Wall clock time and date at job start Mon Mar 30 2020 04:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46866 * 2 1 4 4 C 1.46903 * 110.99838 * 297.52767 * 3 2 1 5 5 C 1.50700 * 109.47128 * 292.36272 * 4 3 2 6 6 H 1.08001 * 120.00029 * 354.96092 * 5 4 3 7 7 C 1.37878 * 120.00412 * 174.95613 * 5 4 3 8 8 N 1.31519 * 119.99404 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00411 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47035 * 90.00276 * 9 7 5 11 11 H 1.48503 * 109.47423 * 210.00352 * 9 7 5 12 12 H 1.48506 * 109.47166 * 330.00317 * 9 7 5 13 13 C 1.46897 * 111.00502 * 61.47939 * 3 2 1 14 14 C 1.50700 * 109.46676 * 66.04360 * 13 3 2 15 15 O 1.20758 * 120.00421 * 0.02562 * 14 13 3 16 16 C 1.50709 * 119.99642 * 180.02562 * 14 13 3 17 17 C 1.50698 * 115.55073 * 34.33621 * 16 14 13 18 18 O 1.20823 * 120.00262 * 145.58150 * 17 16 14 19 19 O 1.34232 * 119.99919 * 325.57425 * 17 16 14 20 20 C 1.45195 * 117.00097 * 180.02562 * 19 17 16 21 21 C 1.53004 * 117.49521 * 248.62195 * 16 14 13 22 22 C 1.53003 * 60.00127 * 252.51222 * 21 16 14 23 23 H 1.08993 * 109.47091 * 299.09480 * 1 2 3 24 24 H 1.09002 * 109.47142 * 59.09331 * 1 2 3 25 25 H 1.08999 * 109.47101 * 179.09426 * 1 2 3 26 26 H 1.08998 * 109.47007 * 239.99828 * 2 1 3 27 27 H 1.08997 * 109.46883 * 119.99551 * 2 1 3 28 28 H 1.08997 * 109.47456 * 52.36381 * 4 3 2 29 29 H 1.09005 * 109.47114 * 172.36950 * 4 3 2 30 30 H 0.97001 * 119.99860 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.47619 * 186.04582 * 13 3 2 32 32 H 1.09001 * 109.47096 * 306.04835 * 13 3 2 33 33 H 1.08998 * 109.46885 * 180.02562 * 20 19 17 34 34 H 1.08997 * 109.47355 * 300.00297 * 20 19 17 35 35 H 1.09003 * 109.46959 * 60.00285 * 20 19 17 36 36 H 1.08992 * 117.50149 * 359.97438 * 21 16 14 37 37 H 1.09000 * 117.49269 * 145.02880 * 21 16 14 38 38 H 1.09002 * 117.50109 * 252.51645 * 22 21 16 39 39 H 1.09001 * 117.49476 * 107.48627 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5975 2.0926 -1.2162 5 6 2.2991 1.5002 -2.4111 6 1 3.0495 0.7359 -2.2727 7 6 1.9830 1.9338 -3.6812 8 7 1.0695 2.8649 -3.8498 9 14 2.8522 1.1991 -5.1624 10 1 2.0934 0.0176 -5.6457 11 1 2.9303 2.2135 -6.2441 12 1 4.2237 0.7819 -4.7749 13 6 1.5778 2.0997 1.2049 14 6 2.2298 1.4889 2.4186 15 8 2.9849 0.5550 2.2927 16 6 1.9393 2.0437 3.7894 17 6 0.5394 2.5610 3.9980 18 8 0.0058 2.4424 5.0755 19 8 -0.1148 3.1536 2.9867 20 6 -1.4596 3.6282 3.2597 21 6 3.0759 2.7678 4.5138 22 6 2.6322 1.3802 4.9814 23 1 -0.3633 0.4997 0.8979 24 1 -0.3633 0.5279 -0.8818 25 1 -0.3633 -1.0275 -0.0162 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5194 1.9904 -1.3403 29 1 1.8550 3.1483 -1.1303 30 1 0.8473 3.1702 -4.7432 31 1 1.8617 3.1493 1.1295 32 1 0.4944 2.0220 1.2967 33 1 -1.8733 4.0845 2.3605 34 1 -2.0864 2.7894 3.5624 35 1 -1.4286 4.3665 4.0610 36 1 4.0338 2.8426 3.9991 37 1 2.8112 3.6187 5.1414 38 1 2.0756 1.3183 5.9165 39 1 3.2981 0.5425 4.7739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690535579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:48 Heat of formation + Delta-G solvation = -78.437348 kcal Electronic energy + Delta-G solvation = -21494.097468 eV Core-core repulsion = 18210.847917 eV Total energy + Delta-G solvation = -3283.249551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07426 -39.46302 -37.39699 -36.44610 -35.69143 -32.56203 -30.01743 -28.90373 -27.91136 -26.01529 -24.35377 -23.09184 -22.80836 -21.88352 -19.75371 -19.25230 -17.63764 -16.84117 -16.63153 -16.14116 -15.63855 -15.24172 -14.72386 -14.64757 -14.47381 -14.19810 -13.50677 -13.39031 -13.18355 -12.69606 -12.38799 -12.15497 -11.82175 -11.76783 -11.52035 -11.45868 -11.15715 -10.92422 -10.85314 -10.81842 -10.72511 -10.63585 -10.52806 -10.00665 -9.94136 -9.36648 -8.98693 -8.41058 -7.15430 -6.00736 -4.00952 1.71583 2.13024 2.54347 3.33789 3.39931 3.45116 3.47698 3.79710 4.35331 4.44318 4.47727 4.60819 4.99286 5.06834 5.08845 5.21062 5.30912 5.35055 5.43083 5.58187 5.67376 5.78976 5.81811 5.84615 6.06217 6.07807 6.17673 6.21593 6.47912 6.70949 6.97333 7.29032 7.44112 7.52743 7.71659 7.84398 8.11040 8.21302 8.56374 9.07571 9.63010 11.09945 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.004984 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.651766 B = 5617.095564 C = 6080.442154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 N -0.524 5.524 4 C 0.189 3.811 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.010 3.990 14 C 0.396 3.604 15 O -0.422 6.422 16 C -0.209 4.209 17 C 0.508 3.492 18 O -0.505 6.505 19 O -0.342 6.342 20 C 0.033 3.967 21 C -0.118 4.118 22 C -0.120 4.120 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.005 0.995 29 H 0.026 0.974 30 H 0.260 0.740 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 1.186 16.228 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.074 4.074 3 N -0.248 5.248 4 C 0.064 3.936 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.118 4.118 14 C 0.269 3.731 15 O -0.292 6.292 16 C -0.212 4.212 17 C 0.351 3.649 18 O -0.393 6.393 19 O -0.257 6.257 20 C -0.061 4.061 21 C -0.155 4.155 22 C -0.157 4.157 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.491 0.760 16.308 16.393 hybrid contribution -0.950 -0.042 -0.846 1.273 sum -2.441 0.717 15.461 15.669 Atomic orbital electron populations 1.22424 0.99794 1.01072 1.01623 1.22107 0.91550 0.91314 1.02420 1.62234 1.59150 1.01934 1.01488 1.19818 0.94939 0.93668 0.85133 1.21154 1.21262 1.21684 0.90023 0.91834 1.24965 0.95354 0.95279 0.98986 1.69957 1.32125 1.29580 1.22363 0.86518 0.80151 0.78691 0.82195 1.20797 1.21335 1.19761 1.22455 0.99183 0.99836 0.90332 1.23663 0.79217 0.81904 0.88356 1.90352 1.28459 1.23149 1.87266 1.21801 0.90809 1.10632 0.97974 1.21989 0.86611 0.74362 0.81986 1.90649 1.67868 1.54184 1.26622 1.86657 1.30183 1.68800 1.40095 1.23359 0.79671 0.99641 1.03388 1.23128 0.95538 0.96890 0.99962 1.23177 1.00522 0.96951 0.95020 0.94203 0.91146 0.93325 0.89962 0.91777 0.97713 0.95640 0.93018 0.87804 0.90672 0.87505 0.91820 0.91817 0.86424 0.87097 0.86636 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.53 9.26 37.16 0.34 -3.18 16 2 C 0.05 1.12 5.55 -3.82 -0.02 1.10 16 3 N -0.52 -11.47 4.43 -237.52 -1.05 -12.52 16 4 C 0.19 4.82 4.54 -4.97 -0.02 4.79 16 5 C -0.50 -14.05 8.40 -34.44 -0.29 -14.34 16 6 H 0.06 1.80 7.42 -52.49 -0.39 1.41 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.01 0.19 3.88 -4.98 -0.02 0.17 16 14 C 0.40 6.40 6.48 -29.03 -0.19 6.21 16 15 O -0.42 -7.78 14.22 6.00 0.09 -7.69 16 16 C -0.21 -2.71 2.53 -156.80 -0.40 -3.11 16 17 C 0.51 6.87 7.47 36.00 0.27 7.14 16 18 O -0.51 -7.46 16.01 -18.75 -0.30 -7.76 16 19 O -0.34 -4.44 7.46 -39.26 -0.29 -4.73 16 20 C 0.03 0.32 10.56 101.05 1.07 1.39 16 21 C -0.12 -1.17 9.94 -26.73 -0.27 -1.43 16 22 C -0.12 -1.28 9.56 -26.73 -0.26 -1.54 16 23 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 24 H 0.07 1.47 6.26 -51.93 -0.32 1.14 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.83 7.01 -51.93 -0.36 1.46 16 27 H 0.06 1.27 5.86 -51.93 -0.30 0.96 16 28 H 0.01 0.14 6.00 -51.93 -0.31 -0.17 16 29 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.10 1.79 7.91 -51.93 -0.41 1.38 16 32 H 0.08 1.30 4.35 -51.93 -0.23 1.08 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 35 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 36 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.12 1.15 7.67 -51.93 -0.40 0.75 16 39 H 0.12 1.29 7.67 -51.93 -0.40 0.89 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -32.01 321.42 -6.41 -38.42 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.54 Total: -0.25 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 0.12 Total: -1.35 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.32 Total: -38.13 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.51 Total: -20.19 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.01 -6.41 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690535579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.013 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds