Wall clock time and date at job start Mon Mar 30 2020 05:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00290 * 2 1 4 4 H 1.09002 * 110.29018 * 32.60776 * 3 2 1 5 5 C 1.54385 * 110.40802 * 270.42587 * 3 2 1 6 6 N 1.48561 * 104.59671 * 217.20400 * 5 3 2 7 7 C 1.46900 * 111.00226 * 159.03605 * 6 5 3 8 8 C 1.53005 * 109.46673 * 61.24584 * 7 6 5 9 9 C 1.50699 * 115.55016 * 53.58715 * 8 7 6 10 10 H 1.08001 * 120.00039 * 219.98404 * 9 8 7 11 11 C 1.37877 * 120.00265 * 39.98539 * 9 8 7 12 12 N 1.31512 * 119.99456 * 11.08625 * 11 9 8 13 13 Si 1.86794 * 120.00122 * 191.08778 * 11 9 8 14 14 H 1.48506 * 109.47182 * 275.00209 * 13 11 9 15 15 H 1.48498 * 109.47223 * 35.00469 * 13 11 9 16 16 H 1.48500 * 109.47196 * 155.00413 * 13 11 9 17 17 C 1.52993 * 117.51659 * 199.29145 * 8 7 6 18 18 C 1.52995 * 60.00320 * 107.47897 * 17 8 7 19 19 C 1.48561 * 104.21949 * 39.48439 * 6 5 3 20 20 C 1.54254 * 110.32738 * 154.73856 * 3 2 1 21 21 H 1.09002 * 110.41371 * 237.93702 * 20 3 2 22 22 C 1.50702 * 110.32321 * 0.10148 * 20 3 2 23 23 O 1.20826 * 120.00073 * 89.72138 * 22 20 3 24 24 O 1.34230 * 120.00154 * 269.72437 * 22 20 3 25 25 H 1.09004 * 109.47416 * 64.92243 * 1 2 3 26 26 H 1.08998 * 109.47625 * 184.93005 * 1 2 3 27 27 H 1.09007 * 109.46840 * 304.92999 * 1 2 3 28 28 H 1.09002 * 110.41193 * 98.42532 * 5 3 2 29 29 H 1.08997 * 110.41185 * 335.98382 * 5 3 2 30 30 H 1.08999 * 109.47007 * 301.24842 * 7 6 5 31 31 H 1.08995 * 109.46980 * 181.24050 * 7 6 5 32 32 H 0.97003 * 119.99798 * 174.99133 * 12 11 9 33 33 H 1.09004 * 117.49783 * 214.97004 * 17 8 7 34 34 H 1.08997 * 117.50533 * 359.97438 * 17 8 7 35 35 H 1.09003 * 117.50091 * 252.50857 * 18 17 8 36 36 H 1.09009 * 117.49977 * 107.48749 * 18 17 8 37 37 H 1.08999 * 110.41406 * 79.29097 * 19 6 5 38 38 H 1.08997 * 110.41262 * 201.62286 * 19 6 5 39 39 H 0.96700 * 117.00205 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3773 2.0011 0.5509 5 6 2.2194 1.8016 -1.4469 6 7 3.5035 2.5475 -1.4050 7 6 4.0928 2.6570 -2.7461 8 6 3.1379 3.4261 -3.6614 9 6 2.6916 4.7721 -3.1514 10 1 1.6681 5.0889 -3.2876 11 6 3.5898 5.5991 -2.5109 12 7 4.8744 5.3184 -2.5346 13 14 2.9821 7.1182 -1.6096 14 1 2.8485 8.2432 -2.5697 15 1 1.6610 6.8332 -0.9941 16 1 3.9536 7.4859 -0.5484 17 6 3.3272 3.2701 -5.1715 18 6 2.1329 2.6114 -4.4783 19 6 4.3674 1.7368 -0.5086 20 6 3.4233 1.2628 0.6173 21 1 3.4852 1.9365 1.4720 22 6 3.7702 -0.1433 1.0340 23 8 4.3129 -0.8884 0.2528 24 8 3.4764 -0.5680 2.2729 25 1 -0.3634 0.4356 -0.9308 26 1 -0.3634 -1.0238 0.0883 27 1 -0.3633 0.5885 0.8426 28 1 1.4052 2.4628 -1.7435 29 1 2.2928 0.9567 -2.1316 30 1 4.2605 1.6594 -3.1519 31 1 5.0425 3.1882 -2.6834 32 1 5.5132 5.9370 -2.1471 33 1 3.1289 4.1411 -5.7963 34 1 4.1324 2.6199 -5.5134 35 1 2.1523 1.5276 -4.3640 36 1 1.1489 3.0490 -4.6468 37 1 4.7768 0.8817 -1.0464 38 1 5.1716 2.3487 -0.1002 39 1 3.7185 -1.4776 2.4942 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690090702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:44 Heat of formation + Delta-G solvation = -114.424098 kcal Electronic energy + Delta-G solvation = -22036.691202 eV Core-core repulsion = 18751.881148 eV Total energy + Delta-G solvation = -3284.810054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70443 -39.97538 -38.62852 -37.28170 -36.78826 -33.99206 -32.51865 -29.74724 -27.88050 -27.39531 -26.50895 -24.23273 -22.94850 -22.30969 -21.19418 -20.71261 -19.20011 -18.33698 -17.93065 -17.44515 -16.60882 -16.51825 -16.37293 -15.96520 -15.56901 -15.35187 -14.88157 -14.82444 -14.37308 -14.06687 -13.64323 -13.18648 -12.94423 -12.92611 -12.74089 -12.59930 -12.42928 -12.35538 -12.29803 -12.22787 -11.95821 -11.89075 -11.46162 -11.11381 -10.95076 -10.65285 -10.46003 -9.88683 -9.14354 -7.90609 -5.97018 1.22181 1.49333 1.53252 1.60925 2.02208 2.54888 2.65091 3.15040 3.38719 3.43432 3.60216 3.75556 4.04407 4.23017 4.29277 4.35006 4.45228 4.50707 4.55066 4.59424 4.69998 4.77038 4.78407 4.81187 4.85475 4.92728 4.98531 5.01532 5.14992 5.31316 5.53749 5.62575 5.64894 5.99737 6.05610 6.23527 6.32413 6.58227 6.99790 7.04053 7.64812 9.12797 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.006591 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.372188 B = 4247.373933 C = 4526.446686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.104 3.896 4 H 0.105 0.895 5 C 0.027 3.973 6 N -0.477 5.477 7 C 0.106 3.894 8 C 0.041 3.959 9 C -0.492 4.492 10 H 0.045 0.955 11 C 0.052 3.948 12 N -0.896 5.896 13 Si 0.943 3.057 14 H -0.286 1.286 15 H -0.270 1.270 16 H -0.286 1.286 17 C -0.207 4.207 18 C -0.193 4.193 19 C 0.042 3.958 20 C -0.082 4.082 21 H 0.142 0.858 22 C 0.513 3.487 23 O -0.549 6.549 24 O -0.503 6.503 25 H 0.043 0.957 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.030 0.970 30 H -0.010 1.010 31 H 0.088 0.912 32 H 0.257 0.743 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.088 0.912 39 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 -9.119 9.585 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C 0.046 3.954 4 H 0.123 0.877 5 C -0.102 4.102 6 N -0.201 5.201 7 C -0.022 4.022 8 C 0.040 3.960 9 C -0.529 4.529 10 H 0.063 0.937 11 C -0.150 4.150 12 N -0.534 5.534 13 Si 0.770 3.230 14 H -0.212 1.212 15 H -0.195 1.195 16 H -0.212 1.212 17 C -0.246 4.246 18 C -0.230 4.230 19 C -0.087 4.087 20 C -0.102 4.102 21 H 0.160 0.840 22 C 0.356 3.644 23 O -0.439 6.439 24 O -0.316 6.316 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.008 0.992 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -5.506 -8.509 9.609 13.966 hybrid contribution 0.105 -0.385 -0.338 0.523 sum -5.401 -8.894 9.271 13.936 Atomic orbital electron populations 1.23000 0.78794 1.03966 1.01173 1.87872 1.22278 1.27078 1.95020 1.22834 0.92217 0.85222 0.95171 0.87681 1.23478 0.94999 0.95920 0.95816 1.65330 1.01995 1.42034 1.10692 1.21589 0.99703 0.93788 0.87084 1.18978 0.94886 0.94433 0.87683 1.20394 0.95492 1.00183 1.36817 0.93676 1.25303 0.94719 0.99553 0.95384 1.69932 1.01478 1.36505 1.45463 0.85829 0.78359 0.80108 0.78683 1.21227 1.19511 1.21181 1.22942 0.99636 1.01726 1.00262 1.22890 0.94150 0.97166 1.08789 1.23075 0.96044 0.96146 0.93410 1.21936 0.96093 0.91490 1.00690 0.83997 1.22786 0.72799 0.89695 0.79081 1.90668 1.41779 1.57577 1.53875 1.84467 1.76996 1.38494 1.31678 0.93786 0.88214 0.91966 0.89951 0.95182 0.99191 0.89421 0.93314 0.91044 0.91219 0.90678 0.90311 0.94170 0.89362 0.71340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.92 113.37 1.24 1.78 16 2 O -0.40 -11.60 8.90 -148.98 -1.33 -12.93 16 3 C 0.10 3.11 3.48 31.49 0.11 3.22 16 4 H 0.11 2.69 7.80 -2.39 -0.02 2.67 16 5 C 0.03 0.98 4.83 86.45 0.42 1.40 16 6 N -0.48 -20.03 5.10 -881.47 -4.49 -24.53 16 7 C 0.11 5.02 4.13 86.30 0.36 5.38 16 8 C 0.04 1.98 1.30 -52.93 -0.07 1.91 16 9 C -0.49 -25.94 8.67 25.60 0.22 -25.72 16 10 H 0.05 2.40 7.84 -2.91 -0.02 2.38 16 11 C 0.05 2.72 5.24 84.65 0.44 3.17 16 12 N -0.90 -48.77 11.04 21.45 0.24 -48.54 16 13 Si 0.94 42.35 29.56 68.60 2.03 44.38 16 14 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 17 C -0.21 -9.48 9.95 30.59 0.30 -9.17 16 18 C -0.19 -8.22 8.94 30.59 0.27 -7.95 16 19 C 0.04 1.52 5.98 86.45 0.52 2.04 16 20 C -0.08 -2.44 3.56 -10.64 -0.04 -2.48 16 21 H 0.14 3.45 8.14 -2.39 -0.02 3.43 16 22 C 0.51 15.01 6.20 71.24 0.44 15.45 16 23 O -0.55 -19.91 16.40 21.96 0.36 -19.55 16 24 O -0.50 -10.68 13.42 -51.41 -0.69 -11.37 16 25 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.05 7.99 -2.38 -0.02 1.04 16 28 H 0.08 3.20 7.86 -2.39 -0.02 3.18 16 29 H 0.03 1.19 7.53 -2.39 -0.02 1.18 16 30 H -0.01 -0.46 7.92 -2.39 -0.02 -0.48 16 31 H 0.09 4.62 6.16 -2.39 -0.01 4.61 16 32 H 0.26 13.52 8.32 -92.71 -0.77 12.75 16 33 H 0.07 3.32 8.14 -2.38 -0.02 3.30 16 34 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.07 3.00 7.80 -2.39 -0.02 2.98 16 36 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 37 H 0.04 1.61 6.63 -2.39 -0.02 1.59 16 38 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.43 5.24 9.10 -74.06 -0.67 4.56 16 Total: -1.00 -64.29 320.87 0.71 -63.58 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.37 Total: 19.94 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.22 Total: -10.98 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -4.26 Total: -73.07 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.66 Total: -43.85 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -64.29 0.71 -63.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690090702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.844 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds