Wall clock time and date at job start Mon Mar 30 2020 04:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46907 * 2 1 4 4 C 1.50701 * 109.47065 * 119.99766 * 2 1 3 5 5 H 1.08000 * 119.99804 * 119.99980 * 4 2 1 6 6 C 1.37872 * 120.00147 * 300.00447 * 4 2 1 7 7 N 1.31519 * 120.00113 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00159 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46754 * 90.00472 * 8 6 4 10 10 H 1.48499 * 109.47306 * 210.00231 * 8 6 4 11 11 H 1.48498 * 109.47192 * 330.00694 * 8 6 4 12 12 N 1.46493 * 109.46998 * 239.99750 * 2 1 3 13 13 C 1.34775 * 119.99977 * 85.00228 * 12 2 1 14 14 O 1.21284 * 120.00222 * 359.97438 * 13 12 2 15 15 C 1.50706 * 120.00404 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.46867 * 59.99448 * 15 13 12 17 17 C 1.53004 * 109.46481 * 299.99896 * 15 13 12 18 18 C 1.52999 * 109.46576 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47609 * 59.99697 * 18 17 15 20 20 C 1.52997 * 109.47080 * 300.00325 * 19 18 17 21 21 H 1.08997 * 109.47193 * 299.99469 * 20 19 18 22 22 C 1.50706 * 109.46819 * 179.97438 * 20 19 18 23 23 O 1.20825 * 119.99859 * 239.99256 * 22 20 19 24 24 O 1.34224 * 120.00295 * 60.00215 * 22 20 19 25 25 C 1.52996 * 109.47342 * 59.99733 * 20 19 18 26 26 H 1.09005 * 109.47229 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47050 * 299.99916 * 1 2 3 28 28 H 1.09003 * 109.47406 * 59.99738 * 1 2 3 29 29 H 0.96997 * 120.00060 * 179.97438 * 7 6 4 30 30 H 0.97003 * 120.00440 * 265.00275 * 12 2 1 31 31 H 1.08994 * 109.47049 * 59.99929 * 17 15 13 32 32 H 1.09001 * 109.47204 * 299.99346 * 17 15 13 33 33 H 1.09005 * 109.47226 * 299.99416 * 18 17 15 34 34 H 1.09000 * 109.47282 * 180.02562 * 18 17 15 35 35 H 1.08995 * 109.47152 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.46674 * 60.00112 * 19 18 17 37 37 H 0.96700 * 117.00196 * 179.97438 * 24 22 20 38 38 H 1.08997 * 109.47192 * 59.99735 * 25 20 19 39 39 H 1.09003 * 109.46861 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9770 1.9954 3.9071 11 1 0.8489 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6488 -0.7289 -3.5878 16 1 1.9759 -1.5507 -3.8325 17 6 4.0513 -1.2799 -3.3222 18 6 4.5610 -2.0007 -4.5718 19 6 4.6126 -1.0171 -5.7426 20 6 3.2102 -0.4661 -6.0080 21 1 2.5374 -1.2878 -6.2533 22 6 3.2613 0.5032 -7.1609 23 8 2.9243 1.6522 -6.9995 24 8 3.6809 0.0900 -8.3671 25 6 2.7005 0.2548 -4.7585 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.9040 -0.5274 4.4376 30 1 2.2490 -1.6318 -1.1526 31 1 4.0145 -1.9802 -2.4878 32 1 4.7242 -0.4581 -3.0774 33 1 3.8882 -2.8225 -4.8171 34 1 5.5599 -2.3936 -4.3826 35 1 4.9762 -1.5306 -6.6327 36 1 5.2854 -0.1954 -5.4973 37 1 3.6960 0.7478 -9.0757 38 1 3.3734 1.0765 -4.5132 39 1 1.7012 0.6469 -4.9475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687777019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:49 Heat of formation + Delta-G solvation = -153.542791 kcal Electronic energy + Delta-G solvation = -21040.817541 eV Core-core repulsion = 17754.311173 eV Total energy + Delta-G solvation = -3286.506368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80173 -39.49694 -37.45420 -36.27805 -34.97894 -32.52602 -31.66220 -31.00316 -29.50211 -25.20204 -24.66482 -23.84530 -21.54591 -21.01669 -19.90506 -19.46448 -18.20263 -17.54027 -16.57088 -16.05836 -15.70702 -15.48034 -15.10211 -14.64822 -14.19605 -13.96007 -13.61715 -13.35708 -12.94732 -12.85093 -12.60547 -12.40940 -12.18658 -11.81616 -11.71599 -11.54107 -11.30821 -11.19508 -10.89405 -10.83173 -10.79331 -10.55288 -10.28259 -10.17128 -9.68130 -9.21997 -9.01935 -8.74706 -8.12381 -6.20606 -4.22944 2.03249 2.80446 3.23364 3.26293 3.36433 3.41673 3.93041 4.32583 4.47856 4.53749 4.60844 4.90849 5.02176 5.14617 5.14716 5.17871 5.28446 5.30847 5.46472 5.58325 5.81235 5.84226 5.86931 6.04384 6.08473 6.22507 6.27537 6.32652 6.40099 6.40135 6.57894 6.87856 7.20958 7.31852 7.53985 7.70680 8.16715 8.54964 8.76577 8.97424 9.40842 10.91557 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.004168 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.458766 B = 6716.929719 C = 7249.522571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.701 5.701 13 C 0.506 3.494 14 O -0.553 6.553 15 C -0.106 4.106 16 H 0.095 0.905 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.078 4.078 21 H 0.110 0.890 22 C 0.480 3.520 23 O -0.508 6.508 24 O -0.519 6.519 25 C -0.084 4.084 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.407 0.593 38 H 0.080 0.920 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -3.945 -20.500 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.291 3.709 14 O -0.432 6.432 15 C -0.127 4.127 16 H 0.113 0.887 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.097 4.097 21 H 0.127 0.873 22 C 0.322 3.678 23 O -0.395 6.395 24 O -0.331 6.331 25 C -0.121 4.121 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.266 0.734 38 H 0.099 0.901 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.580 -3.072 -19.929 20.480 hybrid contribution -0.582 0.730 -0.169 0.949 sum 2.998 -2.342 -20.099 20.455 Atomic orbital electron populations 1.22450 0.99388 1.00782 0.99287 1.19092 0.90092 0.94706 0.82929 0.93431 1.21042 1.33202 1.14381 0.88560 0.90217 1.24830 0.95494 0.96684 0.95539 1.69869 1.44963 1.40150 0.98036 0.86877 0.80519 0.83656 0.77437 1.20327 1.22173 1.18664 1.46184 1.65117 1.13772 1.09787 1.20387 0.78354 0.87423 0.84720 1.90670 1.51227 1.16147 1.85174 1.21314 0.98459 0.98925 0.94028 0.88693 1.21596 0.94854 1.00732 0.98182 1.21527 1.01969 0.97670 0.94041 1.21561 0.94028 0.99753 0.99567 1.21120 1.00682 0.97018 0.90888 0.87258 1.23606 0.72558 0.88331 0.83297 1.90760 1.44348 1.20510 1.83899 1.84538 1.79626 1.47819 1.21101 1.21221 1.03433 0.97263 0.90230 0.92859 0.93514 0.94569 0.92308 0.77212 0.90548 0.91029 0.91314 0.90906 0.90567 0.91209 0.73422 0.90107 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 8.96 37.16 0.33 -3.29 16 2 C 0.24 5.62 2.15 -69.08 -0.15 5.48 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.92 16 4 C -0.53 -14.37 9.31 -34.44 -0.32 -14.69 16 5 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 8 Si 0.89 21.94 24.37 -169.99 -4.14 17.80 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 11 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 12 N -0.70 -13.63 4.96 -54.93 -0.27 -13.90 16 13 C 0.51 9.36 7.12 -10.98 -0.08 9.28 16 14 O -0.55 -12.59 15.64 5.55 0.09 -12.50 16 15 C -0.11 -1.36 2.53 -91.77 -0.23 -1.59 16 16 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 17 C -0.12 -1.26 5.10 -26.73 -0.14 -1.40 16 18 C -0.11 -0.92 5.92 -26.73 -0.16 -1.07 16 19 C -0.11 -0.92 5.14 -26.73 -0.14 -1.05 16 20 C -0.08 -0.75 2.63 -91.77 -0.24 -1.00 16 21 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 22 C 0.48 5.21 7.63 36.01 0.27 5.48 16 23 O -0.51 -7.50 16.74 -18.75 -0.31 -7.82 16 24 O -0.52 -4.02 13.33 -39.24 -0.52 -4.54 16 25 C -0.08 -1.09 3.06 -26.73 -0.08 -1.18 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.09 3.27 -51.92 -0.17 0.92 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.39 6.65 7.96 -40.82 -0.32 6.32 16 31 H 0.08 0.82 7.56 -51.93 -0.39 0.43 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.41 1.56 9.10 45.56 0.41 1.97 16 38 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 39 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -34.31 314.68 -5.73 -40.04 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.06 Total: 4.77 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.02 Total: -2.95 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.50 Total: -39.54 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.75 Total: -24.87 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.31 -5.73 -40.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687777019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.501 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds