Wall clock time and date at job start Mon Mar 30 2020 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99754 * 2 1 4 4 H 1.09002 * 110.29173 * 332.13298 * 3 2 1 5 5 C 1.54375 * 110.32132 * 94.36379 * 3 2 1 6 6 N 1.48558 * 104.59683 * 142.75040 * 5 3 2 7 7 C 1.46897 * 111.00262 * 200.96446 * 6 5 3 8 8 C 1.52999 * 109.46855 * 278.95000 * 7 6 5 9 9 C 1.50697 * 115.55097 * 63.37416 * 8 7 6 10 10 H 1.08001 * 120.00460 * 217.45216 * 9 8 7 11 11 C 1.37874 * 120.00132 * 37.45304 * 9 8 7 12 12 N 1.31519 * 119.99838 * 10.94188 * 11 9 8 13 13 Si 1.86794 * 120.00377 * 190.94289 * 11 9 8 14 14 H 1.48502 * 109.47533 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.47339 * 299.99880 * 13 11 9 16 16 H 1.48506 * 109.47010 * 59.99880 * 13 11 9 17 17 C 1.53003 * 117.51733 * 209.07489 * 8 7 6 18 18 C 1.53005 * 117.50123 * 277.70502 * 8 7 6 19 19 C 1.48567 * 104.21688 * 320.51683 * 6 5 3 20 20 C 1.54258 * 110.32440 * 210.00172 * 3 2 1 21 21 H 1.08998 * 110.31993 * 122.21198 * 20 3 2 22 22 C 1.50700 * 110.32320 * 0.02562 * 20 3 2 23 23 O 1.20820 * 120.00083 * 278.56439 * 22 20 3 24 24 O 1.34226 * 119.99606 * 98.56385 * 22 20 3 25 25 H 1.09004 * 109.46501 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46731 * 299.99285 * 1 2 3 27 27 H 1.08993 * 109.47389 * 59.99637 * 1 2 3 28 28 H 1.09003 * 110.41537 * 23.97016 * 5 3 2 29 29 H 1.08999 * 110.41537 * 261.52877 * 5 3 2 30 30 H 1.09004 * 109.47205 * 158.95061 * 7 6 5 31 31 H 1.08994 * 109.47465 * 38.95015 * 7 6 5 32 32 H 0.97003 * 120.00260 * 174.97897 * 12 11 9 33 33 H 1.09005 * 117.49765 * 214.96607 * 17 8 7 34 34 H 1.08998 * 117.50131 * 359.97438 * 17 8 7 35 35 H 1.09005 * 117.49708 * 359.97105 * 18 8 7 36 36 H 1.08993 * 117.50346 * 144.99510 * 18 8 7 37 37 H 1.09008 * 110.40895 * 158.26031 * 19 6 5 38 38 H 1.09003 * 110.41272 * 280.58176 * 19 6 5 39 39 H 0.96704 * 116.99836 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3383 2.0184 -0.4779 5 6 2.3289 1.7505 1.4435 6 7 3.6077 2.4982 1.3311 7 6 4.2967 2.5608 2.6269 8 6 3.6867 3.6784 3.4753 9 6 2.2383 3.4943 3.8486 10 1 1.5755 4.3465 3.8775 11 6 1.7592 2.2379 4.1532 12 7 2.5970 1.2395 4.3294 13 14 -0.0798 1.9536 4.3158 14 1 -0.3332 0.5279 4.6451 15 1 -0.6203 2.8155 5.3975 16 1 -0.7481 2.2912 3.0333 17 6 4.5961 4.3699 4.4930 18 6 4.1743 5.1059 3.2196 19 6 4.3998 1.7200 0.3440 20 6 3.3726 1.2855 -0.7233 21 1 3.3699 1.9899 -1.5551 22 6 3.6839 -0.1047 -1.2147 23 8 4.1465 -0.9239 -0.4567 24 8 3.4473 -0.4327 -2.4946 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.4520 0.8820 2.0907 29 1 1.5408 2.4003 1.8238 30 1 5.3555 2.7634 2.4661 31 1 4.1836 1.6085 3.1449 32 1 2.2664 0.3734 4.6148 33 1 4.1467 4.6919 5.4325 34 1 5.6292 4.0285 4.5586 35 1 4.9301 5.2488 2.4472 36 1 3.4477 5.9118 3.3213 37 1 5.1710 2.3471 -0.1036 38 1 4.8487 0.8480 0.8196 39 1 3.6628 -1.3364 -2.7632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690090704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:47 Heat of formation + Delta-G solvation = -110.510291 kcal Electronic energy + Delta-G solvation = -22357.909919 eV Core-core repulsion = 19073.269580 eV Total energy + Delta-G solvation = -3284.640339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.66658 -39.92341 -38.59791 -37.24867 -36.79661 -34.29509 -32.43883 -29.65440 -27.82239 -27.57564 -26.50452 -24.15974 -22.85721 -22.19833 -21.17974 -20.71486 -19.23392 -18.36655 -17.82452 -17.44603 -16.73128 -16.51347 -16.37836 -15.92700 -15.70090 -15.24304 -15.03517 -14.72234 -14.15366 -13.96097 -13.84224 -13.28380 -13.16994 -12.91440 -12.64151 -12.58826 -12.37072 -12.32768 -12.24625 -12.10465 -12.00917 -11.76065 -11.42381 -11.15691 -10.90198 -10.68918 -10.43045 -9.95120 -9.14193 -7.97827 -6.07786 1.24492 1.35949 1.39912 1.45754 2.04154 2.39919 2.67644 3.02984 3.42973 3.47791 3.63891 3.86235 4.06703 4.28918 4.32428 4.40660 4.44475 4.50457 4.57498 4.61953 4.73720 4.76685 4.84026 4.88811 4.97831 5.05299 5.13971 5.21377 5.35585 5.44452 5.54724 5.63694 5.65562 5.88638 6.11208 6.29077 6.37548 6.50011 6.88930 7.06301 7.48390 8.94310 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.008467 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.588543 B = 3306.340910 C = 4331.085720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.090 3.910 4 H 0.104 0.896 5 C 0.030 3.970 6 N -0.486 5.486 7 C 0.084 3.916 8 C 0.035 3.965 9 C -0.492 4.492 10 H 0.048 0.952 11 C 0.046 3.954 12 N -0.896 5.896 13 Si 0.919 3.081 14 H -0.289 1.289 15 H -0.277 1.277 16 H -0.258 1.258 17 C -0.207 4.207 18 C -0.178 4.178 19 C 0.038 3.962 20 C -0.080 4.080 21 H 0.150 0.850 22 C 0.508 3.492 23 O -0.547 6.547 24 O -0.505 6.505 25 H 0.098 0.902 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.257 0.743 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.032 0.968 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 -1.097 -13.286 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.032 3.968 4 H 0.122 0.878 5 C -0.099 4.099 6 N -0.210 5.210 7 C -0.044 4.044 8 C 0.034 3.966 9 C -0.530 4.530 10 H 0.066 0.934 11 C -0.154 4.154 12 N -0.534 5.534 13 Si 0.745 3.255 14 H -0.215 1.215 15 H -0.202 1.202 16 H -0.183 1.183 17 C -0.246 4.246 18 C -0.216 4.216 19 C -0.090 4.090 20 C -0.099 4.099 21 H 0.168 0.832 22 C 0.351 3.649 23 O -0.437 6.437 24 O -0.318 6.318 25 H 0.116 0.884 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.050 0.950 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -1.123 -0.762 -13.150 13.220 hybrid contribution -0.737 -1.533 0.992 1.969 sum -1.860 -2.295 -12.158 12.512 Atomic orbital electron populations 1.22975 0.79447 1.03780 1.00766 1.87899 1.21698 1.27737 1.95013 1.23106 0.93082 0.85088 0.95570 0.87847 1.23645 0.94358 0.97182 0.94665 1.65325 1.03014 1.43790 1.08857 1.21800 0.93480 1.00795 0.88305 1.18920 0.93081 0.89202 0.95368 1.20623 0.93543 0.92786 1.46013 0.93381 1.25341 0.99944 0.95668 0.94430 1.69927 1.34663 1.02618 1.46229 0.86236 0.83038 0.76880 0.79300 1.21471 1.20249 1.18303 1.22933 0.99289 1.08672 0.93669 1.22754 1.03128 0.97117 0.98558 1.23173 0.95917 0.97017 0.92885 1.21975 0.95957 0.91986 1.00028 0.83224 1.22916 0.72195 0.90278 0.79486 1.90689 1.43177 1.52533 1.57313 1.84466 1.79395 1.39878 1.28080 0.88381 0.95227 0.91188 0.94060 0.90235 0.94185 0.91634 0.93338 0.91504 0.90840 0.89561 0.90866 0.87398 0.95009 0.71446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.85 113.37 1.23 1.95 16 2 O -0.40 -14.19 8.88 -147.32 -1.31 -15.50 16 3 C 0.09 3.06 3.51 31.49 0.11 3.17 16 4 H 0.10 2.95 7.81 -2.39 -0.02 2.94 16 5 C 0.03 1.30 4.26 86.45 0.37 1.67 16 6 N -0.49 -20.22 5.30 -881.49 -4.67 -24.89 16 7 C 0.08 3.95 4.58 86.30 0.39 4.34 16 8 C 0.04 1.70 1.99 -52.93 -0.11 1.59 16 9 C -0.49 -25.91 7.57 25.60 0.19 -25.72 16 10 H 0.05 2.56 7.84 -2.91 -0.02 2.54 16 11 C 0.05 2.42 2.99 84.65 0.25 2.67 16 12 N -0.90 -49.21 9.24 21.45 0.20 -49.01 16 13 Si 0.92 41.57 28.79 68.60 1.97 43.54 16 14 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 17 C -0.21 -9.31 9.93 30.60 0.30 -9.01 16 18 C -0.18 -7.53 9.95 30.60 0.30 -7.22 16 19 C 0.04 1.35 5.90 86.45 0.51 1.86 16 20 C -0.08 -2.40 3.55 -10.65 -0.04 -2.44 16 21 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 22 C 0.51 15.64 6.12 71.24 0.44 16.08 16 23 O -0.55 -21.46 16.58 24.10 0.40 -21.06 16 24 O -0.51 -11.13 13.42 -51.38 -0.69 -11.82 16 25 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 28 H 0.04 2.11 5.95 -2.39 -0.01 2.10 16 29 H 0.08 3.73 5.25 -2.39 -0.01 3.72 16 30 H 0.04 1.74 7.96 -2.39 -0.02 1.73 16 31 H 0.07 3.56 5.16 -2.39 -0.01 3.55 16 32 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 33 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 34 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 38 H 0.03 1.30 6.83 -2.39 -0.02 1.28 16 39 H 0.42 5.72 9.10 -74.05 -0.67 5.05 16 Total: -1.00 -64.95 312.19 0.25 -64.69 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.38 Total: 25.12 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 3.96 Total: -11.06 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -4.47 Total: -73.90 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -1.60 Total: -48.38 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.97 Total: 43.54 kcal Total: -64.95 0.25 -64.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690090704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.819 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds