Wall clock time and date at job start Mon Mar 30 2020 04:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00374 * 2 1 4 4 O 1.20819 * 120.00052 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00249 * 179.97438 * 3 2 1 6 6 C 1.50700 * 115.54952 * 325.58733 * 5 3 2 7 7 O 1.20755 * 119.99811 * 214.32542 * 6 5 3 8 8 C 1.50706 * 119.99815 * 34.32655 * 6 5 3 9 9 N 1.46902 * 109.46577 * 179.97438 * 8 6 5 10 10 C 1.46891 * 111.00304 * 293.95012 * 9 8 6 11 11 C 1.46901 * 110.99644 * 169.99988 * 9 8 6 12 12 H 1.08997 * 109.47092 * 60.00167 * 11 9 8 13 13 C 1.53007 * 109.47155 * 299.99959 * 11 9 8 14 14 C 1.50704 * 109.47263 * 180.02562 * 11 9 8 15 15 H 1.08001 * 119.99349 * 359.97438 * 14 11 9 16 16 C 1.37869 * 120.00149 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00061 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00127 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47193 * 59.99931 * 18 16 14 20 20 H 1.48501 * 109.47383 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47044 * 300.00088 * 18 16 14 22 22 C 1.53005 * 117.51462 * 111.28328 * 5 3 2 23 23 C 1.52993 * 117.50193 * 179.91292 * 5 3 2 24 24 H 1.08997 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47228 * 300.00142 * 1 2 3 26 26 H 1.09011 * 109.46563 * 59.99846 * 1 2 3 27 27 H 1.09000 * 109.47318 * 299.99467 * 8 6 5 28 28 H 1.09000 * 109.47161 * 60.00098 * 8 6 5 29 29 H 1.09003 * 109.47237 * 60.00538 * 10 9 8 30 30 H 1.08998 * 109.47394 * 179.97438 * 10 9 8 31 31 H 1.09003 * 109.47554 * 300.00530 * 10 9 8 32 32 H 1.08996 * 109.47058 * 180.02562 * 13 11 9 33 33 H 1.08997 * 109.47291 * 300.00087 * 13 11 9 34 34 H 1.09003 * 109.46595 * 60.00015 * 13 11 9 35 35 H 0.97006 * 120.00179 * 180.02562 * 17 16 14 36 36 H 1.09000 * 117.49284 * 214.97054 * 22 5 3 37 37 H 1.08993 * 117.49914 * 359.97438 * 22 5 3 38 38 H 1.09000 * 117.49635 * 359.97438 * 23 5 3 39 39 H 1.08999 * 117.49873 * 144.99881 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.2739 0.1887 0.7695 7 8 5.3018 0.4342 1.3537 8 6 3.6984 -1.2036 0.8093 9 7 4.5679 -2.0698 1.6166 10 6 5.8756 -2.2504 0.9723 11 6 3.9256 -3.3651 1.8763 12 1 3.7173 -3.8637 0.9296 13 6 2.6153 -3.1419 2.6342 14 6 4.8448 -4.2244 2.7056 15 1 5.8099 -3.8461 3.0089 16 6 4.4543 -5.4937 3.0761 17 7 3.2794 -5.9544 2.7062 18 14 5.5941 -6.5590 4.1034 19 1 5.8774 -5.8800 5.3933 20 1 4.9448 -7.8685 4.3660 21 1 6.8660 -6.7753 3.3680 22 6 4.2470 1.8033 -1.2637 23 6 4.2009 2.6669 -0.0015 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 2.7031 -1.1728 1.2525 28 1 3.6327 -1.5987 -0.2045 29 1 6.3599 -1.2810 0.8551 30 1 6.4995 -2.8953 1.5911 31 1 5.7380 -2.7086 -0.0071 32 1 2.1390 -4.1030 2.8273 33 1 2.8235 -2.6433 3.5809 34 1 1.9503 -2.5202 2.0347 35 1 3.0045 -6.8473 2.9672 36 1 5.2065 1.3656 -1.5391 37 1 3.6063 2.0938 -2.0962 38 1 3.5299 3.5258 -0.0037 39 1 5.1301 2.7973 0.5533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690441140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:45 Heat of formation + Delta-G solvation = -73.125521 kcal Electronic energy + Delta-G solvation = -21538.664678 eV Core-core repulsion = 18255.645465 eV Total energy + Delta-G solvation = -3283.019213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04142 -39.41674 -37.30196 -36.36207 -35.69581 -32.72303 -29.51384 -28.93640 -27.79484 -25.55808 -24.48378 -23.41059 -22.81049 -21.71049 -19.63230 -19.24914 -17.67509 -16.93308 -16.60998 -16.16119 -15.65740 -15.13547 -14.70724 -14.48306 -14.34181 -13.84803 -13.56061 -13.30816 -13.06352 -12.65711 -12.35014 -12.10436 -11.83641 -11.66708 -11.47989 -11.13885 -10.99855 -10.87180 -10.80956 -10.76364 -10.61291 -10.54907 -10.13868 -10.09178 -9.95118 -9.19083 -8.83514 -8.40816 -7.17155 -6.00340 -4.04167 1.73207 2.15990 2.56994 3.34072 3.37838 3.41559 3.47842 3.79664 4.35971 4.42829 4.46897 4.62219 5.03195 5.10224 5.12867 5.22819 5.28037 5.33261 5.48766 5.58617 5.68197 5.81569 5.89308 6.08689 6.22874 6.29164 6.42713 6.83027 6.87351 7.04533 7.14589 7.49780 7.55624 7.63403 7.81169 7.84055 8.20594 8.31708 8.59014 9.01935 9.60542 11.06614 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026941 B = 0.005153 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.048265 B = 5431.937777 C = 6221.497057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.342 6.342 3 C 0.508 3.492 4 O -0.505 6.505 5 C -0.208 4.208 6 C 0.395 3.605 7 O -0.422 6.422 8 C 0.011 3.989 9 N -0.527 5.527 10 C 0.031 3.969 11 C 0.213 3.787 12 H 0.000 1.000 13 C -0.135 4.135 14 C -0.503 4.503 15 H 0.064 0.936 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.121 4.121 23 C -0.119 4.119 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.119 0.881 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.006 0.994 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.009 0.991 35 H 0.261 0.739 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 12.913 -8.692 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.258 6.258 3 C 0.351 3.649 4 O -0.393 6.393 5 C -0.211 4.211 6 C 0.268 3.732 7 O -0.293 6.293 8 C -0.118 4.118 9 N -0.252 5.252 10 C -0.118 4.118 11 C 0.107 3.893 12 H 0.018 0.982 13 C -0.193 4.193 14 C -0.541 4.541 15 H 0.082 0.918 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.158 4.158 23 C -0.155 4.155 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.025 0.975 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.854 13.362 -7.889 15.777 hybrid contribution -0.057 -1.078 -0.267 1.112 sum -2.911 12.284 -8.157 15.030 Atomic orbital electron populations 1.23369 0.75836 1.04370 1.02430 1.86631 1.23688 1.32071 1.83371 1.21949 0.89204 0.81716 0.72010 1.90647 1.66379 1.36464 1.45803 1.21800 0.89741 1.01162 1.08395 1.23695 0.84071 0.89515 0.75928 1.90351 1.21573 1.83089 1.34273 1.22519 0.99869 0.90873 0.98518 1.62012 1.02660 1.16998 1.43513 1.22359 0.92598 1.00428 0.96371 1.19276 0.92287 0.82864 0.94844 0.98225 1.21879 0.97293 1.01602 0.98515 1.21118 1.02433 0.98003 1.32545 0.91799 1.24914 0.95319 0.97761 0.96203 1.69878 1.19452 1.17677 1.46378 0.86568 0.80721 0.79351 0.80811 1.20215 1.21387 1.20341 1.23114 1.01742 1.00604 0.90298 1.23170 1.02596 0.90500 0.99283 0.87453 0.91661 0.91912 0.86323 0.92230 0.92611 0.90323 0.97512 0.89494 0.94656 0.97193 0.92962 0.86680 0.87090 0.86569 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.34 -4.60 7.46 -39.24 -0.29 -4.90 16 3 C 0.51 7.08 7.47 36.01 0.27 7.35 16 4 O -0.50 -7.63 16.01 -18.74 -0.30 -7.93 16 5 C -0.21 -2.75 2.53 -156.81 -0.40 -3.15 16 6 C 0.40 6.53 6.50 -29.03 -0.19 6.35 16 7 O -0.42 -7.92 14.21 6.00 0.09 -7.83 16 8 C 0.01 0.20 3.91 -4.97 -0.02 0.18 16 9 N -0.53 -11.76 4.36 -237.72 -1.04 -12.80 16 10 C 0.03 0.64 8.93 60.06 0.54 1.18 16 11 C 0.21 5.38 2.06 -68.86 -0.14 5.24 16 12 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 13 C -0.13 -3.26 8.76 37.16 0.33 -2.93 16 14 C -0.50 -13.83 7.88 -34.44 -0.27 -14.10 16 15 H 0.06 1.77 6.41 -52.49 -0.34 1.43 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 18 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.12 -1.18 9.94 -26.73 -0.27 -1.45 16 23 C -0.12 -1.29 9.55 -26.73 -0.26 -1.54 16 24 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 26 H 0.06 0.57 8.13 -51.92 -0.42 0.14 16 27 H 0.12 2.19 4.12 -51.93 -0.21 1.97 16 28 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 29 H 0.06 1.08 5.89 -51.93 -0.31 0.78 16 30 H 0.08 1.75 6.10 -51.93 -0.32 1.43 16 31 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.12 1.18 7.67 -51.93 -0.40 0.78 16 39 H 0.12 1.30 7.67 -51.93 -0.40 0.90 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -31.30 319.29 -6.11 -37.41 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.54 Total: -0.57 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 0.56 Total: 0.06 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.41 Total: -37.41 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.51 Total: -20.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.30 -6.11 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690441140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.717 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds