Wall clock time and date at job start Mon Mar 30 2020 04:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20762 * 119.99591 * 2 1 4 4 C 1.50699 * 120.00284 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47094 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.71196 * 44.93491 * 5 4 2 7 7 C 1.53287 * 109.68067 * 165.47766 * 5 4 2 8 8 O 1.42970 * 109.26576 * 172.04764 * 7 5 4 9 9 C 1.42955 * 114.16603 * 297.39187 * 8 7 5 10 10 C 1.53297 * 109.22459 * 62.57909 * 9 8 7 11 11 N 1.47162 * 108.38373 * 307.69707 * 10 9 8 12 12 C 1.34770 * 120.98474 * 230.55351 * 11 10 9 13 13 O 1.21273 * 120.00403 * 173.59106 * 12 11 10 14 14 C 1.50707 * 119.99859 * 353.59501 * 12 11 10 15 15 H 1.09005 * 109.46724 * 319.55513 * 14 12 11 16 16 C 1.53001 * 109.47259 * 79.55523 * 14 12 11 17 17 C 1.50701 * 109.47066 * 199.56129 * 14 12 11 18 18 H 1.07995 * 119.99976 * 359.97438 * 17 14 12 19 19 C 1.37878 * 120.00101 * 180.02562 * 17 14 12 20 20 N 1.31512 * 119.99910 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00061 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47180 * 59.99794 * 21 19 17 23 23 H 1.48504 * 109.47085 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46913 * 299.99610 * 21 19 17 25 25 H 1.09002 * 109.46761 * 240.00126 * 1 2 3 26 26 H 1.09000 * 109.47040 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47020 * 120.00314 * 1 2 3 28 28 H 1.08998 * 109.47124 * 60.00314 * 4 2 1 29 29 H 1.08997 * 109.46774 * 299.99780 * 4 2 1 30 30 H 1.09002 * 109.51936 * 52.09464 * 7 5 4 31 31 H 1.09007 * 109.51247 * 291.99852 * 7 5 4 32 32 H 1.08999 * 109.51219 * 182.50079 * 9 8 7 33 33 H 1.09001 * 109.51552 * 302.65841 * 9 8 7 34 34 H 1.08994 * 109.68338 * 67.41998 * 10 9 8 35 35 H 1.09000 * 109.68549 * 187.94110 * 10 9 8 36 36 H 1.09001 * 109.46937 * 173.84489 * 16 14 12 37 37 H 1.08997 * 109.47042 * 293.84726 * 16 14 12 38 38 H 1.08997 * 109.46898 * 53.84686 * 16 14 12 39 39 H 0.96998 * 120.00548 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0254 0.0011 6 1 3.9932 -0.2439 0.7257 7 6 4.5276 -2.3046 0.3636 8 8 5.9287 -2.0859 0.1818 9 6 6.3057 -1.7958 -1.1662 10 6 5.6349 -0.4901 -1.6081 11 7 4.1915 -0.5966 -1.3416 12 6 3.2864 -0.3106 -2.2983 13 8 2.1078 -0.5149 -2.0987 14 6 3.7390 0.2630 -3.6164 15 1 4.5251 0.9978 -3.4421 16 6 4.2788 -0.8608 -4.5033 17 6 2.5730 0.9278 -4.3018 18 1 1.6015 0.9340 -3.8303 19 6 2.7465 1.5273 -5.5312 20 7 3.9295 1.5194 -6.1056 21 14 1.3011 2.3508 -6.3810 22 1 0.7771 3.4417 -5.5206 23 1 1.7468 2.9150 -7.6804 24 1 0.2303 1.3495 -6.6180 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.9973 -1.8770 -0.8892 29 1 1.9972 -1.8762 0.8908 30 1 4.1996 -3.1195 -0.2818 31 1 4.3314 -2.5630 1.4043 32 1 7.3886 -1.6870 -1.2260 33 1 5.9841 -2.6087 -1.8173 34 1 6.0514 0.3453 -1.0454 35 1 5.8014 -0.3341 -2.6739 36 1 4.5041 -0.4655 -5.4938 37 1 5.1869 -1.2692 -4.0599 38 1 3.5299 -1.6482 -4.5881 39 1 4.0517 1.9414 -6.9704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613413298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:15 Heat of formation + Delta-G solvation = -98.094026 kcal Electronic energy + Delta-G solvation = -22470.580078 eV Core-core repulsion = 19186.478149 eV Total energy + Delta-G solvation = -3284.101929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52146 -38.40578 -37.71340 -34.29412 -34.15556 -32.63681 -30.25527 -30.16889 -28.12114 -26.40351 -25.23218 -23.28017 -22.78633 -21.06692 -19.26164 -18.35032 -16.66364 -16.46854 -16.06604 -15.87979 -15.25424 -15.03754 -14.82051 -14.66300 -14.21859 -14.03372 -13.68856 -13.18841 -13.00402 -12.44879 -12.25907 -12.10382 -11.80101 -11.56375 -11.33526 -11.32109 -11.07598 -10.98706 -10.75919 -10.66902 -10.50961 -10.31095 -10.03629 -9.93984 -9.07227 -9.03700 -8.45589 -8.10105 -8.02932 -6.05101 -4.08245 2.67029 3.34613 3.36915 3.38012 3.46432 3.69558 3.84343 4.44650 4.50206 4.95993 5.01712 5.09315 5.22181 5.27883 5.35501 5.44317 5.52177 5.59304 5.68273 5.76311 5.77422 5.83406 6.01976 6.04134 6.10405 6.34936 6.49122 6.55524 6.78071 6.89967 7.00188 7.11845 7.38651 7.72720 7.93268 8.05687 8.24741 8.32755 8.97140 9.11477 9.56280 11.02277 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.007735 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.105129 B = 3618.992537 C = 4778.701028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.391 3.609 3 O -0.477 6.477 4 C -0.163 4.163 5 C 0.118 3.882 6 H 0.079 0.921 7 C 0.054 3.946 8 O -0.383 6.383 9 C 0.048 3.952 10 C 0.072 3.928 11 N -0.618 5.618 12 C 0.541 3.459 13 O -0.547 6.547 14 C 0.032 3.968 15 H 0.048 0.952 16 C -0.135 4.135 17 C -0.495 4.495 18 H 0.070 0.930 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.014 0.986 38 H 0.030 0.970 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -8.416 10.923 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.268 3.732 3 O -0.353 6.353 4 C -0.201 4.201 5 C 0.014 3.986 6 H 0.097 0.903 7 C -0.024 4.024 8 O -0.301 6.301 9 C -0.030 4.030 10 C -0.051 4.051 11 N -0.354 5.354 12 C 0.335 3.665 13 O -0.427 6.427 14 C 0.011 3.989 15 H 0.065 0.935 16 C -0.192 4.192 17 C -0.534 4.534 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.536 5.536 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.144 0.856 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.033 0.967 38 H 0.049 0.951 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.590 -7.910 10.994 13.637 hybrid contribution -0.874 0.431 -0.753 1.231 sum 0.716 -7.479 10.242 12.702 Atomic orbital electron populations 1.22177 0.95431 1.04030 1.03495 1.23756 0.91339 0.89720 0.68337 1.90382 1.71687 1.35012 1.38267 1.22494 0.93591 0.99615 1.04380 1.21684 0.94120 0.96579 0.86174 0.90311 1.23026 0.81472 0.96000 1.01899 1.87911 1.23226 1.91143 1.27797 1.23021 1.00110 0.96356 0.83466 1.22472 0.80823 0.97826 1.03994 1.48295 1.06442 1.69207 1.11437 1.21906 0.84943 0.73856 0.85776 1.90304 1.18453 1.53863 1.80035 1.18882 0.98549 0.94619 0.86895 0.93463 1.21814 0.96442 0.97011 1.03983 1.21010 0.95455 1.33848 1.03055 0.91219 1.24928 0.96039 0.96120 0.97126 1.69838 1.21872 1.44842 1.17055 0.86513 0.82517 0.79767 0.78403 1.20224 1.21305 1.20201 0.90499 0.90893 0.88873 0.85568 0.90757 0.92657 0.88210 0.87825 0.92581 0.91230 0.87215 0.88435 0.96669 0.95100 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 10.24 36.00 0.37 -2.48 16 2 C 0.39 7.06 4.48 -29.04 -0.13 6.93 16 3 O -0.48 -10.62 15.53 -13.70 -0.21 -10.83 16 4 C -0.16 -2.49 4.66 -27.88 -0.13 -2.62 16 5 C 0.12 1.89 2.67 -67.36 -0.18 1.71 16 6 H 0.08 1.34 7.57 -51.93 -0.39 0.95 16 7 C 0.05 0.69 6.23 37.31 0.23 0.92 16 8 O -0.38 -5.34 10.74 -35.23 -0.38 -5.72 16 9 C 0.05 0.62 6.98 37.31 0.26 0.88 16 10 C 0.07 1.14 6.11 -3.53 -0.02 1.12 16 11 N -0.62 -11.51 2.99 -164.65 -0.49 -12.00 16 12 C 0.54 12.22 6.00 -10.99 -0.07 12.16 16 13 O -0.55 -12.87 9.42 -14.13 -0.13 -13.01 16 14 C 0.03 0.78 1.78 -92.92 -0.17 0.62 16 15 H 0.05 1.24 7.24 -51.93 -0.38 0.86 16 16 C -0.13 -3.07 8.76 37.16 0.33 -2.74 16 17 C -0.50 -14.03 8.35 -34.44 -0.29 -14.31 16 18 H 0.07 2.08 6.93 -52.49 -0.36 1.71 16 19 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 20 N -0.90 -25.10 11.29 55.43 0.63 -24.48 16 21 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.13 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.11 1.82 4.41 -51.93 -0.23 1.59 16 36 H 0.10 2.46 5.93 -51.93 -0.31 2.15 16 37 H 0.01 0.28 6.27 -51.93 -0.33 -0.04 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -32.40 306.42 -6.55 -38.95 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.67 Total: 1.83 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 0.11 Total: 3.71 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.13 Total: -36.47 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.72 Total: -29.55 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.40 -6.55 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613413298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.144 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds