Wall clock time and date at job start Mon Mar 30 2020 04:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20762 * 119.99591 * 2 1 4 4 C 1.50699 * 120.00284 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47094 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.71196 * 44.93491 * 5 4 2 7 7 C 1.53287 * 109.68067 * 165.47766 * 5 4 2 8 8 O 1.42970 * 109.26576 * 172.04764 * 7 5 4 9 9 C 1.42955 * 114.16603 * 297.39187 * 8 7 5 10 10 C 1.53297 * 109.22459 * 62.57909 * 9 8 7 11 11 N 1.47162 * 108.38373 * 307.69707 * 10 9 8 12 12 C 1.34770 * 120.98474 * 230.55351 * 11 10 9 13 13 O 1.21273 * 120.00403 * 173.59106 * 12 11 10 14 14 C 1.50707 * 119.99859 * 353.59501 * 12 11 10 15 15 H 1.09005 * 109.46724 * 319.55513 * 14 12 11 16 16 C 1.53001 * 109.47259 * 79.55523 * 14 12 11 17 17 C 1.50701 * 109.47066 * 199.56129 * 14 12 11 18 18 H 1.07995 * 119.99976 * 359.97438 * 17 14 12 19 19 C 1.37878 * 120.00101 * 180.02562 * 17 14 12 20 20 N 1.31512 * 119.99910 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00061 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47180 * 59.99794 * 21 19 17 23 23 H 1.48504 * 109.47085 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46913 * 299.99610 * 21 19 17 25 25 H 1.09002 * 109.46761 * 240.00126 * 1 2 3 26 26 H 1.09000 * 109.47040 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47020 * 120.00314 * 1 2 3 28 28 H 1.08998 * 109.47124 * 60.00314 * 4 2 1 29 29 H 1.08997 * 109.46774 * 299.99780 * 4 2 1 30 30 H 1.09002 * 109.51936 * 52.09464 * 7 5 4 31 31 H 1.09007 * 109.51247 * 291.99852 * 7 5 4 32 32 H 1.08999 * 109.51219 * 182.50079 * 9 8 7 33 33 H 1.09001 * 109.51552 * 302.65841 * 9 8 7 34 34 H 1.08994 * 109.68338 * 67.41998 * 10 9 8 35 35 H 1.09000 * 109.68549 * 187.94110 * 10 9 8 36 36 H 1.09001 * 109.46937 * 173.84489 * 16 14 12 37 37 H 1.08997 * 109.47042 * 293.84726 * 16 14 12 38 38 H 1.08997 * 109.46898 * 53.84686 * 16 14 12 39 39 H 0.96998 * 120.00548 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7648 -1.0254 0.0011 6 1 3.9932 -0.2439 0.7257 7 6 4.5276 -2.3046 0.3636 8 8 5.9287 -2.0859 0.1818 9 6 6.3057 -1.7958 -1.1662 10 6 5.6349 -0.4901 -1.6081 11 7 4.1915 -0.5966 -1.3416 12 6 3.2864 -0.3106 -2.2983 13 8 2.1078 -0.5149 -2.0987 14 6 3.7390 0.2630 -3.6164 15 1 4.5251 0.9978 -3.4421 16 6 4.2788 -0.8608 -4.5033 17 6 2.5730 0.9278 -4.3018 18 1 1.6015 0.9340 -3.8303 19 6 2.7465 1.5273 -5.5312 20 7 3.9295 1.5194 -6.1056 21 14 1.3011 2.3508 -6.3810 22 1 0.7771 3.4417 -5.5206 23 1 1.7468 2.9150 -7.6804 24 1 0.2303 1.3495 -6.6180 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.9973 -1.8770 -0.8892 29 1 1.9972 -1.8762 0.8908 30 1 4.1996 -3.1195 -0.2818 31 1 4.3314 -2.5630 1.4043 32 1 7.3886 -1.6870 -1.2260 33 1 5.9841 -2.6087 -1.8173 34 1 6.0514 0.3453 -1.0454 35 1 5.8014 -0.3341 -2.6739 36 1 4.5041 -0.4655 -5.4938 37 1 5.1869 -1.2692 -4.0599 38 1 3.5299 -1.6482 -4.5881 39 1 4.0517 1.9414 -6.9704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613413298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:14 Heat of formation + Delta-G solvation = -119.455292 kcal Electronic energy + Delta-G solvation = -22471.506372 eV Core-core repulsion = 19186.478149 eV Total energy + Delta-G solvation = -3285.028223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.95421 -39.75787 -39.18450 -36.03624 -35.69433 -34.14581 -32.13131 -31.42950 -29.40893 -27.56964 -27.30437 -24.82295 -24.13479 -22.54468 -20.65090 -19.88696 -18.42782 -18.08158 -17.39833 -17.27039 -16.73892 -16.52970 -16.19446 -16.04408 -15.64854 -15.58949 -15.15906 -14.73556 -14.66003 -14.15965 -13.50754 -13.34530 -13.27205 -12.99480 -12.89330 -12.83235 -12.76028 -12.61617 -12.30525 -12.29234 -12.20652 -11.99070 -11.75067 -11.16343 -11.11084 -10.57210 -10.47868 -9.76624 -9.43540 -8.18180 -6.28483 1.23898 1.36981 1.38569 1.46668 1.97639 2.06404 2.41420 2.83347 3.11064 3.29959 3.71306 3.83664 3.98674 4.09064 4.19512 4.25136 4.33791 4.38303 4.54195 4.61066 4.64460 4.69381 4.72220 4.79959 4.83649 4.85852 4.95954 5.01008 5.11344 5.27438 5.39807 5.63148 5.70213 5.92927 6.08850 6.16667 6.51216 6.77375 6.88464 7.35499 7.44999 8.87321 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.007735 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.105129 B = 3618.992537 C = 4778.701028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.380 3.620 3 O -0.531 6.531 4 C -0.159 4.159 5 C 0.112 3.888 6 H 0.066 0.934 7 C 0.060 3.940 8 O -0.388 6.388 9 C 0.056 3.944 10 C 0.064 3.936 11 N -0.616 5.616 12 C 0.536 3.464 13 O -0.566 6.566 14 C 0.028 3.972 15 H 0.026 0.974 16 C -0.119 4.119 17 C -0.522 4.522 18 H 0.045 0.955 19 C 0.019 3.981 20 N -0.910 5.910 21 Si 0.954 3.046 22 H -0.281 1.281 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.123 0.877 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.024 0.976 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 -10.184 12.113 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.261 3.739 3 O -0.411 6.411 4 C -0.196 4.196 5 C 0.009 3.991 6 H 0.084 0.916 7 C -0.017 4.017 8 O -0.307 6.307 9 C -0.021 4.021 10 C -0.058 4.058 11 N -0.350 5.350 12 C 0.328 3.672 13 O -0.447 6.447 14 C 0.007 3.993 15 H 0.044 0.956 16 C -0.177 4.177 17 C -0.560 4.560 18 H 0.063 0.937 19 C -0.180 4.180 20 N -0.550 5.550 21 Si 0.779 3.221 22 H -0.207 1.207 23 H -0.198 1.198 24 H -0.198 1.198 25 H 0.141 0.859 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.839 -9.708 12.202 15.701 hybrid contribution -0.930 1.008 -1.066 1.737 sum 0.908 -8.701 11.135 14.160 Atomic orbital electron populations 1.22190 0.93339 1.03878 1.05399 1.24587 0.93000 0.90080 0.66206 1.90363 1.72933 1.36943 1.40881 1.22434 0.92760 0.98285 1.06128 1.21953 0.95278 0.97920 0.83987 0.91635 1.23132 0.80436 0.93971 1.04141 1.87917 1.23754 1.90896 1.28085 1.23075 1.01470 0.94359 0.83214 1.22674 0.79613 1.00057 1.03485 1.48258 1.06988 1.67935 1.11832 1.21385 0.85268 0.74540 0.85998 1.90295 1.19101 1.54774 1.80569 1.18770 0.96804 0.94808 0.88920 0.95604 1.21599 0.97693 0.96005 1.02435 1.21164 0.95611 1.35328 1.03908 0.93679 1.25579 0.98403 0.96490 0.97539 1.69923 1.22935 1.44866 1.17240 0.85682 0.79891 0.78718 0.77781 1.20674 1.19787 1.19795 0.85891 0.92191 0.89322 0.86857 0.85513 0.91797 0.84723 0.84831 0.92011 0.91208 0.88420 0.90889 0.93119 0.95647 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.44 10.24 71.24 0.73 -4.71 16 2 C 0.38 13.58 4.48 29.10 0.13 13.71 16 3 O -0.53 -24.25 15.53 17.38 0.27 -23.98 16 4 C -0.16 -4.53 4.66 29.85 0.14 -4.40 16 5 C 0.11 3.37 2.67 44.94 0.12 3.49 16 6 H 0.07 2.17 7.57 -2.39 -0.02 2.16 16 7 C 0.06 1.33 6.23 72.08 0.45 1.78 16 8 O -0.39 -9.51 10.74 -148.98 -1.60 -11.11 16 9 C 0.06 1.29 6.98 72.08 0.50 1.80 16 10 C 0.06 1.99 6.11 86.35 0.53 2.51 16 11 N -0.62 -22.69 2.99 -793.24 -2.37 -25.06 16 12 C 0.54 24.64 6.00 87.66 0.53 25.16 16 13 O -0.57 -27.20 9.42 15.82 0.15 -27.05 16 14 C 0.03 1.44 1.78 -12.28 -0.02 1.42 16 15 H 0.03 1.42 7.24 -2.38 -0.02 1.40 16 16 C -0.12 -5.49 8.76 71.98 0.63 -4.86 16 17 C -0.52 -30.57 8.35 25.60 0.21 -30.36 16 18 H 0.04 2.81 6.93 -2.91 -0.02 2.79 16 19 C 0.02 1.08 5.29 84.66 0.45 1.52 16 20 N -0.91 -51.67 11.29 21.45 0.24 -51.43 16 21 Si 0.95 45.57 29.54 68.60 2.03 47.59 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 25 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 27 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.11 3.66 6.07 -2.39 -0.01 3.65 16 29 H 0.13 2.27 8.07 -2.39 -0.02 2.25 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.10 3.22 4.41 -2.39 -0.01 3.21 16 36 H 0.07 3.73 5.93 -2.39 -0.01 3.72 16 37 H 0.05 1.91 6.27 -2.39 -0.01 1.89 16 38 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -73.13 306.42 4.16 -68.97 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.05 Total: 14.98 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.40 Total: 7.08 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.13 Total: -76.49 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: -1.18 Total: -62.14 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.13 4.16 -68.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613413298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.481 kcal (2) G-P(sol) polarization free energy of solvation -73.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds