Wall clock time and date at job start Mon Mar 30 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 119.99709 * 2 1 4 4 O 1.21356 * 120.00102 * 359.97438 * 3 2 1 5 5 C 1.49449 * 120.00216 * 180.02562 * 3 2 1 6 6 O 1.21351 * 119.99911 * 6.65454 * 5 3 2 7 7 N 1.34774 * 120.00314 * 186.65694 * 5 3 2 8 8 C 1.46960 * 120.59595 * 188.06782 * 7 5 3 9 9 C 1.53369 * 108.63893 * 235.20647 * 8 7 5 10 10 H 1.09002 * 109.75520 * 190.74955 * 9 8 7 11 11 C 1.52998 * 109.61047 * 70.31954 * 9 8 7 12 12 N 1.46966 * 108.62960 * 310.57469 * 9 8 7 13 13 C 1.36935 * 120.59214 * 235.20009 * 12 9 8 14 14 H 1.08006 * 119.99808 * 152.18264 * 13 12 9 15 15 C 1.38816 * 120.00403 * 332.18813 * 13 12 9 16 16 N 1.31622 * 119.99583 * 342.04774 * 15 13 12 17 17 Si 1.86799 * 120.00341 * 162.05492 * 15 13 12 18 18 H 1.48506 * 109.47129 * 59.99630 * 17 15 13 19 19 H 1.48497 * 109.47144 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46791 * 299.99825 * 17 15 13 21 21 C 1.46960 * 118.81514 * 55.22792 * 12 9 8 22 22 H 1.09003 * 109.60934 * 64.68540 * 21 12 9 23 23 C 1.52995 * 109.61353 * 185.02740 * 21 12 9 24 24 C 1.46966 * 120.59226 * 8.04368 * 7 5 3 25 25 H 1.09001 * 109.46735 * 299.99950 * 1 2 3 26 26 H 1.08994 * 109.47329 * 60.00114 * 1 2 3 27 27 H 1.09008 * 109.46703 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00126 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.61147 * 115.45668 * 8 7 5 30 30 H 1.09003 * 109.61228 * 354.95237 * 8 7 5 31 31 H 1.09002 * 109.47013 * 300.85457 * 11 9 8 32 32 H 1.08998 * 109.47357 * 180.86100 * 11 9 8 33 33 H 1.08996 * 109.47067 * 60.85651 * 11 9 8 34 34 H 0.96997 * 119.99917 * 185.17504 * 16 15 13 35 35 H 1.09004 * 109.47487 * 53.72325 * 23 21 12 36 36 H 1.08997 * 109.47215 * 173.72620 * 23 21 12 37 37 H 1.09004 * 109.47321 * 293.72651 * 23 21 12 38 38 H 1.08995 * 109.60818 * 5.05534 * 24 7 5 39 39 H 1.08998 * 109.61258 * 244.53863 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5321 2.2182 -0.0005 5 6 3.6334 1.1673 -0.0006 6 8 4.2401 0.1236 -0.1228 7 7 4.3072 2.3266 0.1347 8 6 5.7659 2.3687 -0.0397 9 6 6.3929 2.9770 1.2209 10 1 7.4460 3.1932 1.0409 11 6 6.2625 1.9931 2.3853 12 7 5.6821 4.2218 1.5450 13 6 6.3668 5.3997 1.6825 14 1 5.8744 6.3381 1.4738 15 6 7.6938 5.3878 2.0899 16 7 8.1925 4.3202 2.6765 17 14 8.7716 6.8868 1.8060 18 1 8.1897 8.0560 2.5130 19 1 10.1360 6.6217 2.3287 20 1 8.8457 7.1747 0.3511 21 6 4.2235 4.1798 1.7194 22 1 3.9763 3.5670 2.5863 23 6 3.6898 5.5989 1.9248 24 6 3.5965 3.5715 0.4588 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.9501 -0.8400 0.0004 29 1 6.0133 2.9840 -0.9048 30 1 6.1461 1.3577 -0.1861 31 1 5.2090 1.7738 2.5594 32 1 6.6951 2.4337 3.2835 33 1 6.7903 1.0709 2.1425 34 1 9.0961 4.3378 3.0285 35 1 4.0279 6.2361 1.1076 36 1 2.6002 5.5782 1.9425 37 1 4.0611 5.9935 2.8706 38 1 2.5441 3.3548 0.6418 39 1 3.6894 4.2725 -0.3707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601224374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:31 Heat of formation + Delta-G solvation = -18.702590 kcal Electronic energy + Delta-G solvation = -22183.859361 eV Core-core repulsion = 18935.492854 eV Total energy + Delta-G solvation = -3248.366507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63148 -38.57312 -37.35118 -35.09158 -33.76458 -32.65481 -31.23778 -28.10063 -27.71632 -26.35370 -25.74746 -23.74926 -22.63469 -20.92766 -20.10449 -18.86852 -17.61171 -16.82521 -16.11020 -15.70565 -15.46340 -15.04081 -14.88469 -14.34300 -14.00623 -13.67401 -13.44768 -13.23580 -13.02353 -12.51125 -12.50505 -11.97261 -11.90345 -11.67745 -11.13011 -11.05268 -10.87056 -10.66980 -10.59782 -10.50598 -10.11562 -10.03957 -9.69975 -9.65217 -9.38904 -8.80984 -8.49759 -8.23671 -6.60755 -5.79597 -3.20834 1.62592 2.58529 3.37244 3.43561 3.44177 3.45074 3.79704 4.47159 4.55668 4.98488 5.27063 5.27910 5.36499 5.54111 5.77051 5.81774 5.96398 6.00549 6.17519 6.23919 6.27430 6.38884 6.50737 6.56279 6.62959 6.74262 6.88439 6.95514 7.01912 7.07880 7.14954 7.56457 7.64745 7.74363 7.85617 7.91798 8.28540 8.44177 9.19808 9.82297 10.38978 11.28578 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033601 B = 0.005700 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.100813 B = 4911.399942 C = 5390.780702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.709 5.709 3 C 0.509 3.491 4 O -0.510 6.510 5 C 0.495 3.505 6 O -0.541 6.541 7 N -0.555 5.555 8 C 0.087 3.913 9 C 0.179 3.821 10 H 0.111 0.889 11 C -0.138 4.138 12 N -0.582 5.582 13 C -0.253 4.253 14 H 0.072 0.928 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.285 1.285 21 C 0.154 3.846 22 H 0.028 0.972 23 C -0.134 4.134 24 C 0.054 3.946 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.413 0.587 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.020 0.980 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.255 0.745 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.130 0.870 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.949 -6.834 -4.486 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.362 5.362 3 C 0.291 3.709 4 O -0.387 6.387 5 C 0.277 3.723 6 O -0.420 6.420 7 N -0.285 5.285 8 C -0.036 4.036 9 C 0.072 3.928 10 H 0.128 0.872 11 C -0.197 4.197 12 N -0.305 5.305 13 C -0.382 4.382 14 H 0.090 0.910 15 C -0.194 4.194 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.211 1.211 21 C 0.047 3.953 22 H 0.046 0.954 23 C -0.192 4.192 24 C -0.069 4.069 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.249 0.751 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.870 -6.625 -4.535 14.330 hybrid contribution 0.865 0.376 -0.028 0.943 sum -11.005 -6.249 -4.563 13.453 Atomic orbital electron populations 1.21643 0.78756 1.02650 1.02721 1.45611 1.07899 1.09024 1.73713 1.20518 0.89243 0.84159 0.76994 1.90486 1.70050 1.30003 1.48127 1.19854 0.87629 0.84783 0.80014 1.90702 1.69454 1.30838 1.51016 1.47959 1.08861 1.07823 1.63878 1.22707 0.77733 1.01861 1.01316 1.20765 0.97994 0.85038 0.89045 0.87166 1.21976 0.98154 0.97618 1.01933 1.44215 1.00147 1.05365 1.80747 1.19178 0.93433 0.85968 1.39647 0.91016 1.25047 0.98776 0.97062 0.98529 1.69922 1.16517 1.28459 1.39648 0.86384 0.79832 0.82563 0.78054 1.21037 1.21752 1.21110 1.20814 0.86183 0.94985 0.93348 0.95391 1.21737 0.98096 0.96713 1.02613 1.23559 0.99577 0.84460 0.99325 0.91714 0.91800 0.90244 0.75097 0.91629 0.89916 0.96104 0.90654 0.95147 0.93503 0.92242 0.93917 0.92046 0.85325 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 59.85 0.64 1.35 16 2 N -0.71 -8.09 5.70 -67.51 -0.39 -8.47 16 3 C 0.51 7.81 7.75 -11.59 -0.09 7.72 16 4 O -0.51 -8.53 13.15 5.49 0.07 -8.46 16 5 C 0.50 8.88 7.74 -11.59 -0.09 8.79 16 6 O -0.54 -10.35 15.92 5.50 0.09 -10.26 16 7 N -0.55 -10.60 2.59 -172.99 -0.45 -11.05 16 8 C 0.09 1.75 5.97 -3.60 -0.02 1.73 16 9 C 0.18 4.13 2.35 -67.49 -0.16 3.97 16 10 H 0.11 2.85 5.96 -51.93 -0.31 2.54 16 11 C -0.14 -3.13 8.94 37.16 0.33 -2.80 16 12 N -0.58 -13.88 2.69 -157.02 -0.42 -14.30 16 13 C -0.25 -6.53 8.71 -15.06 -0.13 -6.66 16 14 H 0.07 1.81 6.06 -52.48 -0.32 1.50 16 15 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 16 N -0.90 -24.76 10.17 55.49 0.56 -24.19 16 17 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.15 3.20 3.23 -67.49 -0.22 2.98 16 22 H 0.03 0.63 7.41 -51.93 -0.38 0.24 16 23 C -0.13 -2.49 7.99 37.15 0.30 -2.19 16 24 C 0.05 1.01 5.51 -3.59 -0.02 0.99 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 28 H 0.41 4.17 8.32 -40.82 -0.34 3.83 16 29 H 0.07 1.30 8.14 -51.92 -0.42 0.87 16 30 H 0.08 1.64 6.97 -51.93 -0.36 1.27 16 31 H 0.02 0.45 7.02 -51.93 -0.36 0.09 16 32 H 0.07 1.91 7.23 -51.93 -0.38 1.53 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 35 H 0.06 1.12 6.98 -51.93 -0.36 0.76 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.21 7.97 -51.93 -0.41 0.79 16 38 H 0.13 2.33 4.20 -55.32 -0.23 2.10 16 39 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -29.56 308.35 -6.02 -35.58 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.56 Total: 4.57 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 0.46 Total: 15.90 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.69 Total: -58.02 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.16 Total: -18.72 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.56 -6.02 -35.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601224374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.874 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds