 1 6.1837 6.2124 1.0012 15 6 7.2690 5.5545 2.7280 16 7 7.4794 4.5663 3.5715 17 14 8.2007 7.1619 2.9215 18 1 9.1096 7.0695 4.0922 19 1 8.9979 7.4227 1.6960 20 1 7.2358 8.2714 3.1297 21 6 4.2101 4.1845 1.7187 22 1 3.9561 3.5708 2.5830 23 6 3.6764 5.6044 1.9182 24 6 3.5952 3.5732 0.4483 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.9500 -0.8402 -0.0004 29 1 6.0256 2.9770 -0.8869 30 1 6.1506 1.3543 -0.1622 31 1 8.2731 3.7957 1.8722 32 1 8.4035 2.3439 0.8507 33 1 7.9692 3.9087 0.1219 34 1 8.1692 4.6453 4.2488 35 1 3.8480 6.1875 1.0133 36 1 2.6075 5.5648 2.1276 37 1 4.1935 6.0727 2.7556 38 1 3.6980 4.2708 -0.3828 39 1 2.5399 3.3592 0.6178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601224372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:28 Heat of formation + Delta-G solvation = -43.326856 kcal Electronic energy + Delta-G solvation = -22047.005839 eV Core-core repulsion = 18797.571544 eV Total energy + Delta-G solvation = -3249.434295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96200 -39.91234 -38.92103 -36.42426 -35.34495 -34.41777 -33.24000 -29.64468 -28.87211 -27.72429 -27.37441 -25.75272 -23.65039 -22.10005 -21.56862 -21.01889 -18.92757 -18.23804 -17.74978 -17.10453 -16.91727 -16.67311 -16.23899 -16.13110 -15.63979 -15.36367 -15.06649 -14.81559 -14.14875 -13.99455 -13.73880 -13.34831 -13.17788 -13.10365 -13.00956 -12.74910 -12.60189 -12.34357 -12.28660 -12.21303 -12.10719 -11.73136 -11.63436 -11.46624 -10.42430 -10.31407 -10.08316 -9.80176 -8.24131 -7.57446 -5.79565 0.30461 1.33807 1.48656 1.50422 1.55761 2.08659 2.44923 2.56412 3.28034 3.30705 3.56178 4.13493 4.24970 4.36195 4.43052 4.48385 4.58490 4.62876 4.63401 4.77692 4.82701 4.92052 4.94816 4.99749 5.01142 5.20753 5.24581 5.39929 5.43272 5.59242 5.63476 5.73482 5.97543 6.06103 6.29638 6.64979 6.68764 6.91675 7.30945 7.71892 8.54325 9.14988 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033321 B = 0.005577 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.113216 B = 5019.017454 C = 5553.411724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.690 5.690 3 C 0.510 3.490 4 O -0.525 6.525 5 C 0.493 3.507 6 O -0.556 6.556 7 N -0.569 5.569 8 C 0.100 3.900 9 C 0.184 3.816 10 H -0.004 1.004 11 C -0.136 4.136 12 N -0.592 5.592 13 C -0.262 4.262 14 H 0.046 0.954 15 C -0.001 4.001 16 N -0.908 5.908 17 Si 0.947 3.053 18 H -0.295 1.295 19 H -0.272 1.272 20 H -0.274 1.274 21 C 0.150 3.850 22 H 0.002 0.998 23 C -0.114 4.114 24 C 0.067 3.933 25 H 0.118 0.882 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.421 0.579 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.253 0.747 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 -6.986 -7.028 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C 0.291 3.709 4 O -0.404 6.404 5 C 0.276 3.724 6 O -0.436 6.436 7 N -0.300 5.300 8 C -0.024 4.024 9 C 0.077 3.923 10 H 0.013 0.987 11 C -0.194 4.194 12 N -0.318 5.318 13 C -0.392 4.392 14 H 0.064 0.936 15 C -0.200 4.200 16 N -0.548 5.548 17 Si 0.774 3.226 18 H -0.221 1.221 19 H -0.198 1.198 20 H -0.199 1.199 21 C 0.044 3.956 22 H 0.019 0.981 23 C -0.172 4.172 24 C -0.056 4.056 25 H 0.137 0.863 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.258 0.742 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.446 -6.784 -6.899 14.988 hybrid contribution 1.206 0.366 0.534 1.368 sum -10.240 -6.419 -6.365 13.659 Atomic orbital electron populations 1.21954 0.76186 1.05311 1.02727 1.45643 1.09397 1.07947 1.71271 1.19971 0.87747 0.85234 0.77899 1.90444 1.69592 1.30680 1.49687 1.20422 0.89234 0.83935 0.78795 1.90681 1.70318 1.31185 1.51390 1.48055 1.08408 1.08589 1.64901 1.22420 0.78454 1.01694 0.99795 1.20534 0.92798 0.87890 0.91090 0.98663 1.21850 0.94694 0.99656 1.03179 1.44167 1.00921 1.04227 1.82438 1.18683 1.20566 0.92644 1.07325 0.93628 1.26433 1.00510 0.98583 0.94515 1.70095 1.32599 1.33204 1.18899 0.85706 0.78501 0.81204 0.77177 1.22094 1.19781 1.19911 1.21128 0.85335 0.96038 0.93104 0.98072 1.21502 0.99185 0.94912 1.01595 1.23575 0.99979 0.84015 0.98016 0.86339 0.91858 0.91573 0.74156 0.90760 0.89757 0.90150 0.93812 0.93791 0.93757 0.92629 0.91400 0.93873 0.91538 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.70 127.77 1.37 2.44 16 2 N -0.69 -14.11 5.70 -485.88 -2.77 -16.89 16 3 C 0.51 14.93 7.76 87.27 0.68 15.61 16 4 O -0.53 -16.83 13.13 -3.24 -0.04 -16.88 16 5 C 0.49 17.38 7.74 87.27 0.68 18.05 16 6 O -0.56 -20.85 15.92 -3.22 -0.05 -20.90 16 7 N -0.57 -21.79 2.95 -818.73 -2.41 -24.20 16 8 C 0.10 4.00 5.91 86.41 0.51 4.51 16 9 C 0.18 8.62 3.16 45.03 0.14 8.76 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.14 -6.17 8.18 71.98 0.59 -5.58 16 12 N -0.59 -29.00 2.68 -649.90 -1.74 -30.75 16 13 C -0.26 -13.49 6.31 84.03 0.53 -12.96 16 14 H 0.05 2.38 7.68 -2.91 -0.02 2.35 16 15 C 0.00 -0.05 4.07 84.86 0.35 0.29 16 16 N -0.91 -51.03 11.33 21.65 0.25 -50.78 16 17 Si 0.95 42.22 29.56 68.60 2.03 44.25 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 C 0.15 6.55 3.67 45.18 0.17 6.71 16 22 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 23 C -0.11 -4.44 8.27 71.98 0.60 -3.85 16 24 C 0.07 2.50 5.55 86.56 0.48 2.98 16 25 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.42 7.43 8.32 -92.70 -0.77 6.66 16 29 H 0.07 2.84 8.11 -2.39 -0.02 2.82 16 30 H 0.08 3.27 7.01 -2.38 -0.02 3.26 16 31 H 0.08 4.15 4.37 -2.39 -0.01 4.14 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.91 8.04 -2.38 -0.02 1.89 16 34 H 0.25 13.87 8.32 -92.72 -0.77 13.10 16 35 H 0.05 2.08 7.94 -2.39 -0.02 2.06 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.04 1.88 7.47 -2.39 -0.02 1.86 16 38 H 0.07 2.45 8.10 -2.39 -0.02 2.43 16 39 H 0.14 5.07 4.15 -59.74 -0.25 4.82 16 Total: -1.00 -63.91 310.42 1.38 -62.53 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.05 Total: 16.64 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 6.08 Total: 36.97 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -6.68 Total: -122.61 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.09 Total: -37.78 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -63.91 1.38 -62.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601224372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.204 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds