Wall clock time and date at job start Mon Mar 30 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 N 1.46903 * 109.46752 * 119.99128 * 2 1 3 5 5 C 1.46903 * 110.99702 * 147.74694 * 4 2 1 6 6 C 1.50704 * 109.47207 * 288.61482 * 5 4 2 7 7 H 1.08001 * 119.99940 * 4.96681 * 6 5 4 8 8 C 1.37875 * 120.00035 * 184.96863 * 6 5 4 9 9 N 1.31515 * 119.99623 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00004 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47261 * 60.00019 * 10 8 6 12 12 H 1.48503 * 109.47020 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47288 * 299.99662 * 10 8 6 14 14 C 1.46899 * 111.00255 * 271.70480 * 4 2 1 15 15 C 1.52998 * 109.47283 * 71.44558 * 14 4 2 16 16 N 1.46501 * 109.46846 * 174.11628 * 15 14 4 17 17 C 1.34764 * 124.17799 * 270.01532 * 16 15 14 18 18 O 1.21233 * 127.16289 * 359.93197 * 17 16 15 19 19 C 1.51591 * 105.68261 * 179.74859 * 17 16 15 20 20 N 1.47315 * 103.59249 * 0.33347 * 19 17 16 21 21 C 1.33794 * 124.17620 * 89.98296 * 16 15 14 22 22 O 1.21540 * 123.76797 * 0.02562 * 21 16 15 23 23 H 1.08997 * 109.47203 * 306.20768 * 1 2 3 24 24 H 1.09006 * 109.46551 * 66.20600 * 1 2 3 25 25 H 1.08994 * 109.47166 * 186.19833 * 1 2 3 26 26 H 1.08998 * 109.47449 * 239.99643 * 2 1 3 27 27 H 1.09000 * 109.47278 * 183.35536 * 3 2 1 28 28 H 1.09011 * 109.46813 * 303.35440 * 3 2 1 29 29 H 1.08993 * 109.47298 * 63.34959 * 3 2 1 30 30 H 1.08992 * 109.46841 * 48.61529 * 5 4 2 31 31 H 1.08998 * 109.46776 * 168.61466 * 5 4 2 32 32 H 0.97001 * 119.99971 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46667 * 311.44552 * 14 4 2 34 34 H 1.09003 * 109.46907 * 191.45017 * 14 4 2 35 35 H 1.09004 * 109.46749 * 54.11975 * 15 14 4 36 36 H 1.08991 * 109.47381 * 294.11751 * 15 14 4 37 37 H 1.08998 * 110.69147 * 241.76148 * 19 17 16 38 38 H 1.08995 * 110.50521 * 118.81918 * 19 17 16 39 39 H 0.96998 * 126.68934 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6923 1.1996 5 6 3.2886 -1.3811 0.9288 6 6 3.0336 -2.5753 0.0456 7 1 2.0437 -2.7547 -0.3474 8 6 4.0638 -3.4388 -0.2608 9 7 5.2693 -3.2200 0.2174 10 14 3.7475 -4.9193 -1.3549 11 1 3.2583 -4.4603 -2.6797 12 1 5.0088 -5.6831 -1.5311 13 1 2.7242 -5.7913 -0.7242 14 6 2.1567 0.2400 2.3265 15 6 0.7681 0.6443 2.8257 16 7 0.9024 1.4607 4.0347 17 6 0.9292 0.9615 5.2862 18 8 0.8487 -0.2035 5.6118 19 6 1.0858 2.1594 6.2019 20 7 1.1252 3.3023 5.2732 21 6 1.0142 2.7940 4.0326 22 8 1.0156 3.4702 3.0228 23 1 -0.3633 0.6070 0.8292 24 1 -0.3633 0.4146 -0.9404 25 1 -0.3633 -1.0216 0.1110 26 1 1.8935 -0.5139 -0.8899 27 1 3.1284 1.4432 -0.0601 28 1 1.6284 1.9734 -0.8585 29 1 1.7266 1.9387 0.9184 30 1 3.9731 -0.6974 0.4267 31 1 3.7301 -1.7121 1.8688 32 1 5.9942 -3.8272 0.0016 33 1 2.6980 1.1278 1.9997 34 1 2.7063 -0.2441 3.1338 35 1 0.1893 -0.2507 3.0541 36 1 0.2577 1.2198 2.0535 37 1 2.0151 2.0928 6.7677 38 1 0.2315 2.2405 6.8739 39 1 1.2179 4.2384 5.5098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686615164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:32 Heat of formation + Delta-G solvation = -51.947376 kcal Electronic energy + Delta-G solvation = -21525.239649 eV Core-core repulsion = 18275.431540 eV Total energy + Delta-G solvation = -3249.808109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.31477 -39.76819 -39.63104 -37.15874 -35.87363 -34.90113 -32.63477 -31.06236 -28.71291 -28.22209 -27.79189 -24.58788 -23.93924 -23.76665 -21.34520 -20.58758 -19.02388 -18.41902 -18.03740 -17.89884 -17.05931 -16.78825 -16.41077 -16.23985 -15.71331 -15.27357 -15.15973 -14.94354 -14.72273 -14.33444 -14.08347 -13.78961 -13.68009 -13.34165 -13.18074 -12.79130 -12.66513 -12.39532 -12.16244 -12.08825 -11.95408 -11.67110 -11.50806 -11.42296 -11.12401 -10.83966 -10.61156 -10.38919 -9.04333 -8.19997 -6.30081 0.63934 1.18796 1.41052 1.44772 1.52473 1.94796 2.30745 2.40856 3.05185 3.11465 3.27027 3.69390 3.97517 4.06307 4.16575 4.28372 4.33595 4.34786 4.39203 4.55865 4.57709 4.74058 4.76944 4.84113 4.93138 5.00084 5.02769 5.14330 5.20227 5.41233 5.53728 5.66892 5.86137 6.04531 6.08860 6.35872 6.41182 6.58096 6.84818 7.12870 7.39059 8.90953 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025557 B = 0.004865 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.343994 B = 5753.929979 C = 6253.551841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.071 3.929 3 C -0.172 4.172 4 N -0.529 5.529 5 C 0.212 3.788 6 C -0.519 4.519 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.937 5.937 10 Si 0.971 3.029 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.042 3.958 15 C 0.127 3.873 16 N -0.582 5.582 17 C 0.506 3.494 18 O -0.505 6.505 19 C 0.079 3.921 20 N -0.707 5.707 21 C 0.693 3.307 22 O -0.580 6.580 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.069 0.931 30 H -0.038 1.038 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 14.354 11.675 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.037 4.037 3 C -0.230 4.230 4 N -0.254 5.254 5 C 0.086 3.914 6 C -0.557 4.557 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.795 3.205 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.193 1.193 14 C -0.088 4.088 15 C 0.006 3.994 16 N -0.328 5.328 17 C 0.296 3.704 18 O -0.376 6.376 19 C -0.047 4.047 20 N -0.373 5.373 21 C 0.394 3.606 22 O -0.457 6.457 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.088 0.912 30 H -0.021 1.021 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.173 0.827 38 H 0.182 0.818 39 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -10.966 13.581 11.402 20.850 hybrid contribution 1.257 -0.064 -0.758 1.469 sum -9.709 13.518 10.645 19.756 Atomic orbital electron populations 1.21978 0.92988 1.02076 1.02184 1.21746 0.96825 0.92273 0.92903 1.22394 0.99793 0.97644 1.03168 1.62203 1.30575 1.27365 1.05243 1.19367 0.85200 0.92311 0.94549 1.21408 0.95805 1.09109 1.29406 0.91711 1.25928 0.94647 1.01278 0.97866 1.70089 1.01713 1.39305 1.46631 0.85413 0.77432 0.78557 0.79079 1.19099 1.20894 1.19339 1.22381 0.96648 0.95439 0.94319 1.21899 0.97526 0.95286 0.84736 1.46567 1.67483 1.08608 1.10161 1.21868 0.73732 0.91041 0.83762 1.90843 1.47271 1.19567 1.79950 1.22718 1.09734 0.80028 0.92253 1.45343 1.77137 1.10924 1.03853 1.16074 0.77624 0.81297 0.85622 1.90991 1.57033 1.62320 1.35318 0.91678 0.90931 0.92695 0.92019 0.95240 0.90635 0.91176 1.02058 0.98343 0.92726 0.94151 0.93439 0.88549 0.87284 0.82717 0.81809 0.69703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.04 71.98 0.65 -3.54 16 2 C 0.07 2.77 2.60 44.92 0.12 2.89 16 3 C -0.17 -6.06 7.91 71.98 0.57 -5.49 16 4 N -0.53 -23.68 4.32 -875.50 -3.78 -27.46 16 5 C 0.21 11.76 4.66 85.56 0.40 12.16 16 6 C -0.52 -30.17 8.35 25.60 0.21 -29.95 16 7 H 0.06 3.67 7.69 -2.91 -0.02 3.64 16 8 C 0.00 0.03 5.46 84.65 0.46 0.49 16 9 N -0.94 -57.83 13.29 21.45 0.28 -57.55 16 10 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.04 1.61 4.78 86.30 0.41 2.03 16 15 C 0.13 3.98 4.56 86.38 0.39 4.37 16 16 N -0.58 -15.12 2.60 -773.13 -2.01 -17.13 16 17 C 0.51 11.42 8.32 87.94 0.73 12.15 16 18 O -0.50 -15.54 17.76 -2.88 -0.05 -15.59 16 19 C 0.08 0.69 7.97 85.76 0.68 1.38 16 20 N -0.71 -8.52 6.58 -480.30 -3.16 -11.68 16 21 C 0.69 16.48 8.62 179.44 1.55 18.03 16 22 O -0.58 -18.15 17.39 -3.84 -0.07 -18.22 16 23 H 0.06 1.82 4.77 -2.39 -0.01 1.81 16 24 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 2.75 6.97 -2.39 -0.02 2.73 16 27 H 0.03 1.14 7.88 -2.39 -0.02 1.12 16 28 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.07 2.42 4.84 -2.39 -0.01 2.41 16 30 H -0.04 -2.29 7.88 -2.39 -0.02 -2.31 16 31 H 0.00 -0.10 7.75 -2.39 -0.02 -0.11 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.04 1.60 5.50 -2.39 -0.01 1.59 16 34 H 0.05 2.00 7.75 -2.39 -0.02 1.98 16 35 H 0.10 3.13 8.00 -2.39 -0.02 3.11 16 36 H 0.11 3.28 4.01 -2.39 -0.01 3.27 16 37 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.46 2.76 8.96 -92.71 -0.83 1.93 16 Total: -1.00 -77.77 316.10 -0.34 -78.11 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.24 Total: 7.73 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 6.18 Total: 14.52 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -8.67 Total: -113.82 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.12 Total: -33.81 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.77 -0.34 -78.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686615164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.164 kcal (2) G-P(sol) polarization free energy of solvation -77.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds