Wall clock time and date at job start Mon Mar 30 2020 05:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 N 1.46903 * 109.46752 * 119.99128 * 2 1 3 5 5 C 1.46903 * 110.99702 * 147.74694 * 4 2 1 6 6 C 1.50704 * 109.47207 * 288.61482 * 5 4 2 7 7 H 1.08001 * 119.99940 * 4.96681 * 6 5 4 8 8 C 1.37875 * 120.00035 * 184.96863 * 6 5 4 9 9 N 1.31515 * 119.99623 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00004 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47261 * 60.00019 * 10 8 6 12 12 H 1.48503 * 109.47020 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47288 * 299.99662 * 10 8 6 14 14 C 1.46899 * 111.00255 * 271.70480 * 4 2 1 15 15 C 1.52998 * 109.47283 * 71.44558 * 14 4 2 16 16 N 1.46501 * 109.46846 * 174.11628 * 15 14 4 17 17 C 1.34764 * 124.17799 * 270.01532 * 16 15 14 18 18 O 1.21233 * 127.16289 * 359.93197 * 17 16 15 19 19 C 1.51591 * 105.68261 * 179.74859 * 17 16 15 20 20 N 1.47315 * 103.59249 * 0.33347 * 19 17 16 21 21 C 1.33794 * 124.17620 * 89.98296 * 16 15 14 22 22 O 1.21540 * 123.76797 * 0.02562 * 21 16 15 23 23 H 1.08997 * 109.47203 * 306.20768 * 1 2 3 24 24 H 1.09006 * 109.46551 * 66.20600 * 1 2 3 25 25 H 1.08994 * 109.47166 * 186.19833 * 1 2 3 26 26 H 1.08998 * 109.47449 * 239.99643 * 2 1 3 27 27 H 1.09000 * 109.47278 * 183.35536 * 3 2 1 28 28 H 1.09011 * 109.46813 * 303.35440 * 3 2 1 29 29 H 1.08993 * 109.47298 * 63.34959 * 3 2 1 30 30 H 1.08992 * 109.46841 * 48.61529 * 5 4 2 31 31 H 1.08998 * 109.46776 * 168.61466 * 5 4 2 32 32 H 0.97001 * 119.99971 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46667 * 311.44552 * 14 4 2 34 34 H 1.09003 * 109.46907 * 191.45017 * 14 4 2 35 35 H 1.09004 * 109.46749 * 54.11975 * 15 14 4 36 36 H 1.08991 * 109.47381 * 294.11751 * 15 14 4 37 37 H 1.08998 * 110.69147 * 241.76148 * 19 17 16 38 38 H 1.08995 * 110.50521 * 118.81918 * 19 17 16 39 39 H 0.96998 * 126.68934 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6923 1.1996 5 6 3.2886 -1.3811 0.9288 6 6 3.0336 -2.5753 0.0456 7 1 2.0437 -2.7547 -0.3474 8 6 4.0638 -3.4388 -0.2608 9 7 5.2693 -3.2200 0.2174 10 14 3.7475 -4.9193 -1.3549 11 1 3.2583 -4.4603 -2.6797 12 1 5.0088 -5.6831 -1.5311 13 1 2.7242 -5.7913 -0.7242 14 6 2.1567 0.2400 2.3265 15 6 0.7681 0.6443 2.8257 16 7 0.9024 1.4607 4.0347 17 6 0.9292 0.9615 5.2862 18 8 0.8487 -0.2035 5.6118 19 6 1.0858 2.1594 6.2019 20 7 1.1252 3.3023 5.2732 21 6 1.0142 2.7940 4.0326 22 8 1.0156 3.4702 3.0228 23 1 -0.3633 0.6070 0.8292 24 1 -0.3633 0.4146 -0.9404 25 1 -0.3633 -1.0216 0.1110 26 1 1.8935 -0.5139 -0.8899 27 1 3.1284 1.4432 -0.0601 28 1 1.6284 1.9734 -0.8585 29 1 1.7266 1.9387 0.9184 30 1 3.9731 -0.6974 0.4267 31 1 3.7301 -1.7121 1.8688 32 1 5.9942 -3.8272 0.0016 33 1 2.6980 1.1278 1.9997 34 1 2.7063 -0.2441 3.1338 35 1 0.1893 -0.2507 3.0541 36 1 0.2577 1.2198 2.0535 37 1 2.0151 2.0928 6.7677 38 1 0.2315 2.2405 6.8739 39 1 1.2179 4.2384 5.5098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686615164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:33 Heat of formation + Delta-G solvation = -25.155528 kcal Electronic energy + Delta-G solvation = -21524.077867 eV Core-core repulsion = 18275.431540 eV Total energy + Delta-G solvation = -3248.646327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.35745 -38.59047 -38.15322 -36.14767 -34.75927 -32.82248 -30.99204 -29.53078 -27.81718 -26.82858 -25.96329 -23.17948 -22.77373 -21.98141 -20.29177 -18.99099 -18.09193 -17.08427 -16.86998 -16.16320 -15.72653 -15.38503 -15.33923 -14.60676 -14.29079 -14.21543 -13.93170 -13.78585 -13.25913 -13.03466 -12.43835 -12.18340 -12.02105 -11.87814 -11.55126 -11.07721 -10.87920 -10.78279 -10.74013 -10.41881 -10.39175 -10.26159 -9.99272 -9.76995 -9.71392 -9.52511 -9.17394 -8.40273 -7.24009 -5.99247 -4.00260 1.56172 2.15225 2.94151 3.01101 3.36523 3.40227 3.43507 3.86792 4.45102 4.65699 4.75128 4.88279 5.06761 5.35644 5.38885 5.45768 5.52879 5.67752 5.74191 5.78608 6.04594 6.13361 6.20560 6.27051 6.33258 6.42517 6.54993 6.58402 6.85775 6.88630 7.00944 7.29052 7.33820 7.37168 7.84229 8.02069 8.12492 8.23699 8.55537 9.06754 9.63436 11.11529 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025557 B = 0.004865 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.343994 B = 5753.929979 C = 6253.551841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 C -0.183 4.183 4 N -0.525 5.525 5 C 0.195 3.805 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.034 3.966 15 C 0.113 3.887 16 N -0.573 5.573 17 C 0.516 3.484 18 O -0.461 6.461 19 C 0.062 3.938 20 N -0.733 5.733 21 C 0.699 3.301 22 O -0.540 6.540 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.065 0.935 30 H -0.010 1.010 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 13.370 10.874 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.242 4.242 4 N -0.249 5.249 5 C 0.070 3.930 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.096 4.096 15 C -0.007 4.007 16 N -0.320 5.320 17 C 0.302 3.698 18 O -0.330 6.330 19 C -0.066 4.066 20 N -0.399 5.399 21 C 0.400 3.600 22 O -0.414 6.414 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.008 0.992 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -9.323 12.540 10.544 18.850 hybrid contribution 0.729 0.185 -0.577 0.948 sum -8.594 12.725 9.967 18.307 Atomic orbital electron populations 1.22070 0.95996 1.01976 1.00156 1.21679 0.94573 0.92010 0.95189 1.22517 1.01231 0.98544 1.01877 1.62245 1.33477 1.25780 1.03410 1.19753 0.83686 0.92640 0.96876 1.21109 0.95642 1.08420 1.29069 0.91852 1.24979 0.95049 0.98095 0.96481 1.69951 1.00711 1.38002 1.45303 0.86555 0.77331 0.82606 0.80874 1.20307 1.21435 1.20159 1.22444 0.94565 0.96632 0.95946 1.22302 1.00184 0.94939 0.83261 1.46521 1.67187 1.08102 1.10184 1.20895 0.75228 0.90073 0.83581 1.90862 1.45349 1.17344 1.79467 1.22473 1.06304 0.84026 0.93769 1.45428 1.79204 1.09705 1.05532 1.15933 0.77572 0.81878 0.84631 1.91019 1.54985 1.61759 1.33601 0.93198 0.93407 0.91888 0.89225 0.93047 0.93076 0.91593 0.99213 0.95067 0.92917 0.93738 0.91417 0.87983 0.87839 0.86035 0.86140 0.71719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.04 37.16 0.34 -1.99 16 2 C 0.07 1.43 2.60 -67.71 -0.18 1.26 16 3 C -0.18 -3.22 7.91 37.16 0.29 -2.93 16 4 N -0.52 -11.27 4.32 -228.08 -0.98 -12.25 16 5 C 0.20 5.12 4.66 -4.97 -0.02 5.10 16 6 C -0.50 -14.19 8.35 -34.44 -0.29 -14.48 16 7 H 0.06 1.76 7.69 -52.49 -0.40 1.36 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.03 0.63 4.78 -3.83 -0.02 0.61 16 15 C 0.11 1.77 4.56 -4.04 -0.02 1.75 16 16 N -0.57 -7.69 2.60 -120.73 -0.31 -8.00 16 17 C 0.52 6.19 8.32 -10.55 -0.09 6.10 16 18 O -0.46 -7.16 17.76 5.60 0.10 -7.06 16 19 C 0.06 0.40 7.97 -4.31 -0.03 0.36 16 20 N -0.73 -5.66 6.58 -65.73 -0.43 -6.09 16 21 C 0.70 8.89 8.62 -88.02 -0.76 8.13 16 22 O -0.54 -8.73 17.39 5.33 0.09 -8.64 16 23 H 0.05 0.74 4.77 -51.93 -0.25 0.49 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.94 6.97 -51.93 -0.36 1.58 16 27 H 0.05 0.97 7.88 -51.93 -0.41 0.56 16 28 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.07 1.15 4.84 -51.93 -0.25 0.90 16 30 H -0.01 -0.28 7.88 -51.93 -0.41 -0.69 16 31 H 0.03 0.89 7.75 -51.93 -0.40 0.48 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 33 H 0.04 0.85 5.50 -51.93 -0.29 0.56 16 34 H 0.07 1.34 7.75 -51.93 -0.40 0.94 16 35 H 0.10 1.64 8.00 -51.93 -0.42 1.22 16 36 H 0.10 1.60 4.01 -51.93 -0.21 1.39 16 37 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.44 2.17 8.96 -40.82 -0.37 1.80 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -33.89 316.10 -7.34 -41.24 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.41 Total: 0.06 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.87 Total: 5.39 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -1.00 Total: -52.60 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.19 Total: -15.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.89 -7.34 -41.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686615164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.083 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds