Wall clock time and date at job start Mon Mar 30 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46907 * 2 1 4 4 C 1.50701 * 109.47065 * 119.99766 * 2 1 3 5 5 H 1.08000 * 119.99804 * 119.99980 * 4 2 1 6 6 C 1.37872 * 120.00147 * 300.00447 * 4 2 1 7 7 N 1.31519 * 120.00113 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00159 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46754 * 90.00472 * 8 6 4 10 10 H 1.48499 * 109.47306 * 210.00231 * 8 6 4 11 11 H 1.48498 * 109.47192 * 330.00694 * 8 6 4 12 12 N 1.46493 * 109.46998 * 239.99750 * 2 1 3 13 13 C 1.34775 * 119.99977 * 85.00228 * 12 2 1 14 14 O 1.21284 * 120.00222 * 359.97438 * 13 12 2 15 15 C 1.50706 * 120.00404 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.46867 * 59.99448 * 15 13 12 17 17 C 1.53004 * 109.46481 * 299.99896 * 15 13 12 18 18 C 1.52999 * 109.46576 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47609 * 59.99697 * 18 17 15 20 20 C 1.52997 * 109.47080 * 300.00325 * 19 18 17 21 21 H 1.08997 * 109.47193 * 299.99469 * 20 19 18 22 22 C 1.50706 * 109.46819 * 179.97438 * 20 19 18 23 23 O 1.20825 * 119.99859 * 239.99256 * 22 20 19 24 24 O 1.34224 * 120.00295 * 60.00215 * 22 20 19 25 25 C 1.52996 * 109.47342 * 59.99733 * 20 19 18 26 26 H 1.09005 * 109.47229 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47050 * 299.99916 * 1 2 3 28 28 H 1.09003 * 109.47406 * 59.99738 * 1 2 3 29 29 H 0.96997 * 120.00060 * 179.97438 * 7 6 4 30 30 H 0.97003 * 120.00440 * 265.00275 * 12 2 1 31 31 H 1.08994 * 109.47049 * 59.99929 * 17 15 13 32 32 H 1.09001 * 109.47204 * 299.99346 * 17 15 13 33 33 H 1.09005 * 109.47226 * 299.99416 * 18 17 15 34 34 H 1.09000 * 109.47282 * 180.02562 * 18 17 15 35 35 H 1.08995 * 109.47152 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.46674 * 60.00112 * 19 18 17 37 37 H 0.96700 * 117.00196 * 179.97438 * 24 22 20 38 38 H 1.08997 * 109.47192 * 59.99735 * 25 20 19 39 39 H 1.09003 * 109.46861 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5566 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8743 2.6994 10 1 0.9770 1.9954 3.9071 11 1 0.8489 2.1773 1.4923 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6488 -0.7289 -3.5878 16 1 1.9759 -1.5507 -3.8325 17 6 4.0513 -1.2799 -3.3222 18 6 4.5610 -2.0007 -4.5718 19 6 4.6126 -1.0171 -5.7426 20 6 3.2102 -0.4661 -6.0080 21 1 2.5374 -1.2878 -6.2533 22 6 3.2613 0.5032 -7.1609 23 8 2.9243 1.6522 -6.9995 24 8 3.6809 0.0900 -8.3671 25 6 2.7005 0.2548 -4.7585 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.9040 -0.5274 4.4376 30 1 2.2490 -1.6318 -1.1526 31 1 4.0145 -1.9802 -2.4878 32 1 4.7242 -0.4581 -3.0774 33 1 3.8882 -2.8225 -4.8171 34 1 5.5599 -2.3936 -4.3826 35 1 4.9762 -1.5306 -6.6327 36 1 5.2854 -0.1954 -5.4973 37 1 3.6960 0.7478 -9.0757 38 1 3.3734 1.0765 -4.5132 39 1 1.7012 0.6469 -4.9475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687777019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:48 Heat of formation + Delta-G solvation = -179.565778 kcal Electronic energy + Delta-G solvation = -21041.945983 eV Core-core repulsion = 17754.311173 eV Total energy + Delta-G solvation = -3287.634809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72293 -40.81038 -38.52687 -37.08281 -36.79572 -34.43364 -32.92113 -31.88844 -31.10522 -27.23226 -25.50543 -25.08383 -22.68268 -22.23175 -21.17814 -20.67374 -19.27675 -18.85246 -18.03848 -17.33734 -17.18924 -16.76510 -16.17121 -16.03375 -15.52132 -15.01117 -14.87082 -14.74849 -14.49661 -14.17568 -14.06258 -13.65874 -13.45207 -13.22600 -13.16434 -12.78326 -12.58796 -12.37118 -12.19969 -12.14710 -11.82519 -11.66701 -11.57710 -11.41651 -11.28725 -11.12215 -10.87584 -10.54634 -9.85445 -8.38602 -6.43722 1.21035 1.25722 1.34550 1.43828 1.77946 2.05720 2.25424 2.53131 2.97799 3.55345 3.69602 3.79134 3.96660 4.12786 4.27239 4.38782 4.42338 4.43468 4.45842 4.56749 4.65263 4.68210 4.72699 4.99441 5.04635 5.07798 5.15972 5.20669 5.30175 5.32035 5.32828 5.43450 5.49954 5.63735 5.67263 6.14424 6.58066 6.90024 7.01010 7.19910 7.49024 8.76472 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.004168 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.458766 B = 6716.929719 C = 7249.522571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.239 3.761 3 H 0.017 0.983 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.936 3.064 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.268 1.268 12 N -0.697 5.697 13 C 0.501 3.499 14 O -0.601 6.601 15 C -0.092 4.092 16 H 0.132 0.868 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.107 4.107 20 C -0.072 4.072 21 H 0.142 0.858 22 C 0.486 3.514 23 O -0.558 6.558 24 O -0.505 6.505 25 C -0.079 4.079 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.270 0.730 30 H 0.409 0.591 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.426 0.574 38 H 0.047 0.953 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 -5.768 -22.593 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.134 3.866 3 H 0.034 0.966 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.764 3.236 9 H -0.185 1.185 10 H -0.219 1.219 11 H -0.193 1.193 12 N -0.346 5.346 13 C 0.289 3.711 14 O -0.482 6.482 15 C -0.113 4.113 16 H 0.150 0.850 17 C -0.153 4.153 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.091 4.091 21 H 0.160 0.840 22 C 0.330 3.670 23 O -0.449 6.449 24 O -0.319 6.319 25 C -0.118 4.118 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.287 0.713 38 H 0.066 0.934 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.469 -4.941 -22.067 22.878 hybrid contribution -0.466 1.289 0.410 1.431 sum 3.004 -3.652 -21.657 22.167 Atomic orbital electron populations 1.22341 0.97918 1.01774 0.99240 1.18746 0.91184 0.93056 0.83605 0.96554 1.21251 1.32254 1.13580 0.89753 0.92097 1.25504 0.96805 0.99106 0.95456 1.69964 1.46660 1.41852 0.98613 0.86055 0.79992 0.80588 0.77002 1.18461 1.21938 1.19300 1.46009 1.65246 1.14381 1.09001 1.21416 0.76941 0.86993 0.85735 1.90649 1.53081 1.18521 1.85995 1.21321 1.00260 0.99068 0.90623 0.85026 1.21630 0.92986 1.00356 1.00344 1.21514 1.03295 0.97646 0.91821 1.21576 0.92551 0.99565 1.00785 1.21112 1.02306 0.96996 0.88694 0.84026 1.23795 0.71349 0.87604 0.84236 1.90757 1.46783 1.22608 1.84758 1.84484 1.78566 1.48195 1.20619 1.21087 1.01541 0.96856 0.92272 0.91298 0.94271 0.93852 0.92055 0.75524 0.90111 0.93168 0.88783 0.89394 0.88089 0.92592 0.71277 0.93399 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.81 8.96 71.98 0.65 -6.17 16 2 C 0.24 11.46 2.15 44.25 0.10 11.56 16 3 H 0.02 0.90 6.63 -2.39 -0.02 0.88 16 4 C -0.53 -28.77 9.31 25.60 0.24 -28.53 16 5 H 0.06 3.46 7.98 -2.91 -0.02 3.44 16 6 C 0.03 1.76 5.45 84.65 0.46 2.22 16 7 N -0.93 -55.64 13.96 21.45 0.30 -55.34 16 8 Si 0.94 45.32 24.37 68.60 1.67 47.00 16 9 H -0.26 -11.75 6.87 99.48 0.68 -11.06 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.27 -13.15 6.53 99.48 0.65 -12.50 16 12 N -0.70 -26.81 4.96 -446.10 -2.21 -29.02 16 13 C 0.50 18.47 7.12 87.66 0.62 19.09 16 14 O -0.60 -28.10 15.64 -3.04 -0.05 -28.15 16 15 C -0.09 -2.21 2.53 -11.54 -0.03 -2.24 16 16 H 0.13 2.27 8.14 -2.39 -0.02 2.26 16 17 C -0.12 -2.28 5.10 30.60 0.16 -2.12 16 18 C -0.11 -1.26 5.92 30.59 0.18 -1.07 16 19 C -0.11 -1.40 5.14 30.59 0.16 -1.25 16 20 C -0.07 -1.21 2.63 -11.54 -0.03 -1.24 16 21 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 22 C 0.49 9.75 7.63 71.24 0.54 10.30 16 23 O -0.56 -16.59 16.74 21.97 0.37 -16.22 16 24 O -0.51 -6.35 13.33 -51.35 -0.68 -7.04 16 25 C -0.08 -2.04 3.06 30.59 0.09 -1.95 16 26 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 27 H 0.04 1.77 3.27 -2.38 -0.01 1.76 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.41 13.28 7.96 -92.71 -0.74 12.54 16 31 H 0.08 1.54 7.56 -2.39 -0.02 1.52 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.91 8.11 -2.39 -0.02 0.89 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.43 2.16 9.10 -74.06 -0.67 1.49 16 38 H 0.05 1.53 8.06 -2.39 -0.02 1.51 16 39 H 0.06 1.69 8.06 -2.39 -0.02 1.67 16 Total: -1.00 -77.01 314.68 2.11 -74.90 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -0.42 Total: 15.27 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 3.14 Total: -1.39 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.91 Total: -84.36 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.36 Total: -51.41 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.67 Total: 47.00 kcal Total: -77.01 2.11 -74.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687777019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.664 kcal (2) G-P(sol) polarization free energy of solvation -77.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds