Wall clock time and date at job start Mon Mar 30 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99754 * 2 1 4 4 H 1.09002 * 110.29173 * 332.13298 * 3 2 1 5 5 C 1.54375 * 110.32132 * 94.36379 * 3 2 1 6 6 N 1.48558 * 104.59683 * 142.75040 * 5 3 2 7 7 C 1.46897 * 111.00262 * 200.96446 * 6 5 3 8 8 C 1.52999 * 109.46855 * 278.95000 * 7 6 5 9 9 C 1.50697 * 115.55097 * 63.37416 * 8 7 6 10 10 H 1.08001 * 120.00460 * 217.45216 * 9 8 7 11 11 C 1.37874 * 120.00132 * 37.45304 * 9 8 7 12 12 N 1.31519 * 119.99838 * 10.94188 * 11 9 8 13 13 Si 1.86794 * 120.00377 * 190.94289 * 11 9 8 14 14 H 1.48502 * 109.47533 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.47339 * 299.99880 * 13 11 9 16 16 H 1.48506 * 109.47010 * 59.99880 * 13 11 9 17 17 C 1.53003 * 117.51733 * 209.07489 * 8 7 6 18 18 C 1.53005 * 117.50123 * 277.70502 * 8 7 6 19 19 C 1.48567 * 104.21688 * 320.51683 * 6 5 3 20 20 C 1.54258 * 110.32440 * 210.00172 * 3 2 1 21 21 H 1.08998 * 110.31993 * 122.21198 * 20 3 2 22 22 C 1.50700 * 110.32320 * 0.02562 * 20 3 2 23 23 O 1.20820 * 120.00083 * 278.56439 * 22 20 3 24 24 O 1.34226 * 119.99606 * 98.56385 * 22 20 3 25 25 H 1.09004 * 109.46501 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46731 * 299.99285 * 1 2 3 27 27 H 1.08993 * 109.47389 * 59.99637 * 1 2 3 28 28 H 1.09003 * 110.41537 * 23.97016 * 5 3 2 29 29 H 1.08999 * 110.41537 * 261.52877 * 5 3 2 30 30 H 1.09004 * 109.47205 * 158.95061 * 7 6 5 31 31 H 1.08994 * 109.47465 * 38.95015 * 7 6 5 32 32 H 0.97003 * 120.00260 * 174.97897 * 12 11 9 33 33 H 1.09005 * 117.49765 * 214.96607 * 17 8 7 34 34 H 1.08998 * 117.50131 * 359.97438 * 17 8 7 35 35 H 1.09005 * 117.49708 * 359.97105 * 18 8 7 36 36 H 1.08993 * 117.50346 * 144.99510 * 18 8 7 37 37 H 1.09008 * 110.40895 * 158.26031 * 19 6 5 38 38 H 1.09003 * 110.41272 * 280.58176 * 19 6 5 39 39 H 0.96704 * 116.99836 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3383 2.0184 -0.4779 5 6 2.3289 1.7505 1.4435 6 7 3.6077 2.4982 1.3311 7 6 4.2967 2.5608 2.6269 8 6 3.6867 3.6784 3.4753 9 6 2.2383 3.4943 3.8486 10 1 1.5755 4.3465 3.8775 11 6 1.7592 2.2379 4.1532 12 7 2.5970 1.2395 4.3294 13 14 -0.0798 1.9536 4.3158 14 1 -0.3332 0.5279 4.6451 15 1 -0.6203 2.8155 5.3975 16 1 -0.7481 2.2912 3.0333 17 6 4.5961 4.3699 4.4930 18 6 4.1743 5.1059 3.2196 19 6 4.3998 1.7200 0.3440 20 6 3.3726 1.2855 -0.7233 21 1 3.3699 1.9899 -1.5551 22 6 3.6839 -0.1047 -1.2147 23 8 4.1465 -0.9239 -0.4567 24 8 3.4473 -0.4327 -2.4946 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.4520 0.8820 2.0907 29 1 1.5408 2.4003 1.8238 30 1 5.3555 2.7634 2.4661 31 1 4.1836 1.6085 3.1449 32 1 2.2664 0.3734 4.6148 33 1 4.1467 4.6919 5.4325 34 1 5.6292 4.0285 4.5586 35 1 4.9301 5.2488 2.4472 36 1 3.4477 5.9118 3.3213 37 1 5.1710 2.3471 -0.1036 38 1 4.8487 0.8480 0.8196 39 1 3.6628 -1.3364 -2.7632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690090704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:48 Heat of formation + Delta-G solvation = -89.296438 kcal Electronic energy + Delta-G solvation = -22356.990017 eV Core-core repulsion = 19073.269580 eV Total energy + Delta-G solvation = -3283.720437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34415 -38.49336 -37.00059 -35.93878 -35.32175 -32.35264 -30.93173 -28.16404 -26.37722 -25.80370 -24.89610 -22.76884 -21.09098 -20.57845 -19.81595 -18.91658 -17.98410 -16.95986 -16.17474 -15.92838 -15.23471 -15.02436 -14.86719 -14.49619 -14.01510 -13.82050 -13.36692 -13.24944 -12.55009 -12.43408 -12.24619 -11.72112 -11.46018 -11.34105 -11.26669 -11.03226 -10.94269 -10.74800 -10.57571 -10.47131 -10.29625 -10.13774 -9.93520 -9.37071 -9.22139 -8.97174 -8.61261 -8.11347 -7.38341 -6.01526 -4.05729 2.51733 3.19509 3.21511 3.29409 3.29844 3.94477 4.30711 4.84119 4.85702 4.98133 5.17615 5.32773 5.46540 5.57496 5.63645 5.67434 5.74870 5.81998 5.92909 6.09455 6.20278 6.30490 6.40679 6.66172 6.71747 6.74055 6.81551 6.88290 6.99586 7.11764 7.24425 7.35530 7.41402 7.52023 7.82041 8.02841 8.13411 8.18030 8.47162 8.87903 9.48155 10.94228 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.008467 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.588543 B = 3306.340910 C = 4331.085720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.087 3.913 4 H 0.077 0.923 5 C 0.024 3.976 6 N -0.487 5.487 7 C 0.074 3.926 8 C 0.065 3.935 9 C -0.478 4.478 10 H 0.058 0.942 11 C 0.073 3.927 12 N -0.879 5.879 13 Si 0.878 3.122 14 H -0.285 1.285 15 H -0.277 1.277 16 H -0.273 1.273 17 C -0.205 4.205 18 C -0.201 4.201 19 C 0.038 3.962 20 C -0.083 4.083 21 H 0.110 0.890 22 C 0.500 3.500 23 O -0.505 6.505 24 O -0.521 6.521 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -1.776 -10.901 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.029 3.971 4 H 0.095 0.905 5 C -0.104 4.104 6 N -0.211 5.211 7 C -0.053 4.053 8 C 0.064 3.936 9 C -0.515 4.515 10 H 0.077 0.923 11 C -0.129 4.129 12 N -0.517 5.517 13 Si 0.705 3.295 14 H -0.210 1.210 15 H -0.202 1.202 16 H -0.199 1.199 17 C -0.243 4.243 18 C -0.238 4.238 19 C -0.090 4.090 20 C -0.103 4.103 21 H 0.129 0.871 22 C 0.341 3.659 23 O -0.391 6.391 24 O -0.332 6.332 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -0.703 -1.447 -10.728 10.848 hybrid contribution -0.866 -1.300 0.275 1.586 sum -1.569 -2.747 -10.453 10.921 Atomic orbital electron populations 1.22759 0.81096 1.02370 1.00146 1.87912 1.19756 1.27533 1.95058 1.23154 0.91619 0.84511 0.97863 0.90459 1.23909 0.94699 0.99239 0.92576 1.65378 1.02858 1.43303 1.09572 1.22054 0.92894 1.02802 0.87529 1.18784 0.93486 0.87415 0.93916 1.20492 0.92487 0.92951 1.45594 0.92344 1.24916 0.97194 0.96001 0.94746 1.69766 1.33533 1.02730 1.45640 0.86910 0.86302 0.77457 0.78830 1.21004 1.20208 1.19886 1.22939 0.99039 1.08630 0.93727 1.22770 1.03355 0.98716 0.98981 1.23119 0.95028 0.97815 0.93056 1.21944 0.97831 0.90919 0.99636 0.87135 1.22979 0.73239 0.90706 0.78932 1.90687 1.41121 1.51364 1.55932 1.84535 1.80284 1.38067 1.30359 0.90013 0.93650 0.94137 0.90192 0.88038 0.95075 0.88253 0.92603 0.90615 0.91966 0.91470 0.91074 0.90220 0.92293 0.73917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.85 101.05 1.10 1.58 16 2 O -0.38 -7.01 8.88 -36.97 -0.33 -7.34 16 3 C 0.09 1.56 3.51 -25.35 -0.09 1.47 16 4 H 0.08 1.23 7.81 -51.93 -0.41 0.82 16 5 C 0.02 0.51 4.26 -2.18 -0.01 0.51 16 6 N -0.49 -10.27 5.30 -229.97 -1.22 -11.49 16 7 C 0.07 1.73 4.58 -3.83 -0.02 1.71 16 8 C 0.06 1.57 1.99 -155.66 -0.31 1.26 16 9 C -0.48 -12.41 7.57 -34.44 -0.26 -12.68 16 10 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 11 C 0.07 1.87 2.99 -17.82 -0.05 1.82 16 12 N -0.88 -23.31 9.24 55.43 0.51 -22.79 16 13 Si 0.88 20.04 28.79 -169.99 -4.89 15.14 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 C -0.20 -4.65 9.93 -26.73 -0.27 -4.92 16 18 C -0.20 -4.39 9.95 -26.73 -0.27 -4.65 16 19 C 0.04 0.70 5.90 -2.18 -0.01 0.69 16 20 C -0.08 -1.36 3.55 -90.39 -0.32 -1.68 16 21 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 22 C 0.50 8.24 6.12 36.01 0.22 8.46 16 23 O -0.50 -10.02 16.58 -20.96 -0.35 -10.37 16 24 O -0.52 -6.65 13.42 -39.25 -0.53 -7.18 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.08 1.98 5.95 -51.93 -0.31 1.67 16 29 H 0.10 2.37 5.25 -51.93 -0.27 2.09 16 30 H 0.03 0.68 7.96 -51.93 -0.41 0.27 16 31 H 0.10 2.60 5.16 -51.93 -0.27 2.33 16 32 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 33 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 38 H 0.06 1.19 6.83 -51.93 -0.35 0.84 16 39 H 0.40 3.38 9.10 45.56 0.41 3.80 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -29.46 312.19 -7.34 -36.80 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.96 Total: 8.96 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.29 Total: -6.43 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: -0.71 Total: -34.29 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.20 Total: -24.89 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.89 Total: 15.14 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.46 -7.34 -36.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690090704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.496 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds