Wall clock time and date at job start Mon Mar 30 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48498 * 109.47031 * 239.99566 * 3 2 1 5 5 H 1.48500 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47402 * 119.99519 * 3 2 1 7 7 C 1.37879 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99852 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99846 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00141 * 0.02562 * 11 10 9 13 13 C 1.50708 * 120.00071 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47142 * 180.02562 * 13 11 10 15 15 C 1.46850 * 110.99568 * 293.94945 * 14 13 11 16 16 C 1.53398 * 107.98463 * 176.62977 * 15 14 13 17 17 O 1.42614 * 108.23270 * 60.92523 * 16 15 14 18 18 C 1.42900 * 115.53713 * 299.50068 * 17 16 15 19 19 H 1.09002 * 111.94729 * 285.11344 * 18 17 16 20 20 C 1.55083 * 106.72300 * 161.99730 * 18 17 16 21 21 N 1.48480 * 106.58259 * 266.30244 * 20 18 17 22 22 C 1.48108 * 108.68465 * 0.60560 * 21 20 18 23 23 C 1.44031 * 111.20665 * 167.05408 * 14 13 11 24 24 H 1.09002 * 109.59802 * 298.46101 * 23 14 13 25 25 H 0.97001 * 120.00220 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47421 * 59.99532 * 9 7 2 27 27 H 1.08995 * 109.47291 * 299.99183 * 9 7 2 28 28 H 0.96997 * 120.00207 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.47132 * 60.00031 * 13 11 10 30 30 H 1.09005 * 109.46749 * 300.00434 * 13 11 10 31 31 H 1.08997 * 109.75951 * 57.00744 * 15 14 13 32 32 H 1.09001 * 109.75975 * 296.25283 * 15 14 13 33 33 H 1.08995 * 109.71552 * 301.23382 * 16 15 14 34 34 H 1.09005 * 109.71004 * 180.60396 * 16 15 14 35 35 H 1.09007 * 109.91275 * 26.10620 * 20 18 17 36 36 H 1.09002 * 109.91227 * 147.38757 * 20 18 17 37 37 H 1.00897 * 111.38651 * 238.00986 * 21 20 18 38 38 H 1.09002 * 110.46527 * 217.32658 * 22 21 20 39 39 H 1.09004 * 110.46825 * 94.74392 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1050 0.0011 13 6 2.7333 -6.0288 0.0016 14 7 1.9988 -7.3010 0.0015 15 6 1.2533 -7.4782 1.2542 16 6 0.4487 -8.7798 1.1464 17 8 1.3654 -9.8575 0.9671 18 6 2.1831 -9.7825 -0.2024 19 1 1.6244 -10.0250 -1.1064 20 6 3.3765 -10.7464 0.0251 21 7 4.4791 -9.9294 0.5920 22 6 4.0103 -8.5314 0.7317 23 6 2.8718 -8.4065 -0.2988 24 1 3.2961 -8.2773 -1.2944 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8903 28 1 3.1568 -3.4354 0.0009 29 1 3.3599 -5.9706 0.8916 30 1 3.3601 -5.9713 -0.8883 31 1 0.5757 -6.6373 1.4018 32 1 1.9488 -7.5431 2.0910 33 1 -0.2262 -8.7252 0.2923 34 1 -0.1255 -8.9338 2.0601 35 1 3.0892 -11.5355 0.7200 36 1 3.6895 -11.1803 -0.9246 37 1 5.3063 -9.9775 0.0163 38 1 4.8148 -7.8344 0.4970 39 1 3.6335 -8.3546 1.7391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686538753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:11 Heat of formation + Delta-G solvation = -88.392755 kcal Electronic energy + Delta-G solvation = -21139.643457 eV Core-core repulsion = 17888.254958 eV Total energy + Delta-G solvation = -3251.388499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77722 -40.26583 -37.19988 -36.83050 -35.98422 -34.35109 -31.37822 -30.55974 -29.28811 -28.82751 -26.17869 -24.53783 -24.31726 -22.52704 -21.35197 -20.31706 -18.97371 -18.11135 -17.89368 -17.49014 -17.20061 -16.76828 -16.55334 -16.20952 -15.79099 -15.43724 -15.22801 -14.74175 -14.50147 -14.14317 -14.02200 -13.79759 -13.58922 -13.26762 -12.93073 -12.90755 -12.71711 -12.54127 -12.46745 -12.33414 -12.22171 -11.51206 -11.37475 -10.94896 -10.79054 -10.48348 -9.87030 -9.77882 -9.01262 -8.29270 -6.46028 1.43096 1.46970 1.55176 1.77307 2.18068 2.40027 2.69503 2.85605 3.05624 3.29403 3.52199 3.72371 3.84235 3.88565 4.07672 4.13813 4.22053 4.29104 4.33707 4.41468 4.51887 4.58605 4.66546 4.79086 4.86777 5.00106 5.05681 5.11459 5.24624 5.48602 5.67892 5.68504 5.79678 5.85483 6.09116 6.20627 6.50742 6.65109 6.93723 7.23663 7.51881 8.82626 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042902 B = 0.003606 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.491561 B = 7762.109043 C = 8219.208075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.495 3.505 12 O -0.583 6.583 13 C 0.055 3.945 14 N -0.533 5.533 15 C 0.022 3.978 16 C 0.072 3.928 17 O -0.390 6.390 18 C 0.070 3.930 19 H 0.090 0.910 20 C 0.060 3.940 21 N -0.689 5.689 22 C 0.024 3.976 23 C 0.035 3.965 24 H 0.110 0.890 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.014 1.014 28 H 0.408 0.592 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.354 0.646 38 H 0.089 0.911 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.436 -18.986 -0.789 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.359 5.359 11 C 0.281 3.719 12 O -0.464 6.464 13 C -0.075 4.075 14 N -0.256 5.256 15 C -0.105 4.105 16 C -0.005 4.005 17 O -0.309 6.309 18 C 0.011 3.989 19 H 0.107 0.893 20 C -0.069 4.069 21 N -0.320 5.320 22 C -0.107 4.107 23 C -0.076 4.076 24 H 0.127 0.873 25 H 0.077 0.923 26 H 0.004 0.996 27 H 0.004 0.996 28 H 0.244 0.756 29 H 0.104 0.896 30 H 0.148 0.852 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.172 0.828 38 H 0.107 0.893 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.012 -19.357 -0.346 21.795 hybrid contribution 0.498 1.718 -0.398 1.832 sum 10.510 -17.639 -0.744 20.546 Atomic orbital electron populations 1.70133 1.08293 1.28617 1.49954 1.26067 0.95754 1.03917 0.93865 0.85216 0.77913 0.76632 0.79518 1.18608 1.21205 1.18647 1.21605 0.94336 0.90610 1.52929 0.89751 1.18495 0.88653 0.84288 0.93969 1.46170 1.11175 1.05458 1.73126 1.21285 0.89960 0.84716 0.75917 1.90613 1.19173 1.85154 1.51451 1.21900 0.93785 0.86569 1.05257 1.59928 1.28772 1.01109 1.35836 1.22829 0.97855 1.00048 0.89791 1.22611 0.90932 0.84503 1.02430 1.87789 1.52842 1.45968 1.44272 1.23630 0.92063 0.94167 0.89004 0.89256 1.23055 0.87911 0.95558 1.00330 1.61633 1.07234 1.08480 1.54650 1.23349 0.97560 0.90603 0.99190 1.23011 0.92818 0.90816 1.00976 0.87254 0.92271 0.99598 0.99576 0.75633 0.89632 0.85192 0.90362 0.93759 0.92986 0.87026 0.90046 0.88691 0.82838 0.89273 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.98 41.88 29.54 68.60 2.03 43.91 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 7 C -0.56 -29.95 9.28 25.60 0.24 -29.71 16 8 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.61 5.43 85.63 0.46 15.08 16 10 N -0.71 -29.01 5.55 -466.79 -2.59 -31.60 16 11 C 0.49 19.12 7.53 87.66 0.66 19.78 16 12 O -0.58 -28.20 14.33 -3.04 -0.04 -28.24 16 13 C 0.06 1.41 4.90 85.56 0.42 1.83 16 14 N -0.53 -14.14 4.23 -877.29 -3.71 -17.86 16 15 C 0.02 0.64 5.13 86.45 0.44 1.08 16 16 C 0.07 1.84 7.05 72.12 0.51 2.35 16 17 O -0.39 -9.67 10.03 -148.98 -1.49 -11.17 16 18 C 0.07 1.39 4.07 31.70 0.13 1.52 16 19 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 20 C 0.06 0.92 7.34 86.71 0.64 1.56 16 21 N -0.69 -10.94 7.41 -501.41 -3.71 -14.65 16 22 C 0.02 0.43 5.93 86.43 0.51 0.95 16 23 C 0.03 0.68 2.76 46.21 0.13 0.81 16 24 H 0.11 1.80 8.11 -2.39 -0.02 1.78 16 25 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 26 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 28 H 0.41 13.51 8.32 -92.71 -0.77 12.74 16 29 H 0.09 1.84 7.64 -2.39 -0.02 1.82 16 30 H 0.13 2.55 8.01 -2.38 -0.02 2.53 16 31 H 0.08 2.79 5.86 -2.39 -0.01 2.77 16 32 H 0.04 1.21 6.60 -2.39 -0.02 1.19 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.08 1.43 7.99 -2.38 -0.02 1.41 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.35 3.83 8.93 -89.70 -0.80 3.03 16 38 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 39 H 0.06 1.33 6.41 -2.38 -0.02 1.32 16 Total: -1.00 -72.60 311.30 -5.14 -77.74 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.50 Total: 21.76 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 4.60 Total: 15.89 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -9.73 Total: -119.89 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.54 Total: -39.41 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -72.60 -5.14 -77.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686538753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.649 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds