Wall clock time and date at job start Mon Mar 30 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00290 * 2 1 4 4 H 1.09002 * 110.29018 * 32.60776 * 3 2 1 5 5 C 1.54385 * 110.40802 * 270.42587 * 3 2 1 6 6 N 1.48561 * 104.59671 * 217.20400 * 5 3 2 7 7 C 1.46900 * 111.00226 * 159.03605 * 6 5 3 8 8 C 1.53005 * 109.46673 * 61.24584 * 7 6 5 9 9 C 1.50699 * 115.55016 * 53.58715 * 8 7 6 10 10 H 1.08001 * 120.00039 * 219.98404 * 9 8 7 11 11 C 1.37877 * 120.00265 * 39.98539 * 9 8 7 12 12 N 1.31512 * 119.99456 * 11.08625 * 11 9 8 13 13 Si 1.86794 * 120.00122 * 191.08778 * 11 9 8 14 14 H 1.48506 * 109.47182 * 275.00209 * 13 11 9 15 15 H 1.48498 * 109.47223 * 35.00469 * 13 11 9 16 16 H 1.48500 * 109.47196 * 155.00413 * 13 11 9 17 17 C 1.52993 * 117.51659 * 199.29145 * 8 7 6 18 18 C 1.52995 * 60.00320 * 107.47897 * 17 8 7 19 19 C 1.48561 * 104.21949 * 39.48439 * 6 5 3 20 20 C 1.54254 * 110.32738 * 154.73856 * 3 2 1 21 21 H 1.09002 * 110.41371 * 237.93702 * 20 3 2 22 22 C 1.50702 * 110.32321 * 0.10148 * 20 3 2 23 23 O 1.20826 * 120.00073 * 89.72138 * 22 20 3 24 24 O 1.34230 * 120.00154 * 269.72437 * 22 20 3 25 25 H 1.09004 * 109.47416 * 64.92243 * 1 2 3 26 26 H 1.08998 * 109.47625 * 184.93005 * 1 2 3 27 27 H 1.09007 * 109.46840 * 304.92999 * 1 2 3 28 28 H 1.09002 * 110.41193 * 98.42532 * 5 3 2 29 29 H 1.08997 * 110.41185 * 335.98382 * 5 3 2 30 30 H 1.08999 * 109.47007 * 301.24842 * 7 6 5 31 31 H 1.08995 * 109.46980 * 181.24050 * 7 6 5 32 32 H 0.97003 * 119.99798 * 174.99133 * 12 11 9 33 33 H 1.09004 * 117.49783 * 214.97004 * 17 8 7 34 34 H 1.08997 * 117.50533 * 359.97438 * 17 8 7 35 35 H 1.09003 * 117.50091 * 252.50857 * 18 17 8 36 36 H 1.09009 * 117.49977 * 107.48749 * 18 17 8 37 37 H 1.08999 * 110.41406 * 79.29097 * 19 6 5 38 38 H 1.08997 * 110.41262 * 201.62286 * 19 6 5 39 39 H 0.96700 * 117.00205 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3773 2.0011 0.5509 5 6 2.2194 1.8016 -1.4469 6 7 3.5035 2.5475 -1.4050 7 6 4.0928 2.6570 -2.7461 8 6 3.1379 3.4261 -3.6614 9 6 2.6916 4.7721 -3.1514 10 1 1.6681 5.0889 -3.2876 11 6 3.5898 5.5991 -2.5109 12 7 4.8744 5.3184 -2.5346 13 14 2.9821 7.1182 -1.6096 14 1 2.8485 8.2432 -2.5697 15 1 1.6610 6.8332 -0.9941 16 1 3.9536 7.4859 -0.5484 17 6 3.3272 3.2701 -5.1715 18 6 2.1329 2.6114 -4.4783 19 6 4.3674 1.7368 -0.5086 20 6 3.4233 1.2628 0.6173 21 1 3.4852 1.9365 1.4720 22 6 3.7702 -0.1433 1.0340 23 8 4.3129 -0.8884 0.2528 24 8 3.4764 -0.5680 2.2729 25 1 -0.3634 0.4356 -0.9308 26 1 -0.3634 -1.0238 0.0883 27 1 -0.3633 0.5885 0.8426 28 1 1.4052 2.4628 -1.7435 29 1 2.2928 0.9567 -2.1316 30 1 4.2605 1.6594 -3.1519 31 1 5.0425 3.1882 -2.6834 32 1 5.5132 5.9370 -2.1471 33 1 3.1289 4.1411 -5.7963 34 1 4.1324 2.6199 -5.5134 35 1 2.1523 1.5276 -4.3640 36 1 1.1489 3.0490 -4.6468 37 1 4.7768 0.8817 -1.0464 38 1 5.1716 2.3487 -0.1002 39 1 3.7185 -1.4776 2.4942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690090702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:45 Heat of formation + Delta-G solvation = -93.297600 kcal Electronic energy + Delta-G solvation = -22035.775088 eV Core-core repulsion = 18751.881148 eV Total energy + Delta-G solvation = -3283.893940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44988 -38.63167 -37.12194 -36.03132 -35.36969 -31.99586 -31.07499 -28.36691 -26.58178 -25.70933 -24.87896 -22.89436 -21.19007 -20.77709 -19.88200 -18.90043 -18.01851 -17.05463 -16.41467 -15.86397 -15.39077 -15.14161 -14.77092 -14.51659 -14.08733 -13.83867 -13.43620 -13.26955 -12.83195 -12.66245 -12.07721 -11.72022 -11.48758 -11.31083 -11.26344 -11.15040 -10.98654 -10.88334 -10.74171 -10.48030 -10.40129 -10.22024 -10.00316 -9.48616 -9.25599 -8.98355 -8.59123 -7.96160 -7.49716 -5.91445 -3.92025 2.42536 3.14177 3.34909 3.42134 3.45873 3.76503 4.48058 4.71496 4.82164 4.93038 5.21146 5.23348 5.34928 5.45607 5.52889 5.58467 5.64005 5.66981 5.76737 6.05967 6.17529 6.21229 6.27858 6.41152 6.51562 6.57342 6.65719 6.69358 6.74583 6.96911 7.06701 7.22405 7.36167 7.53764 7.80563 8.00650 8.07880 8.10059 8.54098 9.00814 9.68026 11.13612 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.006591 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.372188 B = 4247.373933 C = 4526.446686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.096 3.904 4 H 0.084 0.916 5 C 0.021 3.979 6 N -0.462 5.462 7 C 0.093 3.907 8 C 0.065 3.935 9 C -0.479 4.479 10 H 0.054 0.946 11 C 0.089 3.911 12 N -0.876 5.876 13 Si 0.890 3.110 14 H -0.286 1.286 15 H -0.275 1.275 16 H -0.287 1.287 17 C -0.202 4.202 18 C -0.217 4.217 19 C 0.040 3.960 20 C -0.084 4.084 21 H 0.116 0.884 22 C 0.504 3.496 23 O -0.512 6.512 24 O -0.517 6.517 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.046 0.954 30 H -0.005 1.005 31 H 0.116 0.884 32 H 0.258 0.742 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 -8.773 7.947 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.307 6.307 3 C 0.037 3.963 4 H 0.102 0.898 5 C -0.108 4.108 6 N -0.185 5.185 7 C -0.034 4.034 8 C 0.064 3.936 9 C -0.516 4.516 10 H 0.072 0.928 11 C -0.115 4.115 12 N -0.513 5.513 13 Si 0.718 3.282 14 H -0.212 1.212 15 H -0.200 1.200 16 H -0.213 1.213 17 C -0.240 4.240 18 C -0.255 4.255 19 C -0.089 4.089 20 C -0.104 4.104 21 H 0.134 0.866 22 C 0.346 3.654 23 O -0.400 6.400 24 O -0.328 6.328 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.013 0.987 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -4.191 -8.145 7.947 12.127 hybrid contribution -0.265 -0.436 0.172 0.539 sum -4.456 -8.582 8.119 12.626 Atomic orbital electron populations 1.22755 0.80734 1.02310 1.00437 1.87883 1.20126 1.27576 1.95076 1.22954 0.91647 0.84395 0.97264 0.89836 1.23569 0.96491 0.97016 0.93709 1.65455 1.00778 1.40609 1.11708 1.21900 1.00972 0.94764 0.85799 1.18887 0.93253 0.94357 0.87059 1.20237 0.95905 0.99103 1.36344 0.92777 1.24747 0.94633 0.97259 0.94839 1.69805 1.00811 1.35774 1.44902 0.86665 0.78760 0.82929 0.79804 1.21215 1.19999 1.21298 1.22937 0.98550 1.01514 1.01048 1.22957 0.94594 0.96767 1.11156 1.23140 0.95616 0.97110 0.92997 1.21958 0.97023 0.90530 1.00868 0.86625 1.22952 0.73665 0.90155 0.78633 1.90670 1.40001 1.56696 1.52596 1.84535 1.77786 1.36682 1.33798 0.93565 0.90040 0.93875 0.88854 0.93625 0.98714 0.86658 0.93147 0.90385 0.91987 0.91893 0.90846 0.92451 0.89419 0.73859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.92 101.05 1.10 1.50 16 2 O -0.39 -6.02 8.90 -35.23 -0.31 -6.33 16 3 C 0.10 1.53 3.48 -25.35 -0.09 1.44 16 4 H 0.08 1.20 7.80 -51.93 -0.40 0.80 16 5 C 0.02 0.39 4.83 -2.18 -0.01 0.38 16 6 N -0.46 -9.70 5.10 -229.96 -1.17 -10.87 16 7 C 0.09 2.15 4.13 -3.82 -0.02 2.14 16 8 C 0.07 1.57 1.30 -155.66 -0.20 1.37 16 9 C -0.48 -12.61 8.67 -34.44 -0.30 -12.91 16 10 H 0.05 1.44 7.84 -52.49 -0.41 1.03 16 11 C 0.09 2.34 5.24 -17.82 -0.09 2.24 16 12 N -0.88 -23.62 11.04 55.43 0.61 -23.01 16 13 Si 0.89 20.80 29.56 -169.99 -5.02 15.77 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.20 -4.62 9.95 -26.74 -0.27 -4.88 16 18 C -0.22 -4.70 8.94 -26.73 -0.24 -4.94 16 19 C 0.04 0.73 5.98 -2.18 -0.01 0.72 16 20 C -0.08 -1.32 3.56 -90.39 -0.32 -1.64 16 21 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 22 C 0.50 7.86 6.20 36.01 0.22 8.08 16 23 O -0.51 -9.51 16.40 -18.75 -0.31 -9.82 16 24 O -0.52 -6.29 13.42 -39.26 -0.53 -6.82 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.44 7.99 -51.92 -0.42 0.02 16 28 H 0.09 1.84 7.86 -51.93 -0.41 1.43 16 29 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 30 H -0.01 -0.12 7.92 -51.93 -0.41 -0.53 16 31 H 0.12 2.95 6.16 -51.93 -0.32 2.63 16 32 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 33 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.29 7.80 -51.93 -0.41 0.88 16 36 H 0.07 1.55 8.14 -51.92 -0.42 1.13 16 37 H 0.06 1.13 6.63 -51.93 -0.34 0.78 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.40 3.12 9.10 45.56 0.41 3.54 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -30.28 320.87 -7.31 -37.59 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.19 Total: 5.15 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.22 Total: -6.51 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: -0.56 Total: -33.88 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.15 Total: -22.96 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.28 -7.31 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690090702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.707 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds