Wall clock time and date at job start Mon Mar 30 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 119.99709 * 2 1 4 4 O 1.21356 * 120.00102 * 359.97438 * 3 2 1 5 5 C 1.49449 * 120.00216 * 180.02562 * 3 2 1 6 6 O 1.21351 * 119.99911 * 6.65454 * 5 3 2 7 7 N 1.34774 * 120.00314 * 186.65694 * 5 3 2 8 8 C 1.46960 * 120.59595 * 188.06782 * 7 5 3 9 9 C 1.53369 * 108.63893 * 235.20647 * 8 7 5 10 10 H 1.09002 * 109.75520 * 190.74955 * 9 8 7 11 11 C 1.52998 * 109.61047 * 70.31954 * 9 8 7 12 12 N 1.46966 * 108.62960 * 310.57469 * 9 8 7 13 13 C 1.36935 * 120.59214 * 235.20009 * 12 9 8 14 14 H 1.08006 * 119.99808 * 152.18264 * 13 12 9 15 15 C 1.38816 * 120.00403 * 332.18813 * 13 12 9 16 16 N 1.31622 * 119.99583 * 342.04774 * 15 13 12 17 17 Si 1.86799 * 120.00341 * 162.05492 * 15 13 12 18 18 H 1.48506 * 109.47129 * 59.99630 * 17 15 13 19 19 H 1.48497 * 109.47144 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46791 * 299.99825 * 17 15 13 21 21 C 1.46960 * 118.81514 * 55.22792 * 12 9 8 22 22 H 1.09003 * 109.60934 * 64.68540 * 21 12 9 23 23 C 1.52995 * 109.61353 * 185.02740 * 21 12 9 24 24 C 1.46966 * 120.59226 * 8.04368 * 7 5 3 25 25 H 1.09001 * 109.46735 * 299.99950 * 1 2 3 26 26 H 1.08994 * 109.47329 * 60.00114 * 1 2 3 27 27 H 1.09008 * 109.46703 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00126 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.61147 * 115.45668 * 8 7 5 30 30 H 1.09003 * 109.61228 * 354.95237 * 8 7 5 31 31 H 1.09002 * 109.47013 * 300.85457 * 11 9 8 32 32 H 1.08998 * 109.47357 * 180.86100 * 11 9 8 33 33 H 1.08996 * 109.47067 * 60.85651 * 11 9 8 34 34 H 0.96997 * 119.99917 * 185.17504 * 16 15 13 35 35 H 1.09004 * 109.47487 * 53.72325 * 23 21 12 36 36 H 1.08997 * 109.47215 * 173.72620 * 23 21 12 37 37 H 1.09004 * 109.47321 * 293.72651 * 23 21 12 38 38 H 1.08995 * 109.60818 * 5.05534 * 24 7 5 39 39 H 1.08998 * 109.61258 * 244.53863 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5321 2.2182 -0.0005 5 6 3.6334 1.1673 -0.0006 6 8 4.2401 0.1236 -0.1228 7 7 4.3072 2.3266 0.1347 8 6 5.7659 2.3687 -0.0397 9 6 6.3929 2.9770 1.2209 10 1 7.4460 3.1932 1.0409 11 6 6.2625 1.9931 2.3853 12 7 5.6821 4.2218 1.5450 13 6 6.3668 5.3997 1.6825 14 1 5.8744 6.3381 1.4738 15 6 7.6938 5.3878 2.0899 16 7 8.1925 4.3202 2.6765 17 14 8.7716 6.8868 1.8060 18 1 8.1897 8.0560 2.5130 19 1 10.1360 6.6217 2.3287 20 1 8.8457 7.1747 0.3511 21 6 4.2235 4.1798 1.7194 22 1 3.9763 3.5670 2.5863 23 6 3.6898 5.5989 1.9248 24 6 3.5965 3.5715 0.4588 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.9501 -0.8400 0.0004 29 1 6.0133 2.9840 -0.9048 30 1 6.1461 1.3577 -0.1861 31 1 5.2090 1.7738 2.5594 32 1 6.6951 2.4337 3.2835 33 1 6.7903 1.0709 2.1425 34 1 9.0961 4.3378 3.0285 35 1 4.0279 6.2361 1.1076 36 1 2.6002 5.5782 1.9425 37 1 4.0611 5.9935 2.8706 38 1 2.5441 3.3548 0.6418 39 1 3.6894 4.2725 -0.3707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601224374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:30 Heat of formation + Delta-G solvation = -39.396156 kcal Electronic energy + Delta-G solvation = -22184.756701 eV Core-core repulsion = 18935.492854 eV Total energy + Delta-G solvation = -3249.263847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.97374 -39.96984 -38.92041 -36.32219 -35.25438 -34.34981 -33.11141 -29.80507 -28.92884 -27.88252 -27.22801 -25.55077 -24.02049 -22.51077 -21.42942 -20.59779 -19.03260 -18.25180 -17.64625 -17.08578 -17.05040 -16.61841 -16.07509 -15.83145 -15.65705 -15.31724 -15.01811 -14.86520 -14.30453 -13.83441 -13.66970 -13.51706 -13.41010 -13.08339 -12.89470 -12.77757 -12.57385 -12.37941 -12.28898 -12.17117 -11.95089 -11.78524 -11.52153 -11.42119 -10.46720 -10.39404 -10.18407 -9.83881 -8.50709 -7.79375 -5.22235 0.33071 1.35845 1.50698 1.53578 1.58770 2.11117 2.48855 2.60671 3.32607 3.34618 3.55587 4.16275 4.19678 4.36792 4.43689 4.51725 4.56870 4.63420 4.64027 4.73151 4.79755 4.87600 4.93350 4.95721 5.05869 5.15037 5.19299 5.37132 5.40223 5.52398 5.67608 5.75025 5.82228 6.02999 6.32702 6.47051 6.71178 6.93788 7.21763 7.90639 8.43785 9.26655 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033601 B = 0.005700 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.100813 B = 4911.399942 C = 5390.780702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.691 5.691 3 C 0.510 3.490 4 O -0.526 6.526 5 C 0.494 3.506 6 O -0.554 6.554 7 N -0.565 5.565 8 C 0.099 3.901 9 C 0.178 3.822 10 H 0.080 0.920 11 C -0.120 4.120 12 N -0.595 5.595 13 C -0.255 4.255 14 H 0.077 0.923 15 C -0.044 4.044 16 N -0.926 5.926 17 Si 0.960 3.040 18 H -0.279 1.279 19 H -0.299 1.299 20 H -0.282 1.282 21 C 0.148 3.852 22 H 0.013 0.987 23 C -0.125 4.125 24 C 0.068 3.932 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.421 0.579 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.021 0.979 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.247 0.753 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.144 0.856 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 -7.280 -5.383 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C 0.291 3.709 4 O -0.405 6.405 5 C 0.277 3.723 6 O -0.434 6.434 7 N -0.295 5.295 8 C -0.025 4.025 9 C 0.071 3.929 10 H 0.098 0.902 11 C -0.179 4.179 12 N -0.318 5.318 13 C -0.385 4.385 14 H 0.094 0.906 15 C -0.240 4.240 16 N -0.573 5.573 17 Si 0.789 3.211 18 H -0.205 1.205 19 H -0.226 1.226 20 H -0.208 1.208 21 C 0.042 3.958 22 H 0.031 0.969 23 C -0.183 4.183 24 C -0.055 4.055 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.258 0.742 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.160 0.840 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.967 -7.106 -5.443 16.589 hybrid contribution 1.411 0.407 0.254 1.490 sum -12.556 -6.698 -5.189 15.148 Atomic orbital electron populations 1.21947 0.76241 1.05269 1.02715 1.45645 1.09374 1.07993 1.71298 1.20002 0.87811 0.85204 0.77871 1.90457 1.69637 1.30709 1.49684 1.20387 0.89118 0.83972 0.78862 1.90690 1.70259 1.31170 1.51249 1.47977 1.08319 1.08551 1.64697 1.22382 0.78794 1.01682 0.99627 1.20630 0.96752 0.85177 0.90341 0.90198 1.21765 0.97850 0.97729 1.00580 1.44416 1.01468 1.05023 1.80929 1.19469 0.93688 0.86903 1.38411 0.90588 1.25677 0.99953 0.99354 0.99016 1.70084 1.16205 1.29991 1.40974 0.85458 0.77837 0.80017 0.77767 1.20542 1.22602 1.20824 1.20994 0.84587 0.96325 0.93927 0.96939 1.21653 1.00075 0.95033 1.01519 1.23452 0.99847 0.84207 0.97981 0.91796 0.91643 0.86418 0.74178 0.91383 0.89595 0.95992 0.93738 0.94165 0.94319 0.92524 0.90645 0.93636 0.83968 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.70 127.77 1.37 2.40 16 2 N -0.69 -13.68 5.70 -485.87 -2.77 -16.45 16 3 C 0.51 14.47 7.75 87.27 0.68 15.14 16 4 O -0.53 -16.32 13.15 -3.26 -0.04 -16.36 16 5 C 0.49 16.91 7.74 87.27 0.68 17.58 16 6 O -0.55 -20.34 15.92 -3.25 -0.05 -20.40 16 7 N -0.56 -20.98 2.59 -819.59 -2.12 -23.10 16 8 C 0.10 3.96 5.97 86.42 0.52 4.48 16 9 C 0.18 8.36 2.35 45.03 0.11 8.46 16 10 H 0.08 4.26 5.96 -2.39 -0.01 4.24 16 11 C -0.12 -5.56 8.94 71.98 0.64 -4.92 16 12 N -0.60 -28.57 2.69 -650.70 -1.75 -30.32 16 13 C -0.25 -13.23 8.71 84.03 0.73 -12.50 16 14 H 0.08 3.82 6.06 -2.91 -0.02 3.80 16 15 C -0.04 -2.37 4.90 84.86 0.42 -1.96 16 16 N -0.93 -52.32 10.17 21.65 0.22 -52.10 16 17 Si 0.96 43.87 29.59 68.60 2.03 45.90 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 C 0.15 6.07 3.23 45.03 0.15 6.22 16 22 H 0.01 0.57 7.41 -2.39 -0.02 0.55 16 23 C -0.12 -4.50 7.99 71.98 0.58 -3.92 16 24 C 0.07 2.44 5.51 86.42 0.48 2.92 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.42 7.21 8.32 -92.71 -0.77 6.44 16 29 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 30 H 0.09 3.37 6.97 -2.39 -0.02 3.35 16 31 H 0.02 0.96 7.02 -2.39 -0.02 0.95 16 32 H 0.04 2.31 7.23 -2.39 -0.02 2.29 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.25 13.81 8.32 -92.71 -0.77 13.04 16 35 H 0.06 2.06 6.98 -2.38 -0.02 2.04 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 1.76 7.97 -2.38 -0.02 1.74 16 38 H 0.14 4.85 4.20 -56.02 -0.24 4.61 16 39 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 Total: -1.00 -63.52 308.35 1.91 -61.61 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.07 Total: 17.32 kcal Atomic # 6 Polarization: 27.57 SS G_CDS: 6.33 Total: 33.90 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -6.43 Total: -121.97 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.09 Total: -36.76 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -63.52 1.91 -61.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601224374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.215 kcal (2) G-P(sol) polarization free energy of solvation -63.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds