Wall clock time and date at job start Mon Mar 30 2020 04:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.20758 * 119.99678 * 2 1 4 4 C 1.50694 * 119.99887 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47155 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.67527 * 315.51130 * 5 4 2 7 7 C 1.53287 * 109.68359 * 194.99296 * 5 4 2 8 8 O 1.42962 * 109.22556 * 187.97687 * 7 5 4 9 9 C 1.42963 * 114.16645 * 62.57994 * 8 7 5 10 10 C 1.53303 * 109.22027 * 297.42067 * 9 8 7 11 11 N 1.47151 * 109.67866 * 76.06705 * 5 4 2 12 12 C 1.34781 * 120.98388 * 350.23625 * 11 5 4 13 13 O 1.21283 * 120.00068 * 6.42082 * 12 11 5 14 14 C 1.50697 * 120.00079 * 186.42077 * 12 11 5 15 15 H 1.09001 * 109.47122 * 50.30625 * 14 12 11 16 16 C 1.52994 * 109.47224 * 290.30523 * 14 12 11 17 17 C 1.50704 * 109.47014 * 170.30376 * 14 12 11 18 18 H 1.07998 * 119.99970 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99762 * 180.02562 * 17 14 12 20 20 N 1.31513 * 120.00134 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99993 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46980 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47315 * 119.99339 * 21 19 17 24 24 H 1.48493 * 109.46984 * 239.99983 * 21 19 17 25 25 H 1.09006 * 109.46645 * 90.00161 * 1 2 3 26 26 H 1.08993 * 109.46896 * 330.00344 * 1 2 3 27 27 H 1.08997 * 109.47316 * 209.99846 * 1 2 3 28 28 H 1.08997 * 109.47805 * 300.00607 * 4 2 1 29 29 H 1.09002 * 109.47359 * 60.00823 * 4 2 1 30 30 H 1.09000 * 109.51515 * 307.90206 * 7 5 4 31 31 H 1.09004 * 109.51432 * 68.00072 * 7 5 4 32 32 H 1.08998 * 109.51079 * 57.34366 * 9 8 7 33 33 H 1.08998 * 109.51588 * 177.44918 * 9 8 7 34 34 H 1.09000 * 109.67987 * 172.02527 * 10 9 8 35 35 H 1.08990 * 109.68362 * 292.54267 * 10 9 8 36 36 H 1.09004 * 109.47491 * 310.48615 * 16 14 12 37 37 H 1.08997 * 109.47260 * 70.48151 * 16 14 12 38 38 H 1.09004 * 109.47181 * 190.48722 * 16 14 12 39 39 H 0.97001 * 120.00035 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 1 3.9921 -0.2388 -0.7182 7 6 4.5273 -2.3020 -0.3717 8 8 5.9283 -2.0840 -0.1884 9 6 6.3053 -1.8035 1.1618 10 6 5.6338 -0.5013 1.6131 11 7 4.1905 -0.6067 1.3460 12 6 3.2853 -0.3272 2.3047 13 8 2.1067 -0.5304 2.1035 14 6 3.7377 0.2376 3.6265 15 1 4.3921 1.0916 3.4518 16 6 4.4982 -0.8365 4.4067 17 6 2.5361 0.6799 4.4214 18 1 1.5442 0.5632 4.0106 19 6 2.7033 1.2335 5.6730 20 7 3.9113 1.3752 6.1734 21 14 1.2140 1.7811 6.6586 22 1 -0.0212 1.5145 5.8784 23 1 1.1635 1.0293 7.9382 24 1 1.3155 3.2351 6.9423 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 0.8900 0.5138 27 1 -0.3634 -0.8900 0.5138 28 1 1.9972 -1.8764 0.8907 29 1 1.9973 -1.8770 -0.8892 30 1 4.1997 -3.1217 0.2677 31 1 4.3304 -2.5524 -1.4141 32 1 5.9841 -2.6213 1.8068 33 1 7.3882 -1.6955 1.2225 34 1 5.7998 -0.3534 2.6802 35 1 6.0503 0.3384 1.0570 36 1 3.9146 -1.7571 4.4207 37 1 5.4588 -1.0227 3.9265 38 1 4.6628 -0.4951 5.4287 39 1 4.0289 1.7643 7.0541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613413297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:13 Heat of formation + Delta-G solvation = -92.017534 kcal Electronic energy + Delta-G solvation = -22478.129929 eV Core-core repulsion = 19194.291497 eV Total energy + Delta-G solvation = -3283.838432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53673 -38.41757 -37.71690 -34.31204 -34.21492 -32.63309 -30.26992 -30.14304 -28.14632 -26.40262 -25.27115 -23.16585 -22.83573 -21.07922 -19.28679 -18.39570 -16.62654 -16.45521 -16.04830 -15.86219 -15.26250 -15.09775 -14.80026 -14.65176 -14.24184 -14.04528 -13.71788 -13.27191 -13.05712 -12.41406 -12.24541 -12.14244 -11.79938 -11.64208 -11.34630 -11.26691 -11.06253 -11.02769 -10.74838 -10.68585 -10.38139 -10.24757 -9.98838 -9.92747 -9.06595 -9.01480 -8.46350 -8.08577 -8.02328 -6.05427 -4.08596 2.64969 3.30454 3.37502 3.40677 3.48783 3.69189 3.85195 4.44463 4.49788 4.96291 5.02284 5.10031 5.22981 5.27676 5.36298 5.44818 5.54443 5.60024 5.65647 5.75464 5.79306 5.81537 6.01118 6.03938 6.09887 6.36135 6.47545 6.54792 6.77395 6.87235 7.00682 7.12946 7.39614 7.72227 7.93743 8.05975 8.22741 8.33069 8.98979 9.12016 9.56436 11.01954 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.007724 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.195563 B = 3624.288398 C = 4798.663102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.392 3.608 3 O -0.479 6.479 4 C -0.165 4.165 5 C 0.118 3.882 6 H 0.079 0.921 7 C 0.054 3.946 8 O -0.383 6.383 9 C 0.048 3.952 10 C 0.062 3.938 11 N -0.617 5.617 12 C 0.540 3.460 13 O -0.545 6.545 14 C 0.030 3.970 15 H 0.050 0.950 16 C -0.140 4.140 17 C -0.494 4.494 18 H 0.073 0.927 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.098 0.902 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 -7.959 -11.182 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.269 3.731 3 O -0.355 6.355 4 C -0.202 4.202 5 C 0.014 3.986 6 H 0.097 0.903 7 C -0.024 4.024 8 O -0.301 6.301 9 C -0.029 4.029 10 C -0.061 4.061 11 N -0.353 5.353 12 C 0.334 3.666 13 O -0.425 6.425 14 C 0.009 3.991 15 H 0.068 0.932 16 C -0.198 4.198 17 C -0.533 4.533 18 H 0.091 0.909 19 C -0.143 4.143 20 N -0.536 5.536 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.146 0.854 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.116 0.884 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.660 -7.453 -11.262 13.607 hybrid contribution -0.868 0.299 0.822 1.233 sum 0.792 -7.154 -10.440 12.681 Atomic orbital electron populations 1.22120 0.95405 1.04767 1.02586 1.23785 0.91339 0.89724 0.68212 1.90373 1.71665 1.35095 1.38377 1.22539 0.93608 0.99607 1.04452 1.21664 0.94119 0.96682 0.86129 0.90350 1.23021 0.81482 0.96030 1.01851 1.87907 1.23233 1.91339 1.27637 1.23013 1.00073 0.96476 0.83374 1.22718 0.80813 0.97800 1.04778 1.48243 1.06454 1.69483 1.11104 1.21901 0.84946 0.73937 0.85836 1.90317 1.18434 1.53580 1.80149 1.18884 0.98182 0.94951 0.87087 0.93210 1.21975 0.95726 0.97347 1.04755 1.21134 0.92849 1.38898 1.00416 0.90866 1.24944 0.96104 0.95725 0.97568 1.69866 1.20649 1.45295 1.17795 0.86405 0.83064 0.78165 0.79670 1.19625 1.21046 1.21053 0.90223 0.90215 0.90076 0.85410 0.90730 0.92662 0.88230 0.92586 0.87874 0.86293 0.91369 0.95312 0.95885 0.88366 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 10.24 36.01 0.37 -2.44 16 2 C 0.39 7.04 4.50 -29.03 -0.13 6.91 16 3 O -0.48 -10.56 15.58 -13.36 -0.21 -10.77 16 4 C -0.16 -2.52 4.65 -27.88 -0.13 -2.65 16 5 C 0.12 1.88 2.67 -67.42 -0.18 1.71 16 6 H 0.08 1.34 7.55 -51.93 -0.39 0.94 16 7 C 0.05 0.70 6.24 37.31 0.23 0.93 16 8 O -0.38 -5.37 10.74 -35.23 -0.38 -5.75 16 9 C 0.05 0.63 6.99 37.31 0.26 0.89 16 10 C 0.06 0.98 6.11 -3.53 -0.02 0.96 16 11 N -0.62 -11.47 2.99 -164.75 -0.49 -11.97 16 12 C 0.54 12.19 6.13 -10.99 -0.07 12.12 16 13 O -0.55 -12.87 9.27 -13.80 -0.13 -13.00 16 14 C 0.03 0.74 1.81 -92.93 -0.17 0.57 16 15 H 0.05 1.32 7.81 -51.93 -0.41 0.92 16 16 C -0.14 -3.15 8.70 37.15 0.32 -2.83 16 17 C -0.49 -13.94 8.37 -34.44 -0.29 -14.22 16 18 H 0.07 2.17 6.80 -52.49 -0.36 1.82 16 19 C 0.06 1.58 5.26 -17.82 -0.09 1.48 16 20 N -0.90 -25.04 11.30 55.43 0.63 -24.42 16 21 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.10 8.12 -51.93 -0.42 0.67 16 28 H 0.13 2.18 6.03 -51.93 -0.31 1.86 16 29 H 0.07 0.83 8.06 -51.93 -0.42 0.42 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.12 1.98 3.74 -51.93 -0.19 1.78 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.02 0.43 5.31 -51.93 -0.28 0.15 16 38 H 0.10 2.46 5.86 -51.93 -0.30 2.16 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -32.31 305.07 -6.49 -38.81 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.60 Total: 2.25 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 0.11 Total: 3.44 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.13 Total: -36.38 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.71 Total: -29.51 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.31 -6.49 -38.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613413297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.212 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds