Wall clock time and date at job start Mon Mar 30 2020 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.20758 * 119.99678 * 2 1 4 4 C 1.50694 * 119.99887 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47155 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.67527 * 315.51130 * 5 4 2 7 7 C 1.53287 * 109.68359 * 194.99296 * 5 4 2 8 8 O 1.42962 * 109.22556 * 187.97687 * 7 5 4 9 9 C 1.42963 * 114.16645 * 62.57994 * 8 7 5 10 10 C 1.53303 * 109.22027 * 297.42067 * 9 8 7 11 11 N 1.47151 * 109.67866 * 76.06705 * 5 4 2 12 12 C 1.34781 * 120.98388 * 350.23625 * 11 5 4 13 13 O 1.21283 * 120.00068 * 6.42082 * 12 11 5 14 14 C 1.50697 * 120.00079 * 186.42077 * 12 11 5 15 15 H 1.09001 * 109.47122 * 50.30625 * 14 12 11 16 16 C 1.52994 * 109.47224 * 290.30523 * 14 12 11 17 17 C 1.50704 * 109.47014 * 170.30376 * 14 12 11 18 18 H 1.07998 * 119.99970 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99762 * 180.02562 * 17 14 12 20 20 N 1.31513 * 120.00134 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99993 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46980 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47315 * 119.99339 * 21 19 17 24 24 H 1.48493 * 109.46984 * 239.99983 * 21 19 17 25 25 H 1.09006 * 109.46645 * 90.00161 * 1 2 3 26 26 H 1.08993 * 109.46896 * 330.00344 * 1 2 3 27 27 H 1.08997 * 109.47316 * 209.99846 * 1 2 3 28 28 H 1.08997 * 109.47805 * 300.00607 * 4 2 1 29 29 H 1.09002 * 109.47359 * 60.00823 * 4 2 1 30 30 H 1.09000 * 109.51515 * 307.90206 * 7 5 4 31 31 H 1.09004 * 109.51432 * 68.00072 * 7 5 4 32 32 H 1.08998 * 109.51079 * 57.34366 * 9 8 7 33 33 H 1.08998 * 109.51588 * 177.44918 * 9 8 7 34 34 H 1.09000 * 109.67987 * 172.02527 * 10 9 8 35 35 H 1.08990 * 109.68362 * 292.54267 * 10 9 8 36 36 H 1.09004 * 109.47491 * 310.48615 * 16 14 12 37 37 H 1.08997 * 109.47260 * 70.48151 * 16 14 12 38 38 H 1.09004 * 109.47181 * 190.48722 * 16 14 12 39 39 H 0.97001 * 120.00035 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0255 0.0011 6 1 3.9921 -0.2388 -0.7182 7 6 4.5273 -2.3020 -0.3717 8 8 5.9283 -2.0840 -0.1884 9 6 6.3053 -1.8035 1.1618 10 6 5.6338 -0.5013 1.6131 11 7 4.1905 -0.6067 1.3460 12 6 3.2853 -0.3272 2.3047 13 8 2.1067 -0.5304 2.1035 14 6 3.7377 0.2376 3.6265 15 1 4.3921 1.0916 3.4518 16 6 4.4982 -0.8365 4.4067 17 6 2.5361 0.6799 4.4214 18 1 1.5442 0.5632 4.0106 19 6 2.7033 1.2335 5.6730 20 7 3.9113 1.3752 6.1734 21 14 1.2140 1.7811 6.6586 22 1 -0.0212 1.5145 5.8784 23 1 1.1635 1.0293 7.9382 24 1 1.3155 3.2351 6.9423 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 0.8900 0.5138 27 1 -0.3634 -0.8900 0.5138 28 1 1.9972 -1.8764 0.8907 29 1 1.9973 -1.8770 -0.8892 30 1 4.1997 -3.1217 0.2677 31 1 4.3304 -2.5524 -1.4141 32 1 5.9841 -2.6213 1.8068 33 1 7.3882 -1.6955 1.2225 34 1 5.7998 -0.3534 2.6802 35 1 6.0503 0.3384 1.0570 36 1 3.9146 -1.7571 4.4207 37 1 5.4588 -1.0227 3.9265 38 1 4.6628 -0.4951 5.4287 39 1 4.0289 1.7643 7.0541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613413297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:12 Heat of formation + Delta-G solvation = -113.363067 kcal Electronic energy + Delta-G solvation = -22479.055541 eV Core-core repulsion = 19194.291497 eV Total energy + Delta-G solvation = -3284.764044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97212 -39.77545 -39.18012 -36.09109 -35.70058 -34.16853 -32.09055 -31.43442 -29.43891 -27.57024 -27.32072 -24.72584 -24.17276 -22.56270 -20.67195 -19.92333 -18.41612 -18.03664 -17.39006 -17.27031 -16.75816 -16.52362 -16.22503 -16.03687 -15.68723 -15.59122 -15.18758 -14.78486 -14.70574 -14.14326 -13.53352 -13.36257 -13.24832 -12.99229 -12.89408 -12.84512 -12.76933 -12.62980 -12.29301 -12.21081 -12.14541 -11.99559 -11.66258 -11.16250 -11.03907 -10.56229 -10.47542 -9.75394 -9.43093 -8.17619 -6.28040 1.22697 1.36073 1.38013 1.50657 1.98401 2.05722 2.42057 2.83550 3.11654 3.29525 3.71151 3.84010 3.98528 4.09336 4.19258 4.24281 4.31485 4.38001 4.53885 4.58046 4.65388 4.68695 4.72492 4.80585 4.84417 4.86249 4.96462 5.05992 5.11588 5.25518 5.40787 5.64222 5.71014 5.94903 6.09270 6.17957 6.51809 6.79805 6.86895 7.36462 7.45417 8.88159 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.007724 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.195563 B = 3624.288398 C = 4798.663102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.380 3.620 3 O -0.531 6.531 4 C -0.160 4.160 5 C 0.112 3.888 6 H 0.066 0.934 7 C 0.060 3.940 8 O -0.389 6.389 9 C 0.055 3.945 10 C 0.055 3.945 11 N -0.615 5.615 12 C 0.534 3.466 13 O -0.565 6.565 14 C 0.027 3.973 15 H 0.024 0.976 16 C -0.126 4.126 17 C -0.520 4.520 18 H 0.049 0.951 19 C 0.017 3.983 20 N -0.911 5.911 21 Si 0.955 3.045 22 H -0.278 1.278 23 H -0.271 1.271 24 H -0.278 1.278 25 H 0.119 0.881 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.061 0.939 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 -9.721 -12.372 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.262 3.738 3 O -0.411 6.411 4 C -0.197 4.197 5 C 0.008 3.992 6 H 0.084 0.916 7 C -0.017 4.017 8 O -0.307 6.307 9 C -0.022 4.022 10 C -0.067 4.067 11 N -0.349 5.349 12 C 0.327 3.673 13 O -0.446 6.446 14 C 0.005 3.995 15 H 0.042 0.958 16 C -0.183 4.183 17 C -0.559 4.559 18 H 0.067 0.933 19 C -0.182 4.182 20 N -0.551 5.551 21 Si 0.780 3.220 22 H -0.203 1.203 23 H -0.196 1.196 24 H -0.204 1.204 25 H 0.137 0.863 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.959 -9.244 -12.470 15.645 hybrid contribution -0.942 0.882 1.134 1.718 sum 1.016 -8.362 -11.336 14.123 Atomic orbital electron populations 1.22140 0.93324 1.04200 1.04925 1.24597 0.92989 0.90059 0.66136 1.90354 1.72877 1.36962 1.40949 1.22473 0.92819 0.98335 1.06113 1.21929 0.95246 0.98012 0.83968 0.91607 1.23128 0.80462 0.94025 1.04069 1.87913 1.23747 1.91098 1.27923 1.23075 1.01469 0.94515 0.83110 1.22896 0.79595 1.00020 1.04220 1.48202 1.06998 1.68189 1.11491 1.21391 0.85266 0.74622 0.86047 1.90307 1.19119 1.54536 1.80674 1.18767 0.96795 0.94949 0.88946 0.95817 1.21776 0.97287 0.96168 1.03114 1.21270 0.92981 1.40166 1.01455 0.93288 1.25602 0.98643 0.95644 0.98282 1.69951 1.21819 1.45215 1.18101 0.85552 0.79777 0.78058 0.78564 1.20323 1.19640 1.20413 0.86316 0.92471 0.88826 0.86803 0.85552 0.91860 0.84750 0.92064 0.84836 0.87508 0.91242 0.95435 0.92220 0.91001 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.36 10.24 71.24 0.73 -4.63 16 2 C 0.38 13.56 4.50 29.10 0.13 13.69 16 3 O -0.53 -24.03 15.58 17.06 0.27 -23.77 16 4 C -0.16 -4.60 4.65 29.85 0.14 -4.46 16 5 C 0.11 3.37 2.67 44.97 0.12 3.49 16 6 H 0.07 2.18 7.55 -2.39 -0.02 2.16 16 7 C 0.06 1.34 6.24 72.08 0.45 1.79 16 8 O -0.39 -9.56 10.74 -148.98 -1.60 -11.16 16 9 C 0.06 1.28 6.99 72.08 0.50 1.79 16 10 C 0.06 1.69 6.11 86.36 0.53 2.22 16 11 N -0.61 -22.60 2.99 -793.53 -2.37 -24.97 16 12 C 0.53 24.60 6.13 87.66 0.54 25.14 16 13 O -0.56 -27.27 9.27 15.47 0.14 -27.12 16 14 C 0.03 1.36 1.81 -12.29 -0.02 1.34 16 15 H 0.02 1.33 7.81 -2.39 -0.02 1.31 16 16 C -0.13 -5.70 8.70 71.98 0.63 -5.08 16 17 C -0.52 -30.37 8.37 25.60 0.21 -30.15 16 18 H 0.05 3.04 6.80 -2.91 -0.02 3.02 16 19 C 0.02 0.97 5.26 84.65 0.45 1.41 16 20 N -0.91 -51.68 11.30 21.45 0.24 -51.44 16 21 Si 0.95 45.40 29.54 68.60 2.03 47.42 16 22 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 28 H 0.11 3.72 6.03 -2.43 -0.01 3.71 16 29 H 0.13 2.30 8.06 -2.39 -0.02 2.28 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.13 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.11 3.50 3.74 -2.39 -0.01 3.49 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.03 1.20 8.10 -2.38 -0.02 1.18 16 37 H 0.06 2.21 5.31 -2.39 -0.01 2.19 16 38 H 0.07 3.65 5.86 -2.38 -0.01 3.64 16 39 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -73.00 305.07 4.16 -68.85 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.05 Total: 15.64 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 4.40 Total: 6.56 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.13 Total: -76.41 kcal Atomic # 8 Polarization: -60.86 SS G_CDS: -1.19 Total: -62.05 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.00 4.16 -68.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613413297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.517 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds