Wall clock time and date at job start Mon Mar 30 2020 04:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34223 * 117.00374 * 2 1 4 4 O 1.20819 * 120.00052 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00249 * 179.97438 * 3 2 1 6 6 C 1.50700 * 115.54952 * 325.58733 * 5 3 2 7 7 O 1.20755 * 119.99811 * 214.32542 * 6 5 3 8 8 C 1.50706 * 119.99815 * 34.32655 * 6 5 3 9 9 N 1.46902 * 109.46577 * 179.97438 * 8 6 5 10 10 C 1.46891 * 111.00304 * 293.95012 * 9 8 6 11 11 C 1.46901 * 110.99644 * 169.99988 * 9 8 6 12 12 H 1.08997 * 109.47092 * 60.00167 * 11 9 8 13 13 C 1.53007 * 109.47155 * 299.99959 * 11 9 8 14 14 C 1.50704 * 109.47263 * 180.02562 * 11 9 8 15 15 H 1.08001 * 119.99349 * 359.97438 * 14 11 9 16 16 C 1.37869 * 120.00149 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00061 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00127 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47193 * 59.99931 * 18 16 14 20 20 H 1.48501 * 109.47383 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47044 * 300.00088 * 18 16 14 22 22 C 1.53005 * 117.51462 * 111.28328 * 5 3 2 23 23 C 1.52993 * 117.50193 * 179.91292 * 5 3 2 24 24 H 1.08997 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47228 * 300.00142 * 1 2 3 26 26 H 1.09011 * 109.46563 * 59.99846 * 1 2 3 27 27 H 1.09000 * 109.47318 * 299.99467 * 8 6 5 28 28 H 1.09000 * 109.47161 * 60.00098 * 8 6 5 29 29 H 1.09003 * 109.47237 * 60.00538 * 10 9 8 30 30 H 1.08998 * 109.47394 * 179.97438 * 10 9 8 31 31 H 1.09003 * 109.47554 * 300.00530 * 10 9 8 32 32 H 1.08996 * 109.47058 * 180.02562 * 13 11 9 33 33 H 1.08997 * 109.47291 * 300.00087 * 13 11 9 34 34 H 1.09003 * 109.46595 * 60.00015 * 13 11 9 35 35 H 0.97006 * 120.00179 * 180.02562 * 17 16 14 36 36 H 1.09000 * 117.49284 * 214.97054 * 22 5 3 37 37 H 1.08993 * 117.49914 * 359.97438 * 22 5 3 38 38 H 1.09000 * 117.49635 * 359.97438 * 23 5 3 39 39 H 1.08999 * 117.49873 * 144.99881 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.2739 0.1887 0.7695 7 8 5.3018 0.4342 1.3537 8 6 3.6984 -1.2036 0.8093 9 7 4.5679 -2.0698 1.6166 10 6 5.8756 -2.2504 0.9723 11 6 3.9256 -3.3651 1.8763 12 1 3.7173 -3.8637 0.9296 13 6 2.6153 -3.1419 2.6342 14 6 4.8448 -4.2244 2.7056 15 1 5.8099 -3.8461 3.0089 16 6 4.4543 -5.4937 3.0761 17 7 3.2794 -5.9544 2.7062 18 14 5.5941 -6.5590 4.1034 19 1 5.8774 -5.8800 5.3933 20 1 4.9448 -7.8685 4.3660 21 1 6.8660 -6.7753 3.3680 22 6 4.2470 1.8033 -1.2637 23 6 4.2009 2.6669 -0.0015 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 2.7031 -1.1728 1.2525 28 1 3.6327 -1.5987 -0.2045 29 1 6.3599 -1.2810 0.8551 30 1 6.4995 -2.8953 1.5911 31 1 5.7380 -2.7086 -0.0071 32 1 2.1390 -4.1030 2.8273 33 1 2.8235 -2.6433 3.5809 34 1 1.9503 -2.5202 2.0347 35 1 3.0045 -6.8473 2.9672 36 1 5.2065 1.3656 -1.5391 37 1 3.6063 2.0938 -2.0962 38 1 3.5299 3.5258 -0.0037 39 1 5.1301 2.7973 0.5533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690441140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:45 Heat of formation + Delta-G solvation = -92.687208 kcal Electronic energy + Delta-G solvation = -21539.512937 eV Core-core repulsion = 18255.645465 eV Total energy + Delta-G solvation = -3283.867472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11760 -40.67920 -38.58726 -37.80588 -36.78922 -34.72977 -31.28392 -30.43448 -28.90120 -27.21389 -26.05114 -24.97049 -23.62066 -23.03644 -21.23128 -20.55650 -18.91073 -18.36074 -17.84540 -17.63240 -17.04968 -16.48839 -16.17600 -16.11036 -15.43648 -15.41410 -15.07933 -14.54596 -14.32246 -14.16525 -13.95093 -13.47249 -13.05727 -12.93538 -12.79490 -12.63540 -12.59066 -12.51746 -12.37667 -12.10598 -11.99171 -11.91570 -11.79370 -11.71465 -11.59256 -10.92669 -10.51937 -10.47840 -8.94777 -8.10169 -6.21024 0.62244 1.01026 1.43659 1.45418 1.52844 1.59822 2.41654 2.55085 2.60891 3.18076 3.37732 3.44501 3.62533 3.73861 4.15020 4.27555 4.34611 4.38974 4.52926 4.54626 4.57931 4.61704 4.71824 4.75307 4.81307 4.93565 5.03852 5.04646 5.10936 5.23920 5.27064 5.50297 5.72866 5.77027 6.25971 6.34279 6.41623 6.56265 6.72198 6.91797 7.47428 8.95602 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026941 B = 0.005153 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.048265 B = 5431.937777 C = 6221.497057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.520 6.520 5 C -0.228 4.228 6 C 0.405 3.595 7 O -0.449 6.449 8 C 0.008 3.992 9 N -0.542 5.542 10 C 0.038 3.962 11 C 0.217 3.783 12 H -0.028 1.028 13 C -0.122 4.122 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.958 3.042 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.095 4.095 23 C -0.111 4.111 24 H 0.123 0.877 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.012 0.988 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 13.851 -9.518 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.354 3.646 4 O -0.410 6.410 5 C -0.231 4.231 6 C 0.279 3.721 7 O -0.322 6.322 8 C -0.120 4.120 9 N -0.266 5.266 10 C -0.110 4.110 11 C 0.111 3.889 12 H -0.010 1.010 13 C -0.180 4.180 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.132 4.132 23 C -0.148 4.148 24 H 0.141 0.859 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.136 0.864 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.714 14.308 -8.730 16.979 hybrid contribution -0.149 -1.343 -0.052 1.352 sum -2.863 12.965 -8.781 15.918 Atomic orbital electron populations 1.23621 0.74274 1.05697 1.03080 1.86604 1.25364 1.32033 1.83153 1.22022 0.89387 0.81609 0.71542 1.90637 1.66698 1.36849 1.46789 1.21658 0.89213 1.01274 1.10933 1.23587 0.83590 0.89353 0.75532 1.90343 1.22851 1.83435 1.35569 1.22590 0.99247 0.91696 0.98423 1.61922 1.03543 1.15795 1.45383 1.22277 0.91889 1.00880 0.95980 1.19079 0.92570 0.83994 0.93255 1.01009 1.21688 0.97258 1.00729 0.98374 1.21380 1.02614 0.98919 1.33147 0.92659 1.25641 0.96696 0.98874 0.97191 1.69989 1.20631 1.17980 1.47053 0.85617 0.79049 0.77781 0.79197 1.20070 1.20720 1.19742 1.23366 1.01925 0.98200 0.89697 1.23276 1.02275 0.89366 0.99832 0.85864 0.91707 0.90629 0.86446 0.91152 0.91038 0.92271 0.96975 0.91715 0.95576 0.94415 0.92853 0.85502 0.84885 0.85690 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -9.06 7.46 -51.35 -0.38 -9.44 16 3 C 0.51 13.33 7.47 71.24 0.53 13.87 16 4 O -0.52 -14.80 16.01 21.99 0.35 -14.45 16 5 C -0.23 -5.56 2.53 -53.67 -0.14 -5.70 16 6 C 0.40 12.86 6.50 29.10 0.19 13.05 16 7 O -0.45 -16.39 14.21 -1.44 -0.02 -16.41 16 8 C 0.01 0.30 3.91 85.56 0.33 0.64 16 9 N -0.54 -24.18 4.36 -906.02 -3.95 -28.13 16 10 C 0.04 1.58 8.93 127.69 1.14 2.72 16 11 C 0.22 11.14 2.06 44.17 0.09 11.23 16 12 H -0.03 -1.54 8.14 -2.39 -0.02 -1.56 16 13 C -0.12 -5.95 8.76 71.98 0.63 -5.32 16 14 C -0.52 -29.14 7.88 25.60 0.20 -28.94 16 15 H 0.06 3.12 6.41 -2.91 -0.02 3.10 16 16 C 0.01 0.82 5.30 84.65 0.45 1.27 16 17 N -0.92 -52.17 11.32 21.44 0.24 -51.92 16 18 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C -0.10 -1.56 9.94 30.60 0.30 -1.25 16 23 C -0.11 -2.13 9.55 30.59 0.29 -1.84 16 24 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 26 H 0.08 1.23 8.13 -2.38 -0.02 1.21 16 27 H 0.12 4.24 4.12 -2.39 -0.01 4.23 16 28 H 0.07 2.39 8.12 -2.39 -0.02 2.37 16 29 H 0.07 2.73 5.89 -2.39 -0.01 2.72 16 30 H 0.06 2.66 6.10 -2.39 -0.01 2.65 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.57 6.20 -2.39 -0.01 1.55 16 35 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 36 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.12 2.21 7.67 -2.39 -0.02 2.19 16 39 H 0.12 2.35 7.67 -2.39 -0.02 2.33 16 Total: -1.00 -66.75 319.29 4.55 -62.21 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.05 Total: 10.76 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.23 Total: 1.42 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -3.71 Total: -80.06 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.05 Total: -40.29 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -66.75 4.55 -62.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690441140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.478 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds