Wall clock time and date at job start Mon Mar 30 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48498 * 109.47031 * 239.99566 * 3 2 1 5 5 H 1.48500 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47402 * 119.99519 * 3 2 1 7 7 C 1.37879 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99852 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99846 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00141 * 0.02562 * 11 10 9 13 13 C 1.50708 * 120.00071 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47142 * 180.02562 * 13 11 10 15 15 C 1.46850 * 110.99568 * 293.94945 * 14 13 11 16 16 C 1.53398 * 107.98463 * 176.62977 * 15 14 13 17 17 O 1.42614 * 108.23270 * 60.92523 * 16 15 14 18 18 C 1.42900 * 115.53713 * 299.50068 * 17 16 15 19 19 H 1.09002 * 111.94729 * 285.11344 * 18 17 16 20 20 C 1.55083 * 106.72300 * 161.99730 * 18 17 16 21 21 N 1.48480 * 106.58259 * 266.30244 * 20 18 17 22 22 C 1.48108 * 108.68465 * 0.60560 * 21 20 18 23 23 C 1.44031 * 111.20665 * 167.05408 * 14 13 11 24 24 H 1.09002 * 109.59802 * 298.46101 * 23 14 13 25 25 H 0.97001 * 120.00220 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47421 * 59.99532 * 9 7 2 27 27 H 1.08995 * 109.47291 * 299.99183 * 9 7 2 28 28 H 0.96997 * 120.00207 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.47132 * 60.00031 * 13 11 10 30 30 H 1.09005 * 109.46749 * 300.00434 * 13 11 10 31 31 H 1.08997 * 109.75951 * 57.00744 * 15 14 13 32 32 H 1.09001 * 109.75975 * 296.25283 * 15 14 13 33 33 H 1.08995 * 109.71552 * 301.23382 * 16 15 14 34 34 H 1.09005 * 109.71004 * 180.60396 * 16 15 14 35 35 H 1.09007 * 109.91275 * 26.10620 * 20 18 17 36 36 H 1.09002 * 109.91227 * 147.38757 * 20 18 17 37 37 H 1.00897 * 111.38651 * 238.00986 * 21 20 18 38 38 H 1.09002 * 110.46527 * 217.32658 * 22 21 20 39 39 H 1.09004 * 110.46825 * 94.74392 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0011 13 6 2.7333 -6.0288 0.0016 14 7 1.9988 -7.3010 0.0015 15 6 1.2533 -7.4782 1.2542 16 6 0.4487 -8.7798 1.1464 17 8 1.3654 -9.8575 0.9671 18 6 2.1831 -9.7825 -0.2024 19 1 1.6244 -10.0250 -1.1064 20 6 3.3765 -10.7464 0.0251 21 7 4.4791 -9.9294 0.5920 22 6 4.0103 -8.5314 0.7317 23 6 2.8718 -8.4065 -0.2988 24 1 3.2961 -8.2773 -1.2944 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8903 28 1 3.1568 -3.4354 0.0009 29 1 3.3599 -5.9706 0.8916 30 1 3.3601 -5.9713 -0.8883 31 1 0.5757 -6.6373 1.4018 32 1 1.9488 -7.5431 2.0910 33 1 -0.2262 -8.7252 0.2923 34 1 -0.1255 -8.9338 2.0601 35 1 3.0892 -11.5355 0.7200 36 1 3.6895 -11.1803 -0.9246 37 1 5.3063 -9.9775 0.0163 38 1 4.8148 -7.8344 0.4970 39 1 3.6335 -8.3546 1.7391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686538753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:11 Heat of formation + Delta-G solvation = -59.948886 kcal Electronic energy + Delta-G solvation = -21138.410039 eV Core-core repulsion = 17888.254958 eV Total energy + Delta-G solvation = -3250.155080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.78642 -38.74111 -36.31901 -35.68025 -34.13934 -32.36901 -30.38617 -29.23897 -28.48074 -27.11644 -24.89532 -23.54242 -22.51171 -21.61755 -19.75639 -19.32302 -17.39898 -17.18110 -16.58809 -16.47454 -15.61783 -15.28307 -15.14789 -14.77623 -14.56212 -14.36213 -13.94359 -13.49677 -13.15710 -13.01316 -12.66914 -12.36893 -12.24473 -11.96159 -11.82254 -11.58350 -11.56190 -11.22483 -11.01444 -10.86529 -10.43295 -10.33814 -9.82122 -9.44225 -9.13850 -8.90678 -8.75483 -8.08194 -7.89357 -6.19201 -4.26500 3.23168 3.27728 3.29161 3.30994 3.38018 3.60260 3.95954 4.21289 4.33973 4.38182 4.55645 4.67640 4.94249 5.05183 5.07394 5.16692 5.20546 5.32398 5.36073 5.40646 5.45857 5.52297 5.53912 5.65183 5.75470 5.99572 6.05227 6.42370 6.82526 7.01480 7.08906 7.18670 7.28499 7.40431 7.48672 7.63793 7.94215 8.58963 8.75348 9.07153 9.40275 10.90905 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042902 B = 0.003606 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.491561 B = 7762.109043 C = 8219.208075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.714 5.714 11 C 0.499 3.501 12 O -0.539 6.539 13 C 0.040 3.960 14 N -0.515 5.515 15 C 0.017 3.983 16 C 0.067 3.933 17 O -0.379 6.379 18 C 0.081 3.919 19 H 0.084 0.916 20 C 0.054 3.946 21 N -0.682 5.682 22 C 0.017 3.983 23 C 0.034 3.966 24 H 0.091 0.909 25 H 0.267 0.733 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.390 0.610 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.339 0.661 38 H 0.070 0.930 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -18.462 -0.239 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.363 5.363 11 C 0.283 3.717 12 O -0.417 6.417 13 C -0.091 4.091 14 N -0.239 5.239 15 C -0.110 4.110 16 C -0.009 4.009 17 O -0.298 6.298 18 C 0.022 3.978 19 H 0.101 0.899 20 C -0.075 4.075 21 N -0.311 5.311 22 C -0.114 4.114 23 C -0.077 4.077 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.222 0.778 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.088 0.912 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.840 -18.788 0.211 19.995 hybrid contribution 1.508 1.655 -0.562 2.308 sum 8.348 -17.133 -0.351 19.062 Atomic orbital electron populations 1.69963 1.06114 1.27458 1.48723 1.24952 0.94916 0.99454 0.94659 0.86470 0.79420 0.82304 0.78691 1.20063 1.21044 1.20059 1.21188 0.93218 0.90485 1.53448 0.91971 1.19086 0.88247 0.81851 0.97714 1.46454 1.11110 1.06064 1.72636 1.20250 0.89514 0.84060 0.77913 1.90623 1.16627 1.84502 1.49955 1.21982 0.95429 0.89023 1.02656 1.59994 1.27611 1.00221 1.36053 1.23000 0.98093 1.00705 0.89158 1.22672 0.91124 0.84972 1.02176 1.87792 1.52646 1.46207 1.43166 1.23354 0.91538 0.93568 0.89386 0.89865 1.23074 0.88873 0.96392 0.99147 1.61723 1.06542 1.09065 1.53750 1.23479 0.97466 0.89584 1.00846 1.22914 0.92995 0.91958 0.99866 0.89069 0.92357 0.95525 0.95582 0.77818 0.92072 0.88425 0.86993 0.94161 0.91967 0.88279 0.89067 0.91633 0.84544 0.91186 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 10 N -0.71 -14.56 5.55 -61.47 -0.34 -14.90 16 11 C 0.50 9.59 7.53 -10.98 -0.08 9.51 16 12 O -0.54 -12.48 14.33 5.56 0.08 -12.40 16 13 C 0.04 0.55 4.90 -4.97 -0.02 0.53 16 14 N -0.52 -7.17 4.23 -228.64 -0.97 -8.14 16 15 C 0.02 0.25 5.13 -3.65 -0.02 0.23 16 16 C 0.07 0.85 7.05 37.36 0.26 1.12 16 17 O -0.38 -4.88 10.03 -35.23 -0.35 -5.23 16 18 C 0.08 0.88 4.07 -25.02 -0.10 0.78 16 19 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 20 C 0.05 0.49 7.34 -1.85 -0.01 0.48 16 21 N -0.68 -6.46 7.41 -109.83 -0.81 -7.27 16 22 C 0.02 0.18 5.93 -2.60 -0.02 0.16 16 23 C 0.03 0.38 2.76 -68.07 -0.19 0.20 16 24 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 29 H 0.06 0.75 7.64 -51.93 -0.40 0.35 16 30 H 0.10 1.15 8.01 -51.93 -0.42 0.73 16 31 H 0.11 1.89 5.86 -51.93 -0.30 1.59 16 32 H 0.04 0.55 6.60 -51.93 -0.34 0.21 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.89 7.99 -51.93 -0.41 0.48 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.34 2.47 8.93 -39.29 -0.35 2.12 16 38 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.08 1.01 6.41 -51.93 -0.33 0.68 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -32.07 311.30 -8.42 -40.49 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.81 Total: 6.03 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.63 Total: 6.27 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -1.39 Total: -55.48 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.27 Total: -17.63 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.07 -8.42 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686538753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.457 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds